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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: PASS BioPerl-1.007001 v5.8.8 GNU/Linux
Date: 2017-06-02T21:32:46Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for BioPerl-1.007001
on perl 5.8.8, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
t/Align/AlignStats.t ................... ok
t/Align/AlignUtil.t .................... ok
t/Align/Graphics.t ..................... skipped: The optional module GD (or dependencies thereof) was not installed
t/Align/SimpleAlign.t .................. ok
t/Align/TreeBuild.t .................... ok
t/Align/Utilities.t .................... ok
t/AlignIO/AlignIO.t .................... ok
t/AlignIO/arp.t ........................ ok
t/AlignIO/bl2seq.t ..................... ok
t/AlignIO/clustalw.t ................... ok
t/AlignIO/emboss.t ..................... ok
t/AlignIO/fasta.t ...................... ok
t/AlignIO/largemultifasta.t ............ ok
t/AlignIO/maf.t ........................ ok
t/AlignIO/mase.t ....................... ok
t/AlignIO/mega.t ....................... ok
t/AlignIO/meme.t ....................... ok
t/AlignIO/metafasta.t .................. ok
t/AlignIO/msf.t ........................ ok
t/AlignIO/nexml.t ...................... skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/AlignIO/nexus.t ...................... ok
t/AlignIO/pfam.t ....................... ok
t/AlignIO/phylip.t ..................... ok
t/AlignIO/po.t ......................... ok
t/AlignIO/prodom.t ..................... ok
t/AlignIO/psi.t ........................ ok
t/AlignIO/selex.t ...................... ok
t/AlignIO/stockholm.t .................. ok
t/AlignIO/xmfa.t ....................... ok
t/Alphabet.t ........................... ok
t/Annotation/Annotation.t .............. ok
t/Annotation/AnnotationAdaptor.t ....... ok
t/Assembly/ContigSpectrum.t ............ ok
t/Assembly/IO/bowtie.t ................. skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
t/Assembly/IO/sam.t .................... skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
t/Assembly/core.t ...................... ok
t/Cluster/UniGene.t .................... ok
t/ClusterIO/ClusterIO.t ................ ok
t/ClusterIO/SequenceFamily.t ........... ok
t/ClusterIO/unigene.t .................. ok
t/Draw/Pictogram.t ..................... skipped: The optional module SVG (or dependencies thereof) was not installed
t/LiveSeq/Chain.t ...................... ok
t/LiveSeq/LiveSeq.t .................... ok
t/LiveSeq/Mutation.t ................... ok
t/LiveSeq/Mutator.t .................... ok
You are loading a Bio::DB::GFF database with GFF3 formatted data.
While this will likely work fine, the Bio::DB::GFF schema does not
always faithfully capture the complexity represented in GFF3 files.
Unless you have a specific reason for using Bio::DB::GFF, we suggest
that you use a Bio::DB::SeqFeature::Store database and its corresponding
loader, bp_seqfeature_load.pl.
t/LocalDB/BioDBGFF.t ................... ok
t/LocalDB/Fasta.t ...................... ok
t/LocalDB/Flat.t ....................... ok
t/LocalDB/Index/Blast.t ................ ok
t/LocalDB/Index/BlastTable.t ........... ok
t/LocalDB/Index/Index.t ................ ok
t/LocalDB/Qual.t ....................... ok
t/LocalDB/Registry.t ................... ok
t/LocalDB/SeqFeature.t ................. ok
t/LocalDB/Taxonomy/greengenes.t ........ ok
t/LocalDB/Taxonomy/silva.t ............. ok
t/LocalDB/Taxonomy/sqlite.t ............ skipped: The optional module 5.010 generated the following error:
t/LocalDB/transfac_pro.t ............... ok
t/Map/Cyto.t ........................... ok
t/Map/Linkage.t ........................ ok
t/Map/Map.t ............................ ok
t/Map/MapIO.t .......................... ok
t/Map/MicrosatelliteMarker.t ........... ok
t/Map/Physical.t ....................... ok
t/Matrix/IO/masta.t .................... ok
t/Matrix/IO/psm.t ...................... ok
t/Matrix/InstanceSite.t ................ ok
t/Matrix/Matrix.t ...................... ok
t/Matrix/ProtMatrix.t .................. ok
t/Matrix/ProtPsm.t ..................... ok
t/Matrix/SiteMatrix.t .................. ok
t/Ontology/GOterm.t .................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/GraphAdaptor.t .............. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/IO/go.t ..................... skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/IO/interpro.t ............... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/Ontology/IO/obo.t .................... skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/Ontology.t .................. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/OntologyEngine.t ............ skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/OntologyStore.t ............. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/Relationship.t .............. skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/RelationshipType.t .......... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/Term.t ...................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Perl.t ............................... ok
t/Phenotype/Correlate.t ................ ok
t/Phenotype/MeSH.t ..................... ok
t/Phenotype/Measure.t .................. ok
t/Phenotype/MiniMIMentry.t ............. ok
t/Phenotype/OMIMentry.t ................ ok
t/Phenotype/OMIMentryAllelicVariant.t .. ok
t/Phenotype/OMIMparser.t ............... ok
t/Phenotype/Phenotype.t ................ ok
t/PodSyntax.t .......................... skipped: Test::Pod 1.00 required for testing POD
t/PopGen/Coalescent.t .................. ok
t/PopGen/HtSNP.t ....................... ok
t/PopGen/MK.t .......................... ok
t/PopGen/PopGen.t ...................... ok
t/PopGen/PopGenSims.t .................. ok
t/PopGen/TagHaplotype.t ................ ok
t/RemoteDB/BioFetch.t .................. skipped: Network tests have not been requested
t/RemoteDB/CUTG.t ...................... ok
t/RemoteDB/EMBL.t ...................... skipped: Network tests have not been requested
t/RemoteDB/EntrezGene.t ................ skipped: The optional module Bio::ASN1::EntrezGene (or dependencies thereof) was not installed
t/RemoteDB/GenBank.t ................... skipped: Network tests have not been requested
t/RemoteDB/GenPept.t ................... skipped: Network tests have not been requested
t/RemoteDB/HIV/HIV.t ................... skipped: The optional module XML::Simple (or dependencies thereof) was not installed
t/RemoteDB/HIV/HIVAnnotProcessor.t ..... ok
t/RemoteDB/HIV/HIVQuery.t .............. skipped: The optional module XML::Simple (or dependencies thereof) was not installed
t/RemoteDB/HIV/HIVQueryHelper.t ........ skipped: The optional module XML::Simple (or dependencies thereof) was not installed
t/RemoteDB/MeSH.t ...................... skipped: Network tests have not been requested
t/RemoteDB/Query/GenBank.t ............. skipped: Network tests have not been requested
t/RemoteDB/RefSeq.t .................... ok
t/RemoteDB/SeqRead_fail.t .............. skipped: Network tests have not been requested
t/RemoteDB/SeqVersion.t ................ skipped: The optional module HTML::TableExtract (or dependencies thereof) was not installed
t/RemoteDB/SwissProt.t ................. skipped: Network tests have not been requested
t/RemoteDB/Taxonomy.t .................. ok
t/Restriction/Analysis-refac.t ......... ok
t/Restriction/Analysis.t ............... ok
t/Restriction/Gel.t .................... ok
t/Restriction/IO.t ..................... ok
t/Root/Exception.t ..................... ok
t/Root/HTTPget.t ....................... skipped: Network tests have not been requested
t/Root/IO.t ............................ ok
t/Root/RootI.t ......................... ok
t/Root/RootIO.t ........................ skipped: Network tests have not been requested
t/Root/Storable.t ...................... ok
t/Root/Utilities.t ..................... ok
t/SearchDist.t ......................... skipped: The optional module Bio::Ext::Align (or dependencies thereof) was not installed
t/SearchIO/CigarString.t ............... ok
t/SearchIO/SearchIO.t .................. ok
t/SearchIO/SimilarityPair.t ............ ok
t/SearchIO/Tiling.t .................... ok
t/SearchIO/Writer/GbrowseGFF.t ......... ok
t/SearchIO/Writer/HSPTableWriter.t ..... ok
t/SearchIO/Writer/HTMLWriter.t ......... ok
t/SearchIO/Writer/HitTableWriter.t ..... ok
t/SearchIO/Writer/TextWriter.t ......... ok
t/SearchIO/axt.t ....................... ok
t/SearchIO/blast.t ..................... ok
t/SearchIO/blast_pull.t ................ ok
t/SearchIO/blasttable.t ................ ok
t/SearchIO/cross_match.t ............... ok
t/SearchIO/erpin.t ..................... ok
t/SearchIO/exonerate.t ................. ok
t/SearchIO/fasta.t ..................... ok
t/SearchIO/gmap_f9.t ................... ok
t/SearchIO/hmmer.t ..................... ok
t/SearchIO/hmmer_pull.t ................ ok
t/SearchIO/infernal.t .................. ok
t/SearchIO/megablast.t ................. ok
t/SearchIO/psl.t ....................... ok
t/SearchIO/rnamotif.t .................. ok
t/SearchIO/sim4.t ...................... ok
t/SearchIO/waba.t ...................... ok
t/SearchIO/wise.t ...................... ok
t/Seq/DBLink.t ......................... ok
t/Seq/EncodedSeq.t ..................... ok
t/Seq/LargeLocatableSeq.t .............. ok
t/Seq/LargePSeq.t ...................... ok
t/Seq/LocatableSeq.t ................... ok
t/Seq/MetaSeq.t ........................ ok
t/Seq/PrimaryQual.t .................... ok
t/Seq/PrimarySeq.t ..................... ok
t/Seq/PrimedSeq.t ...................... ok
t/Seq/Quality.t ........................ ok
t/Seq/Seq.t ............................ ok
t/Seq/SimulatedRead.t .................. ok
t/Seq/WithQuality.t .................... ok
t/SeqEvolution.t ....................... ok
t/SeqFeature/Amplicon.t ................ ok
t/SeqFeature/Clone.t ................... ok
t/SeqFeature/Collection.t .............. ok
t/SeqFeature/Computation.t ............. ok
t/SeqFeature/FeaturePair.t ............. ok
t/SeqFeature/Gene.t .................... ok
t/SeqFeature/Generic.t ................. ok
t/SeqFeature/Location.t ................ ok
t/SeqFeature/LocationFactory.t ......... ok
t/SeqFeature/Primer.t .................. ok
t/SeqFeature/Range.t ................... ok
t/SeqFeature/RangeI.t .................. ok
t/SeqFeature/SeqAnalysisParser.t ....... ok
t/SeqFeature/SubSeq.t .................. ok
t/SeqFeature/Unflattener.t ............. ok
t/SeqIO/Handler.t ...................... ok
t/SeqIO/MultiFile.t .................... ok
t/SeqIO/Multiple_fasta.t ............... ok
t/SeqIO/SeqBuilder.t ................... ok
t/SeqIO/SeqIO.t ........................ ok
t/SeqIO/Splicedseq.t ................... ok
t/SeqIO/abi.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/ace.t .......................... ok
t/SeqIO/agave.t ........................ skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/alf.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/asciitree.t .................... ok
t/SeqIO/bsml.t ......................... skipped: The optional module XML::DOM (or dependencies thereof) was not installed
t/SeqIO/bsml_sax.t ..................... skipped: The optional module XML::SAX::Writer (or dependencies thereof) was not installed
t/SeqIO/chadoxml.t ..................... skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/chaos.t ........................ ok
t/SeqIO/chaosxml.t ..................... ok
t/SeqIO/ctf.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/embl.t ......................... ok
t/SeqIO/entrezgene.t ................... skipped: The optional module Bio::ASN1::EntrezGene (or dependencies thereof) was not installed
t/SeqIO/excel.t ........................ skipped: The optional module Spreadsheet::ParseExcel (or dependencies thereof) was not installed
t/SeqIO/exp.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/fasta.t ........................ ok
t/SeqIO/fastq.t ........................ ok
t/SeqIO/flybase_chadoxml.t ............. skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/game.t ......................... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/SeqIO/gbxml.t ........................ ok
t/SeqIO/gcg.t .......................... ok
t/SeqIO/genbank.t ...................... ok
t/SeqIO/interpro.t ..................... skipped: The optional module XML::DOM::XPath (or dependencies thereof) was not installed
t/SeqIO/kegg.t ......................... ok
t/SeqIO/largefasta.t ................... ok
t/SeqIO/lasergene.t .................... ok
t/SeqIO/locuslink.t .................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/SeqIO/mbsout.t ....................... ok
t/SeqIO/metafasta.t .................... ok
t/SeqIO/msout.t ........................ ok
t/SeqIO/nexml.t ........................ skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/SeqIO/phd.t .......................... ok
t/SeqIO/pir.t .......................... ok
t/SeqIO/pln.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/qual.t ......................... ok
t/SeqIO/raw.t .......................... ok
t/SeqIO/scf.t .......................... ok
t/SeqIO/seqxml.t ....................... skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/strider.t ...................... skipped: The optional module Convert::Binary::C (or dependencies thereof) was not installed
t/SeqIO/swiss.t ........................ ok
t/SeqIO/tab.t .......................... ok
t/SeqIO/table.t ........................ skipped: The optional module IO::Scalar (or dependencies thereof) was not installed
t/SeqIO/tigr.t ......................... skipped: The optional module Error (or dependencies thereof) was not installed
t/SeqIO/tigrxml.t ...................... skipped: The optional module XML::SAX::Writer (or dependencies thereof) was not installed
t/SeqIO/tinyseq.t ...................... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/SeqIO/ztr.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqTools/Backtranslate.t ............. skipped: The optional module List::MoreUtils (or dependencies thereof) was not installed
t/SeqTools/CodonTable.t ................ ok
t/SeqTools/ECnumber.t .................. ok
t/SeqTools/GuessSeqFormat.t ............ ok
t/SeqTools/OddCodes.t .................. ok
t/SeqTools/SeqPattern.t ................ ok
t/SeqTools/SeqStats.t .................. ok
t/SeqTools/SeqUtils.t .................. ok
t/SeqTools/SeqWords.t .................. ok
t/Species.t ............................ ok
t/Structure/IO.t ....................... ok
t/Structure/Structure.t ................ ok
t/Symbol.t ............................. ok
t/TaxonTree.t .......................... skipped: These modules are now probably deprecated
t/Tools/Alignment/Consed.t ............. ok
t/Tools/AmpliconSearch.t ............... ok
t/Tools/Analysis/DNA/ESEfinder.t ....... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/Domcut.t ...... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/ELM.t ......... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/GOR4.t ........ skipped: Network tests have not been requested
t/Tools/Analysis/Protein/HNN.t ......... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/NetPhos.t ..... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/Scansite.t .... ok
t/Tools/Analysis/Protein/Sopma.t ....... skipped: Network tests have not been requested
t/Tools/EMBOSS/Palindrome.t ............ ok
t/Tools/Est2Genome.t ................... ok
t/Tools/FootPrinter.t .................. ok
t/Tools/GFF.t .......................... ok
t/Tools/Geneid.t ....................... ok
t/Tools/Genewise.t ..................... ok
t/Tools/Genomewise.t ................... ok
t/Tools/Genpred.t ...................... ok
t/Tools/Hmmer.t ........................ ok
t/Tools/IUPAC.t ........................ ok
t/Tools/Lucy.t ......................... ok
t/Tools/Match.t ........................ ok
t/Tools/Phylo/Gerp.t ................... ok
t/Tools/Phylo/Molphy.t ................. ok
t/Tools/Phylo/PAML.t ................... ok
t/Tools/Phylo/Phylip/ProtDist.t ........ ok
t/Tools/Primer3.t ...................... ok
t/Tools/Promoterwise.t ................. ok
t/Tools/Pseudowise.t ................... ok
t/Tools/QRNA.t ......................... ok
t/Tools/RandDistFunctions.t ............ ok
t/Tools/RepeatMasker.t ................. ok
t/Tools/Run/RemoteBlast.t .............. skipped: Network tests have not been requested
t/Tools/Run/RemoteBlast_rpsblast.t ..... skipped: Network tests have not been requested
t/Tools/Seg.t .......................... ok
t/Tools/SiRNA.t ........................ ok
t/Tools/Sigcleave.t .................... ok
t/Tools/Signalp.t ...................... ok
t/Tools/Signalp/ExtendedSignalp.t ...... ok
t/Tools/Sim4.t ......................... ok
t/Tools/Spidey/Spidey.t ................ ok
t/Tools/TandemRepeatsFinder.t .......... ok
t/Tools/TargetP.t ...................... ok
t/Tools/Tmhmm.t ........................ ok
t/Tools/ePCR.t ......................... ok
t/Tools/pICalculator.t ................. ok
t/Tools/tRNAscanSE.t ................... ok
t/Tree/Compatible.t .................... skipped: The optional module Set::Scalar (or dependencies thereof) was not installed
t/Tree/Node.t .......................... ok
t/Tree/PhyloNetwork/Factory.t .......... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/GraphViz.t ......... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/MuVector.t ......... ok
t/Tree/PhyloNetwork/PhyloNetwork.t ..... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/RandomFactory.t .... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/TreeFactory.t ...... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/RandomTreeFactory.t ............. ok
t/Tree/Tree.t .......................... ok
t/Tree/TreeIO.t ........................ ok
t/Tree/TreeIO/lintree.t ................ ok
t/Tree/TreeIO/newick.t ................. ok
t/Tree/TreeIO/nexml.t .................. skipped: The optional module 5.012 generated the following error:
t/Tree/TreeIO/nexus.t .................. ok
t/Tree/TreeIO/nhx.t .................... ok
t/Tree/TreeIO/phyloxml.t ............... ok
t/Tree/TreeIO/svggraph.t ............... ok
t/Tree/TreeIO/tabtree.t ................ ok
t/Tree/TreeStatistics.t ................ ok
t/Variation/AAChange.t ................. ok
t/Variation/AAReverseMutate.t .......... ok
t/Variation/Allele.t ................... ok
t/Variation/DNAMutation.t .............. ok
t/Variation/RNAChange.t ................ ok
t/Variation/SNP.t ...................... ok
t/Variation/SeqDiff.t .................. ok
t/Variation/Variation_IO.t ............. skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/nexml.t .............................. skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
All tests successful.
Files=325, Tests=18754, 54 wallclock secs ( 1.72 usr 0.37 sys + 44.11 cusr 3.03 csys = 49.23 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------ ------ --------
Data::Stag 0.11 0.14
ExtUtils::Manifest 1.52 1.70
IO::String 0 1.08
perl v5.6.1 5.008008
Scalar::Util 0 1.18
build_requires:
Module Need Have
------------------ ------ --------
CPAN 1.81 2.14
Module::Build 0.42 0.4220
Test::Harness 2.62 3.36
Test::Most 0 0.35
URI::Escape 0 3.31
configure_requires:
Module Need Have
------------------ ------ --------
Module::Build 0.42 0.4220
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/eserte/bin/linux-gnu:/home/eserte/bin/sh:/home/eserte/bin:/home/eserte/bin/pistachio-perl/bin:/usr/games:/home/eserte/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB = /home/eserte/.cpan/build/2017060221/Test-Most-0.35-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Most-0.35-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Warn-0.32-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Warn-0.32-0/blib/lib:/home/eserte/.cpan/build/2017060221/Carp-1.38-0/blib/arch:/home/eserte/.cpan/build/2017060221/Carp-1.38-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Simple-1.302085-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Simple-1.302085-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Exception-0.43-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Exception-0.43-0/blib/lib:/home/eserte/.cpan/build/2017060221/Sub-Uplevel-0.2800-0/blib/arch:/home/eserte/.cpan/build/2017060221/Sub-Uplevel-0.2800-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Differences-0.64-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Differences-0.64-0/blib/lib:/home/eserte/.cpan/build/2017060221/Data-Dumper-2.161-0/blib/arch:/home/eserte/.cpan/build/2017060221/Data-Dumper-2.161-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Deep-1.127-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Deep-1.127-0/blib/lib:/home/eserte/.cpan/build/2017060221/Exception-Class-1.42-0/blib/arch:/home/eserte/.cpan/build/2017060221/Exception-Class-1.42-0/blib/lib:/home/eserte/.cpan/build/2017060221/Devel-StackTrace-2.02-0/blib/arch:/home/eserte/.cpan/build/2017060221/Devel-StackTrace-2.02-0/blib/lib:/home/eserte/.cpan/build/2017060221/Class-Data-Inheritable-0.08-0/blib/arch:/home/eserte/.cpan/build/2017060221/Class-Data-Inheritable-0.08-0/blib/lib:/home/eserte/.cpan/build/2017060221/Data-Stag-0.14-0/blib/arch:/home/eserte/.cpan/build/2017060221/Data-Stag-0.14-0/blib/lib:/home/eserte/.cpan/build/2017060221/IO-String-1.08-0/blib/arch:/home/eserte/.cpan/build/2017060221/IO-String-1.08-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 21528
PERL5_CPAN_IS_RUNNING = 21528
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 21508,21528
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1000/2017060221/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/zsh
STDPERL = perl
TERM = xterm
TMPDIR = /var/tmp/cpansmoker-1000/2017060221
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.8.8/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 1024 1000 128 115 111 108 46 44 30 29 27 25 24 4
$EGID = 1000 1024 1000 128 115 111 108 46 44 30 29 27 25 24 4
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.14
CPAN::Meta 2.143240
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.18
ExtUtils::Install 1.54
ExtUtils::MakeMaker 7.18
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON n/a
JSON::PP 2.27203
Module::Build 0.4220
Module::Signature n/a
Parse::CPAN::Meta 1.4414
Test::Harness 3.36
Test::More 1.302085
YAML 1.18
YAML::Syck 1.29
version 0.9917
--
Summary of my perl5 (revision 5 version 8 subversion 8) configuration:
Platform:
osname=linux, osvers=3.16.0-4-amd64, archname=x86_64-linux
uname='linux cabulja 3.16.0-4-amd64 #1 smp debian 3.16.7-ckt25-2+deb8u3 (2016-07-02) x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.8.8 -Dcf_email=srezic@cpan.org'
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: PERL_MALLOC_WRAP USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_PERLIO
Locally applied patches:
Devel::PatchPerl 1.42
Built under linux
Compiled at Jul 18 2016 20:21:29
%ENV:
PERL5LIB="/home/eserte/.cpan/build/2017060221/Test-Most-0.35-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Most-0.35-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Warn-0.32-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Warn-0.32-0/blib/lib:/home/eserte/.cpan/build/2017060221/Carp-1.38-0/blib/arch:/home/eserte/.cpan/build/2017060221/Carp-1.38-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Simple-1.302085-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Simple-1.302085-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Exception-0.43-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Exception-0.43-0/blib/lib:/home/eserte/.cpan/build/2017060221/Sub-Uplevel-0.2800-0/blib/arch:/home/eserte/.cpan/build/2017060221/Sub-Uplevel-0.2800-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Differences-0.64-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Differences-0.64-0/blib/lib:/home/eserte/.cpan/build/2017060221/Data-Dumper-2.161-0/blib/arch:/home/eserte/.cpan/build/2017060221/Data-Dumper-2.161-0/blib/lib:/home/eserte/.cpan/build/2017060221/Test-Deep-1.127-0/blib/arch:/home/eserte/.cpan/build/2017060221/Test-Deep-1.127-0/blib/lib:/home/eserte/.cpan/build/2017060221/Exception-Class-1.42-0/blib/arch:/home/eserte/.cpan/build/2017060221/Exception-Class-1.42-0/blib/lib:/home/eserte/.cpan/build/2017060221/Devel-StackTrace-2.02-0/blib/arch:/home/eserte/.cpan/build/2017060221/Devel-StackTrace-2.02-0/blib/lib:/home/eserte/.cpan/build/2017060221/Class-Data-Inheritable-0.08-0/blib/arch:/home/eserte/.cpan/build/2017060221/Class-Data-Inheritable-0.08-0/blib/lib:/home/eserte/.cpan/build/2017060221/Data-Stag-0.14-0/blib/arch:/home/eserte/.cpan/build/2017060221/Data-Stag-0.14-0/blib/lib:/home/eserte/.cpan/build/2017060221/IO-String-1.08-0/blib/arch:/home/eserte/.cpan/build/2017060221/IO-String-1.08-0/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="21528"
PERL5_CPAN_IS_RUNNING="21528"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="21508,21528"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1000/2017060221/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/eserte/.cpan/build/2017060221/Test-Most-0.35-0/blib/arch
/home/eserte/.cpan/build/2017060221/Test-Most-0.35-0/blib/lib
/home/eserte/.cpan/build/2017060221/Test-Warn-0.32-0/blib/arch
/home/eserte/.cpan/build/2017060221/Test-Warn-0.32-0/blib/lib
/home/eserte/.cpan/build/2017060221/Carp-1.38-0/blib/arch
/home/eserte/.cpan/build/2017060221/Carp-1.38-0/blib/lib
/home/eserte/.cpan/build/2017060221/Test-Simple-1.302085-0/blib/arch
/home/eserte/.cpan/build/2017060221/Test-Simple-1.302085-0/blib/lib
/home/eserte/.cpan/build/2017060221/Test-Exception-0.43-0/blib/arch
/home/eserte/.cpan/build/2017060221/Test-Exception-0.43-0/blib/lib
/home/eserte/.cpan/build/2017060221/Sub-Uplevel-0.2800-0/blib/arch
/home/eserte/.cpan/build/2017060221/Sub-Uplevel-0.2800-0/blib/lib
/home/eserte/.cpan/build/2017060221/Test-Differences-0.64-0/blib/arch
/home/eserte/.cpan/build/2017060221/Test-Differences-0.64-0/blib/lib
/home/eserte/.cpan/build/2017060221/Data-Dumper-2.161-0/blib/arch
/home/eserte/.cpan/build/2017060221/Data-Dumper-2.161-0/blib/lib
/home/eserte/.cpan/build/2017060221/Test-Deep-1.127-0/blib/arch
/home/eserte/.cpan/build/2017060221/Test-Deep-1.127-0/blib/lib
/home/eserte/.cpan/build/2017060221/Exception-Class-1.42-0/blib/arch
/home/eserte/.cpan/build/2017060221/Exception-Class-1.42-0/blib/lib
/home/eserte/.cpan/build/2017060221/Devel-StackTrace-2.02-0/blib/arch
/home/eserte/.cpan/build/2017060221/Devel-StackTrace-2.02-0/blib/lib
/home/eserte/.cpan/build/2017060221/Class-Data-Inheritable-0.08-0/blib/arch
/home/eserte/.cpan/build/2017060221/Class-Data-Inheritable-0.08-0/blib/lib
/home/eserte/.cpan/build/2017060221/Data-Stag-0.14-0/blib/arch
/home/eserte/.cpan/build/2017060221/Data-Stag-0.14-0/blib/lib
/home/eserte/.cpan/build/2017060221/IO-String-1.08-0/blib/arch
/home/eserte/.cpan/build/2017060221/IO-String-1.08-0/blib/lib
/opt/perl-5.8.8/lib/5.8.8/x86_64-linux
/opt/perl-5.8.8/lib/5.8.8
/opt/perl-5.8.8/lib/site_perl/5.8.8/x86_64-linux
/opt/perl-5.8.8/lib/site_perl/5.8.8
/opt/perl-5.8.8/lib/site_perl
.