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From: metabase:user:9820532a-708b-1014-9a05-b18a96298da1
Subject: FAIL Data-Babel-Client-0.02 v5.15.5 GNU/Linux
Date: 2011-11-25T16:39:28Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Victor Cassen,
This is a computer-generated report for Data-Babel-Client-0.02
on perl 5.15.5, created by CPAN-Reporter-1.2002.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Testing Data::Babel::Client 0.02, Perl 5.015005, /home/bri/perl5/perlbrew/perls/perl-5.15.5/bin/perl5.15.5
t/00-load.t ............... ok
# Failed test 'found protein_uniprot_symbol'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_nature_name'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_reactome_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_reactome_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_agilent_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found protein_ncbi_genbank'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_nature_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found function_go_description'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_affy_gpl'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_kegg_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found sequence_agilent'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_lumi_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found gene_rgd'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_agilent_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found transcript_ncbi_genbank'
# at t/10-test_idtypes.t line 39.
# Failed test 'found probe_agilent'
# at t/10-test_idtypes.t line 39.
# Failed test 'found transcript_ncbi_genbank_gi'
# at t/10-test_idtypes.t line 39.
# Failed test 'found gene_mgi'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_affy_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found protein_ncbi_genbank_gi'
# at t/10-test_idtypes.t line 39.
# Failed test 'found protein_uniprot_description'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_kegg_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_agilent_gpl'
# at t/10-test_idtypes.t line 39.
# Failed test 'found publication_pubmed'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_biocarta_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_lumi_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found mutation_cosmic_mutated'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_lumi_gpl'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_affy_id'
# at t/10-test_idtypes.t line 39.
# Looks like you failed 29 tests of 82.
t/10-test_idtypes.t .......
Dubious, test returned 29 (wstat 7424, 0x1d00)
Failed 29/82 subtests
t/11-test_translate.t ..... ok
t/12-test_missing_args.t .. ok
t/13-test_bad_args.t ...... ok
t/manifest.t .............. skipped: Author tests not required for installation
t/pod-coverage.t .......... ok
t/pod.t ................... ok
Test Summary Report
-------------------
t/10-test_idtypes.t (Wstat: 7424 Tests: 82 Failed: 29)
Failed tests: 2-3, 10-14, 17-21, 30, 35, 40-41, 48, 53
56-57, 60, 63-65, 68-69, 72-74
Non-zero exit status: 29
Files=8, Tests=125, 15 wallclock secs ( 0.07 usr 0.00 sys + 1.73 cusr 0.11 csys = 1.91 CPU)
Result: FAIL
Failed 1/8 test programs. 29/125 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
build_requires:
Module Need Have
--------------------- ---- ------
Carp 0 1.23
Class::AutoClass 1.54 1.54
Data::Dumper 0 2.131
HTTP::Request::Common 0 6.00
JSON 0 2.53
LWP::UserAgent 0 6.00
Test::More 0 0.98
configure_requires:
Module Need Have
--------------------- ---- ------
Module::Build 0.36 0.3800
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = C
LANGUAGE = en_GB:en
LC_ALL = C
PATH = /home/bri/bin:/home/bri/perl5/perlbrew/bin:/home/bri/perl5/perlbrew/perls/perl-5.15.5/bin:~/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PATH_WITHOUT_PERLBREW = ~/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 4193
PERL5_CPAN_IS_RUNNING = 4193
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1832,4193
PERLBREW_BASHRC_VERSION = 0.33
PERLBREW_HOME = /home/bri/.perlbrew
PERLBREW_PATH = /home/bri/perl5/perlbrew/bin:/home/bri/perl5/perlbrew/perls/perl-5.15.5/bin
PERLBREW_PERL = perl-5.15.5
PERLBREW_ROOT = /home/bri/perl5/perlbrew
PERLBREW_VERSION = 0.33
PERL_CPANM_OPT = --prompt --mirror http://172.16.1.3/cpan/
PERL_CR_SMOKER_CURRENT = Data-Babel-Client-0.02
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = linux
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/bri/perl5/perlbrew/perls/perl-5.15.5/bin/perl5.15.5
$UID/$EUID = 1000 / 1000
$GID = 1000 4 20 24 46 112 120 122 1000
$EGID = 1000 4 20 24 46 112 120 122 1000
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.9800
CPAN::Meta 2.112621
Cwd 3.37
ExtUtils::CBuilder 0.280204
ExtUtils::Command 1.17
ExtUtils::Install 1.57
ExtUtils::MakeMaker 6.62
ExtUtils::Manifest 1.60
ExtUtils::ParseXS 3.05
File::Spec 3.34
JSON 2.53
JSON::PP 2.27200
Module::Build 0.3800
Module::Signature n/a
Parse::CPAN::Meta 1.4401
Test::Harness 3.23
Test::More 0.98
YAML 0.73
YAML::Syck 1.19
version 0.95
--
Summary of my perl5 (revision 5 version 15 subversion 5) configuration:
Platform:
osname=linux, osvers=2.6.38-11-generic, archname=i686-linux
uname='linux lappy 2.6.38-11-generic #48-ubuntu smp fri jul 29 19:05:14 utc 2011 i686 i686 i386 gnulinux '
config_args='-de -Dprefix=/home/bri/perl5/perlbrew/perls/perl-5.15.5 -Dusedevel'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.5.2', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib /usr/lib/i386-linux-gnu /usr/lib64
libs=-lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.13'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PERL_USE_DEVEL
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Nov 22 2011 23:37:11
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="4193"
PERL5_CPAN_IS_RUNNING="4193"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1832,4193"
PERLBREW_BASHRC_VERSION="0.33"
PERLBREW_HOME="/home/bri/.perlbrew"
PERLBREW_PATH="/home/bri/perl5/perlbrew/bin:/home/bri/perl5/perlbrew/perls/perl-5.15.5/bin"
PERLBREW_PERL="perl-5.15.5"
PERLBREW_ROOT="/home/bri/perl5/perlbrew"
PERLBREW_VERSION="0.33"
PERL_CPANM_OPT="--prompt --mirror http://172.16.1.3/cpan/"
PERL_CR_SMOKER_CURRENT="Data-Babel-Client-0.02"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/bri/perl5/perlbrew/perls/perl-5.15.5/lib/site_perl/5.15.5/i686-linux
/home/bri/perl5/perlbrew/perls/perl-5.15.5/lib/site_perl/5.15.5
/home/bri/perl5/perlbrew/perls/perl-5.15.5/lib/5.15.5/i686-linux
/home/bri/perl5/perlbrew/perls/perl-5.15.5/lib/5.15.5
.