Bio-ASN1-EntrezGene v1.73 Perl 5 v5.22.4 amd64-freebsd
- Status
- Pass
- From
- Nigel Horne
- Dist
-
Bio-ASN1-EntrezGene v1.73
- Platform
- Perl 5 v5.22.4 amd64-freebsd
- Date
- 2018-09-25 08:36:34
- ID
- 1c11c014-c09e-11e8-a3df-8f34b8d57a06
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for Bio-ASN1-EntrezGene-1.73
on perl 5.22.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/usr/home/njh/perl5/perlbrew/perls/perl-5.22.4/bin/perl5.22.4" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ........... ok
t/author-eol.t ........... skipped: these tests are for testing by the author
t/author-mojibake.t ...... skipped: these tests are for testing by the author
t/author-no-tabs.t ....... skipped: these tests are for testing by the author
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author
t/entrezgene.t ........... ok
t/testindexer.t .......... ok
#
#
# Test parsers (Bio::ASN1::EntrezGene, Bio::ASN1::Sequence),
# parsing and method call:
#
#
# First testing gene parser:
#
#
# Now testing sequence parser:
t/testparser.t ........... ok
All tests successful.
Files=9, Tests=1448, 2 wallclock secs ( 0.12 usr 0.05 sys + 1.41 cusr 0.23 csys = 1.80 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------------------ ----- --------
base 0 2.23
Bio::Annotation::Comment 0 0
Bio::Annotation::DBLink 0 0
Bio::Annotation::OntologyTerm 0 0
Bio::Annotation::Reference 0 0
Bio::Annotation::SimpleValue 0 1.007002
Bio::Cluster::SequenceFamily 0 0
Bio::Index::AbstractSeq 0 0
Bio::Ontology::Term 0 0
Bio::Seq 0 0
Bio::SeqFeature::Gene::Exon 0 0
Bio::SeqFeature::Gene::GeneStructure 0 0
Bio::SeqFeature::Gene::Transcript 0 0
Bio::SeqFeature::Generic 0 0
Bio::SeqIO 0 0
Bio::Species 0 0
Carp 0 1.50
Data::Dumper 0 2.161
parent 0 0.237
perl 5.006 5.022004
strict 0 1.09
utf8 0 1.17
warnings 0 1.34
build_requires:
Module Need Have
------------------------------------ ----- --------
Bio::Root::Test 0 0
ExtUtils::MakeMaker 0 7.34
File::Spec 0 3.75
IO::Handle 0 1.39
IPC::Open3 0 1.18
lib 0 0.63
Test::More 0 1.302140
configure_requires:
Module Need Have
------------------------------------ ----- --------
ExtUtils::MakeMaker 0 7.34
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.22.4/bin:/home/njh/src/njh/smoker/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin
PERL5LIB = /home/njh/.cpan/build/BioPerl-1.007002-4/blib/arch:/home/njh/.cpan/build/BioPerl-1.007002-4/blib/lib:/home/njh/.cpan/build/Data-Stag-0.14-4/blib/arch:/home/njh/.cpan/build/Data-Stag-0.14-4/blib/lib:/home/njh/.cpan/build/Net-IDN-Encode-2.499_20180924-4/blib/arch:/home/njh/.cpan/build/Net-IDN-Encode-2.499_20180924-4/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 43266
PERL5_CPAN_IS_RUNNING = 43266
PERLBREW_HOME = /home/njh/.perlbrew
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.22.4/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.22.4/bin
PERLBREW_PERL = perl-5.22.4
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.84
PERLBREW_VERSION = 0.84
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/sh
TMPDIR = /tmp/testwrapper.43253
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/home/njh/perl5/perlbrew/perls/perl-5.22.4/bin/perl5.22.4
$UID/$EUID = 1000 / 1000
$GID = 1000 1000 0
$EGID = 1000 1000 0
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.150010
Cwd 3.75
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.34
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.71
ExtUtils::ParseXS 3.35
File::Spec 3.75
JSON 2.97001
JSON::PP 2.97001
Module::Build 0.4224
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302140
YAML 1.26
YAML::Syck 1.30
version 0.9924
--
Summary of my perl5 (revision 5 version 22 subversion 4) configuration:
Platform:
osname=freebsd, osvers=11.1-release-p4, archname=amd64-freebsd
uname='freebsd njh3.vultr.com 11.1-release-p4 freebsd 11.1-release-p4 #0: tue nov 14 06:12:40 utc 2017 root@amd64-builder.daemonology.net:usrobjusrsrcsysgeneric amd64 '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.22.4 -Aeval:scriptdir=/home/njh/perl5/perlbrew/perls/perl-5.22.4/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_FORTIFY_SOURCE=2',
optimize='-O',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='4.2.1 Compatible FreeBSD Clang 4.0.0 (tags/RELEASE_400/final 297347)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-Wl,-E -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib /usr/bin/../lib/clang/4.0.0/lib /usr/lib
libs=-lpthread -lm -lcrypt -lutil -lc
perllibs=-lpthread -lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
USE_PERL_ATOF
Locally applied patches:
Devel::PatchPerl 1.48
Built under freebsd
Compiled at Jun 3 2018 17:12:33
%ENV:
PERL5LIB="/home/njh/.cpan/build/BioPerl-1.007002-4/blib/arch:/home/njh/.cpan/build/BioPerl-1.007002-4/blib/lib:/home/njh/.cpan/build/Data-Stag-0.14-4/blib/arch:/home/njh/.cpan/build/Data-Stag-0.14-4/blib/lib:/home/njh/.cpan/build/Net-IDN-Encode-2.499_20180924-4/blib/arch:/home/njh/.cpan/build/Net-IDN-Encode-2.499_20180924-4/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="43266"
PERL5_CPAN_IS_RUNNING="43266"
PERLBREW_HOME="/home/njh/.perlbrew"
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.22.4/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.22.4/bin"
PERLBREW_PERL="perl-5.22.4"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.84"
PERLBREW_VERSION="0.84"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/njh/.cpan/build/BioPerl-1.007002-4/blib/arch
/home/njh/.cpan/build/BioPerl-1.007002-4/blib/lib
/home/njh/.cpan/build/Data-Stag-0.14-4/blib/arch
/home/njh/.cpan/build/Data-Stag-0.14-4/blib/lib
/home/njh/.cpan/build/Net-IDN-Encode-2.499_20180924-4/blib/arch
/home/njh/.cpan/build/Net-IDN-Encode-2.499_20180924-4/blib/lib
/home/njh/perl5/perlbrew/perls/perl-5.22.4/lib/site_perl/5.22.4/amd64-freebsd
/home/njh/perl5/perlbrew/perls/perl-5.22.4/lib/site_perl/5.22.4
/home/njh/perl5/perlbrew/perls/perl-5.22.4/lib/5.22.4/amd64-freebsd
/home/njh/perl5/perlbrew/perls/perl-5.22.4/lib/5.22.4
.