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From: metabase:user:322078bc-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-AutomatedAnnotation-1.133090 v5.18.0 FreeBSD
Date: 2013-11-10T16:21:11Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear AJPAGE,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9142. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
PERL_DL_NONLAZY=1 /usr/home/cpan/pit/rel/perl-5.18.0/bin/perl5.18.0 "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/Bio/*.t t/Bio/AutomatedAnnotation/*.t t/Bio/AutomatedAnnotation/CommandLine/*.t t/Bio/AutomatedAnnotation/External/*.t
t/Bio/AutomatedAnnotation.t ................................. ok
# Failed test 'Actual and expected output match for '-o different_output_filename t/data/example_annotation.gff''
# at t/lib/TestHelper.pm line 29.
# got: '"File","speH","argF","arcC1","hly","yfnB"
# "t/data/example_annotation.gff","1","1","1","1","1"
# "% Total","1","1","1","1","1"
# '
# expected: '"File","speH","hly","arcC1","yfnB","argF"
# "t/data/example_annotation.gff","1","1","1","1","1"
# "% Total","1","1","1","1","1"
# '
# Failed test 'Actual and expected output match for 't/data/example_annotation.gff''
# at t/lib/TestHelper.pm line 29.
# got: '"File","hly","yfnB","argF","speH","arcC1"
# "t/data/example_annotation.gff","1","1","1","1","1"
# "% Total","1","1","1","1","1"
# '
# expected: '"File","speH","hly","arcC1","yfnB","argF"
# "t/data/example_annotation.gff","1","1","1","1","1"
# "% Total","1","1","1","1","1"
# '
# Failed test 'Actual and expected output match for 't/data/example_annotation.gff t/data/copy_of_example_annotation.gff t/data/empty_annotation.gff t/data/different_to_example_annotation.gff''
# at t/lib/TestHelper.pm line 29.
# got: '"File","hly","speH","argF","yfnB","arcC1","another_hly","another_argF","another_yfnB","another_arcC1","another_speH"
# "t/data/copy_of_example_annotation.gff","1","1","1","1","1","0","0","0","0","0"
# "t/data/empty_annotation.gff","0","0","0","0","0","0","0","0","0","0"
# "t/data/example_annotation.gff","1","1","1","1","1","0","0","0","0","0"
# "t/data/different_to_example_annotation.gff","0","0","0","0","0","1","1","1","1","1"
# "% Total","0.5","0.5","0.5","0.5","0.5","0.25","0.25","0.25","0.25","0.25"
# '
# expected: '"File","speH","hly","arcC1","yfnB","argF","another_argF","another_hly","another_yfnB","another_arcC1","another_speH"
# "t/data/example_annotation.gff","1","1","1","1","1","0","0","0","0","0"
# "t/data/empty_annotation.gff","0","0","0","0","0","0","0","0","0","0"
# "t/data/copy_of_example_annotation.gff","1","1","1","1","1","0","0","0","0","0"
# "t/data/different_to_example_annotation.gff","0","0","0","0","0","1","1","1","1","1"
# "% Total","0.5","0.5","0.5","0.5","0.5","0.25","0.25","0.25","0.25","0.25"
# '
# Failed test 'Actual and expected output match for 't/data/example_annotation.gff t/data/empty_annotation.gff''
# at t/lib/TestHelper.pm line 29.
# got: '"File","hly","argF","speH","yfnB","arcC1"
# "t/data/empty_annotation.gff","0","0","0","0","0"
# "t/data/example_annotation.gff","1","1","1","1","1"
# "% Total","0.5","0.5","0.5","0.5","0.5"
# '
# expected: '"File","speH","hly","arcC1","yfnB","argF"
# "t/data/example_annotation.gff","1","1","1","1","1"
# "t/data/empty_annotation.gff","0","0","0","0","0"
# "% Total","0.5","0.5","0.5","0.5","0.5"
# '
# Looks like you failed 4 tests of 9.
t/Bio/AutomatedAnnotation/CommandLine/GeneNameOccurances.t ..
Dubious, test returned 4 (wstat 1024, 0x400)
Failed 4/9 subtests
t/Bio/AutomatedAnnotation/CommandLine/ParseGenesFromGFFs.t .. ok
t/Bio/AutomatedAnnotation/External/Cmscan.t ................. ok
# Failed test 'gene names sorted by value desc'
# at t/Bio/AutomatedAnnotation/GeneNameOccurances.t line 150.
# Structures begin differing at:
# $got->[0] = 'yfnB'
# $expected->[0] = 'speH'
# Looks like you failed 1 test of 14.
t/Bio/AutomatedAnnotation/GeneNameOccurances.t ..............
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/14 subtests
t/Bio/AutomatedAnnotation/GeneNamesFromGFF.t ................ ok
t/Bio/AutomatedAnnotation/ParseGenesFromGFF.t ............... ok
--------------------- WARNING ---------------------
MSG: Got a sequence without letters. Could not guess alphabet
---------------------------------------------------
t/Bio/AutomatedAnnotation/ParseGenesFromGFFs.t .............. ok
t/Bio/AutomatedAnnotation/Prokka.t .......................... ok
# Failed test 'Spredsheet data as expected'
# at t/Bio/AutomatedAnnotation/SpreadsheetOfGeneOccurances.t line 30.
# got: '"File","arcC1","yfnB","hly","argF","speH","another_argF","another_hly","another_speH","another_yfnB","another_arcC1"
# "t/data/empty_annotation.gff","0","0","0","0","0","0","0","0","0","0"
# "t/data/copy_of_example_annotation.gff","1","1","1","1","1","0","0","0","0","0"
# "t/data/example_annotation.gff","1","1","1","1","1","0","0","0","0","0"
# "t/data/different_to_example_annotation.gff","0","0","0","0","0","1","1","1","1","1"
# "% Total","0.5","0.5","0.5","0.5","0.5","0.25","0.25","0.25","0.25","0.25"
# '
# expected: '"File","speH","hly","arcC1","yfnB","argF","another_argF","another_hly","another_yfnB","another_arcC1","another_speH"
# "t/data/example_annotation.gff","1","1","1","1","1","0","0","0","0","0"
# "t/data/empty_annotation.gff","0","0","0","0","0","0","0","0","0","0"
# "t/data/copy_of_example_annotation.gff","1","1","1","1","1","0","0","0","0","0"
# "t/data/different_to_example_annotation.gff","0","0","0","0","0","1","1","1","1","1"
# "% Total","0.5","0.5","0.5","0.5","0.5","0.25","0.25","0.25","0.25","0.25"
# '
# Looks like you failed 1 test of 5.
t/Bio/AutomatedAnnotation/SpreadsheetOfGeneOccurances.t .....
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/5 subtests
# Failed test 'makeblastdb in PATH'
# at t/requires_external.t line 8.
# Failed test 'blastp in PATH'
# at t/requires_external.t line 8.
# Failed test 'prodigal in PATH'
# at t/requires_external.t line 8.
# Failed test 'parallel in PATH'
# at t/requires_external.t line 8.
# Failed test 'hmmscan in PATH'
# at t/requires_external.t line 8.
# Looks like you failed 5 tests of 11.
t/requires_external.t .......................................
Dubious, test returned 5 (wstat 1280, 0x500)
Failed 5/11 subtests
Test Summary Report
-------------------
t/Bio/AutomatedAnnotation/CommandLine/GeneNameOccurances.t (Wstat: 1024 Tests: 9 Failed: 4)
Failed tests: 3, 5, 7, 9
Non-zero exit status: 4
t/Bio/AutomatedAnnotation/GeneNameOccurances.t (Wstat: 256 Tests: 14 Failed: 1)
Failed test: 14
Non-zero exit status: 1
t/Bio/AutomatedAnnotation/SpreadsheetOfGeneOccurances.t (Wstat: 256 Tests: 5 Failed: 1)
Failed test: 5
Non-zero exit status: 1
t/requires_external.t (Wstat: 1280 Tests: 11 Failed: 5)
Failed tests: 7-11
Non-zero exit status: 5
Files=11, Tests=118, 22 wallclock secs ( 0.12 usr 0.15 sys + 9.71 cusr 9.21 csys = 19.20 CPU)
Result: FAIL
Failed 4/11 test programs. 11/118 subtests failed.
*** Error code 5
Stop in /usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Bio-AutomatedAnnotation-1.133090.
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
Bio::Perl 0 0
Bio::PrimarySeq 0 0
Bio::SearchIO 0 0
Bio::Seq 0 0
Bio::SeqFeature::Generic 0 0
Bio::SeqIO 0 0
Bio::Tools::GFF 0 0
Cwd 3.40 0
Data::Dumper 2.145 0
Env::Path 0.19 0
Exception::Class 1.37 0
File::Basename 2.84 0
File::Copy 2.26 0
File::Find 1.23 0
File::Slurp 9999.19 0
File::Temp 0.2304 0
FindBin 1.51 0
Getopt::Long 2.39 0
List::Util 1.27 0
Moose 2.1005 0
Moose::Role 2.1005 0
POSIX 1.32 0
Scalar::Util 1.27 0
Test::Most 0.31 0
Text::CSV 1.32 0
Time::Piece 1.20_01 0
Time::Seconds 0 0
XML::Simple 2.20 0
strict 1.07 0
warnings 1.18 0
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9142
CPANPLUS::Dist::Build 0.70
Cwd 3.40
ExtUtils::CBuilder 0.280212
ExtUtils::Command 1.17
ExtUtils::Install 1.59
ExtUtils::MakeMaker 6.82
ExtUtils::Manifest 1.63
ExtUtils::ParseXS 3.22
File::Spec 3.40
Module::Build 0.4008
Pod::Parser 1.60
Pod::Simple 3.28
Test::Harness 3.29
Test::More 1.001002
version 0.9904
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 0.90.
Powered by minismokebox version 0.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Bio-AutomatedAnnotation-1.133090/blib/script:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/libwww-perl-6.05/blib/script:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Moose-2.1005/blib/script:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Package-Stash-0.36/blib/script:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Env-Path-0.19/blib/script:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/BioPerl-1.6.922/blib/script:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Data-Stag-0.14/blib/script:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/home/cpan/bin
PERL5LIB = :/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/IO-String-1.08/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/IO-String-1.08/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Data-Stag-0.14/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Data-Stag-0.14/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Devel-StackTrace-1.30/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Devel-StackTrace-1.30/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Exception-Class-1.37/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Exception-Class-1.37/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Tester-0.109/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Tester-0.109/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-NoWarnings-1.04/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-NoWarnings-1.04/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Deep-0.110/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Deep-0.110/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Algorithm-Diff-1.1902/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Algorithm-Diff-1.1902/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Text-Diff-1.41/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Text-Diff-1.41/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Differences-0.61/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Differences-0.61/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Uplevel-0.24/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Uplevel-0.24/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Exception-0.32/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Exception-0.32/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/File-Slurp-9999.19/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/File-Slurp-9999.19/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Tree-DAG_Node-1.18/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Tree-DAG_Node-1.18/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Warn-0.24/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Warn-0.24/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Most-0.31/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Most-0.31/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/URI-1.60/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/URI-1.60/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/BioPerl-1.6.922/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/BioPerl-1.6.922/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Env-Path-0.19/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Env-Path-0.19/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/CPAN-Meta-Check-0.008/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/CPAN-Meta-Check-0.008/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Params-Util-1.07/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Params-Util-1.07/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Install-0.927/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Install-0.927/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Data-OptList-0.108/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Data-OptList-0.108/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Module-Runtime-0.013/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Module-Runtime-0.013/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Try-Tiny-0.18/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Try-Tiny-0.18/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Fatal-0.013/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Fatal-0.013/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Requires-0.07/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Requires-0.07/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Module-Implementation-0.07/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Module-Implementation-0.07/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/List-MoreUtils-0.33/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/List-MoreUtils-0.33/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Dist-CheckConflicts-0.09/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Dist-CheckConflicts-0.09/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Package-Stash-XS-0.28/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Package-Stash-XS-0.28/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Package-Stash-0.36/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Package-Stash-0.36/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Class-Load-0.20/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Class-Load-0.20/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Class-Load-XS-0.06/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Class-Load-XS-0.06/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Exporter-Progressive-0.001011/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Exporter-Progressive-0.001011/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Devel-GlobalDestruction-0.12/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Devel-GlobalDestruction-0.12/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Eval-Closure-0.11/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Eval-Closure-0.11/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/MRO-Compat-0.12/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/MRO-Compat-0.12/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Package-DeprecationManager-0.13/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Package-DeprecationManager-0.13/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Exporter-0.987/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Exporter-0.987/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Name-0.05/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Name-0.05/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Task-Weaken-1.04/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Task-Weaken-1.04/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-CheckDeps-0.010/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-CheckDeps-0.010/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Moose-2.1005/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Moose-2.1005/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Text-CSV-1.32/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Text-CSV-1.32/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/XML-NamespaceSupport-1.11/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/XML-NamespaceSupport-1.11/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/XML-SAX-Base-1.08/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/XML-SAX-Base-1.08/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/XML-SAX-0.99/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/XML-SAX-0.99/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Encode-Locale-1.03/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Encode-Locale-1.03/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/HTTP-Date-6.02/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/HTTP-Date-6.02/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/File-Listing-6.04/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/File-Listing-6.04/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/HTML-Tagset-3.20/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/HTML-Tagset-3.20/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/HTML-Parser-3.71/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/HTML-Parser-3.71/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/IO-HTML-1.00/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.1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PERL5_CPANPLUS_IS_RUNNING = 2188
PERL5_CPANPLUS_IS_VERSION = 0.9142
PERL5_MINISMOKEBOX = 0.58
PERL5_YACSMOKE_BASE = /usr/home/cpan/pit/rel/conf/perl-5.18.0
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/local/bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /usr/home/cpan/pit/rel/perl-5.18.0/bin/perl5.18.0
UID: $< = 1002
EUID: $> = 1002
GID: $( = 1002 1002
EGID: $) = 1002 1002
-------------------------------
--
Summary of my perl5 (revision 5 version 18 subversion 0) configuration:
Platform:
osname=freebsd, osvers=8.4-release, archname=i386-freebsd-thread-multi-64int
uname='freebsd fwltur.bingosnet.co.uk 8.4-release freebsd 8.4-release #0 r251259: mon jun 3 01:14:28 utc 2013 root@bake.isc.freebsd.org:usrobjusrsrcsysgeneric i386 '
config_args='-des -Dprefix=/usr/home/cpan/pit/rel/perl-5.18.0 -Dusethreads -Duse64bitint'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include',
optimize='-O',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.2.1 20070831 patched [FreeBSD]', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-pthread -Wl,-E -fstack-protector -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib
libs=-lgdbm -lm -lcrypt
perllibs=-lm -lcrypt
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_SAWAMPERSAND USE_64_BIT_INT
USE_ITHREADS USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
USE_REENTRANT_API
Built under freebsd
Compiled at Jun 9 2013 11:55:26
%ENV:
PERL5LIB=":/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/IO-String-1.08/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/IO-String-1.08/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Data-Stag-0.14/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Data-Stag-0.14/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Devel-StackTrace-1.30/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Devel-StackTrace-1.30/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Exception-Class-1.37/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Exception-Class-1.37/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Tester-0.109/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Tester-0.109/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-NoWarnings-1.04/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-NoWarnings-1.04/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Deep-0.110/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Deep-0.110/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Algorithm-Diff-1.1902/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Algorithm-Diff-1.1902/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Text-Diff-1.41/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Text-Diff-1.41/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Differences-0.61/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Differences-0.61/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Uplevel-0.24/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Uplevel-0.24/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Exception-0.32/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Exception-0.32/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/File-Slurp-9999.19/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/File-Slurp-9999.19/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Tree-DAG_Node-1.18/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Tree-DAG_Node-1.18/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Warn-0.24/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Warn-0.24/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Most-0.31/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Most-0.31/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/URI-1.60/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/URI-1.60/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/BioPerl-1.6.922/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/BioPerl-1.6.922/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Env-Path-0.19/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Env-Path-0.19/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/CPAN-Meta-Check-0.008/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/CPAN-Meta-Check-0.008/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Params-Util-1.07/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Params-Util-1.07/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Install-0.927/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Sub-Install-0.927/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Data-OptList-0.108/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Data-OptList-0.108/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Module-Runtime-0.013/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Module-Runtime-0.013/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Try-Tiny-0.18/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Try-Tiny-0.18/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Fatal-0.013/blib/lib:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Fatal-0.013/blib/arch:/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/Test-Requires-0.07/blib/lib:/usr/home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PERL5_CPANPLUS_IS_RUNNING="2188"
PERL5_CPANPLUS_IS_VERSION="0.9142"
PERL5_MINISMOKEBOX="0.58"
PERL5_YACSMOKE_BASE="/usr/home/cpan/pit/rel/conf/perl-5.18.0"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/usr/home/cpan/pit/rel/conf/perl-5.18.0/.cpanplus/5.18.0/build/IO-String-1.08/blib/lib
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