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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL BioX-SeqUtils-Promoter-0.1.1 v5.16.0 RC0 FreeBSD
Date: 2012-05-15T06:13:41Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Charles Stephen Embry,
This is a computer-generated report for BioX-SeqUtils-Promoter-0.1.1
on perl 5.16.0, created by CPAN-Reporter-1.2006.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /usr/home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/bin/perl5.16.0 "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
# Testing BioX::SeqUtils::Promoter 0.1.1
t/00.load.t ....... ok
t/10.length.t ..... ok
# Failed test 'use BioX::SeqUtils::Promoter::Alignment;'
# at t/10.load.t line 10.
# Tried to use 'BioX::SeqUtils::Promoter::Alignment'.
# Error: Can't locate DBIx/MySperql.pm in @INC (@INC contains: /var/tmp/CPAN-build/BioX-SeqUtils-Promoter-RYVmUU/blib/lib /var/tmp/CPAN-build/BioX-SeqUtils-Promoter-RYVmUU/blib/arch /home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/lib/site_perl/5.16.0/i386-freebsd /home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/lib/site_perl/5.16.0 /home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/lib/5.16.0/i386-freebsd /home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/lib/5.16.0 .) at /var/tmp/CPAN-build/BioX-SeqUtils-Promoter-RYVmUU/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# BEGIN failed--compilation aborted at /var/tmp/CPAN-build/BioX-SeqUtils-Promoter-RYVmUU/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# Compilation failed in require at /var/tmp/CPAN-build/BioX-SeqUtils-Promoter-RYVmUU/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# BEGIN failed--compilation aborted at /var/tmp/CPAN-build/BioX-SeqUtils-Promoter-RYVmUU/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# Compilation failed in require at (eval 9) line 2.
# BEGIN failed--compilation aborted at (eval 9) line 2.
# Failed test 'use BioX::SeqUtils::Promoter::Annotations::Consensus;'
# at t/10.load.t line 34.
# Tried to use 'BioX::SeqUtils::Promoter::Annotations::Consensus'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Annotations/Consensus.pm aborted.
# Compilation failed in require at (eval 19) line 2.
# BEGIN failed--compilation aborted at (eval 19) line 2.
# Failed test 'use BioX::SeqUtils::Promoter::SaveTypes::RImage;'
# at t/10.load.t line 58.
# Tried to use 'BioX::SeqUtils::Promoter::SaveTypes::RImage'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Alignment.pm aborted.
# Compilation failed in require at /var/tmp/CPAN-build/BioX-SeqUtils-Promoter-RYVmUU/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# BEGIN failed--compilation aborted at /var/tmp/CPAN-build/BioX-SeqUtils-Promoter-RYVmUU/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# Compilation failed in require at (eval 25) line 2.
# BEGIN failed--compilation aborted at (eval 25) line 2.
# Testing BioX::SeqUtils::Promoter 0.1.1
Use of uninitialized value $BioX::SeqUtils::Promoter::Alignment::VERSION in concatenation (.) or string at t/10.load.t line 13.
# Testing BioX::SeqUtils::Promoter::Alignment
# Testing BioX::SeqUtils::Promoter::Annotations 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::CG 0.1.1
Use of uninitialized value $BioX::SeqUtils::Promoter::Annotations::Consensus::VERSION in concatenation (.) or string at t/10.load.t line 37.
# Testing BioX::SeqUtils::Promoter::Annotations::Consensus
# Testing BioX::SeqUtils::Promoter::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes::Base 0.1.1
Use of uninitialized value $BioX::SeqUtils::Promoter::SaveTypes::RImage::VERSION in concatenation (.) or string at t/10.load.t line 61.
# Testing BioX::SeqUtils::Promoter::SaveTypes::RImage
# Testing BioX::SeqUtils::Promoter::SaveTypes::Text 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequence 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequences 0.1.1
# Looks like you failed 3 tests of 13.
t/10.load.t .......
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/13 subtests
Argument "ATGCGNTTANTCG" isn't numeric in numeric eq (==) at t/10.sequence.t line 23.
Argument "ATGCGNTTANTCG" isn't numeric in numeric eq (==) at t/10.sequence.t line 23.
t/10.sequence.t ... ok
Name "main::tstring3" used only once: possible typo at t/10.sequences.t line 7.
t/10.sequences.t ..
Failed 1/2 subtests
t/11.new.t ........ ok
Test Summary Report
-------------------
t/10.load.t (Wstat: 768 Tests: 13 Failed: 3)
Failed tests: 2, 6, 10
Non-zero exit status: 3
t/10.sequences.t (Wstat: 0 Tests: 1 Failed: 0)
Parse errors: Tests out of sequence. Found (2) but expected (1)
Bad plan. You planned 2 tests but ran 1.
Files=6, Tests=22, 1 wallclock secs ( 0.05 usr 0.00 sys + 0.30 cusr 0.03 csys = 0.39 CPU)
Result: FAIL
Failed 2/6 test programs. 3/22 subtests failed.
*** Error code 255
Stop in /var/tmp/CPAN-build/BioX-SeqUtils-Promoter-RYVmUU.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -------
Test::More 0 0.98
version 0 0.99
build_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 6.63_02
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
DBIC_NO_WARN_BAD_PERL = 1
PATH = /usr/local/bin:/usr/X11R6/bin:/usr/X11/bin:/usr/perl5.8.0/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/pilot/bin:/home/cpansand/bin/freebsd8.0:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/X386/bin:/usr/games:/home/cpansand/devel:/usr/home/e/eserte/src/perl/CPAN-Testers-ParallelSmoker/utils
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 14842
PERL5_CPAN_IS_RUNNING = 14842
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 66740,14842
PERL_BATCH = yes
PERL_CPAN_REPORTER_DIR = /home/cpansand/var/ctps/5160RC0/config/perl-5.16.0-RC0/cpanreporter
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_HTML_DISPLAY_CLASS = HTML::Display::Mozilla
PERL_PARALLEL_SMOKER = yes
PERL_TEST_UNPATCHED = 1
SHELL = /usr/local/bin/zsh
TERM = xterm
TMPDIR = /var/tmp/cpansmoker-1023
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/bin/perl5.16.0
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.9800
CPAN::Meta 2.120630
Cwd 3.39_02
ExtUtils::CBuilder 0.280206
ExtUtils::Command 1.17
ExtUtils::Install 1.58
ExtUtils::MakeMaker 6.63_02
ExtUtils::Manifest 1.61
ExtUtils::ParseXS 3.16
File::Spec 3.39_02
JSON 2.53
JSON::PP 2.27200
Module::Build 0.40
Module::Signature 0.68
Parse::CPAN::Meta 1.4404
Test::Harness 3.23
Test::More 0.98
YAML 0.81
YAML::Syck 1.20
version 0.99
--
Summary of my perl5 (revision 5 version 16 subversion 0) configuration:
Platform:
osname=freebsd, osvers=8.0-release-p4, archname=i386-freebsd
uname='freebsd biokovo.herceg.de 8.0-release-p4 freebsd 8.0-release-p4 #0: mon jul 12 20:22:27 utc 2010 root@i386-builder.daemonology.net:usrobjusrsrcsysgeneric i386 '
config_args='-ds -e -Uversiononly -Dinstallusrbinperl=n -Dusedevel -Dprefix=/home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include',
optimize='-O',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.2.1 20070719 [FreeBSD]', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-Wl,-E -fstack-protector -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib
libs=-lgdbm -lm -lcrypt -lutil -lc
perllibs=-lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PERL_USE_DEVEL
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_PERLIO
USE_PERL_ATOF
Locally applied patches:
RC0
Built under freebsd
Compiled at May 11 2012 21:05:05
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="14842"
PERL5_CPAN_IS_RUNNING="14842"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="66740,14842"
PERL_BATCH="yes"
PERL_CPAN_REPORTER_DIR="/home/cpansand/var/ctps/5160RC0/config/perl-5.16.0-RC0/cpanreporter"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_HTML_DISPLAY_CLASS="HTML::Display::Mozilla"
PERL_PARALLEL_SMOKER="yes"
PERL_TEST_UNPATCHED="1"
@INC:
/home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/lib/site_perl/5.16.0/i386-freebsd
/home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/lib/site_perl/5.16.0
/home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/lib/5.16.0/i386-freebsd
/home/cpansand/var/ctps/5160RC0/install/perl-5.16.0-RC0/lib/5.16.0
.