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From: metabase:user:322078bc-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-MLST-Check-1.133090 v5.8.9 MidnightBSD
Date: 2013-11-12T01:45:34Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear AJPAGE,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9142. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
PERL_DL_NONLAZY=1 /usr/home/cpan/pit/bare/perl-5.8.9/bin/perl "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/Blast/*.t t/CDC/*.t t/Download/*.t t/Input/*.t t/Output/*.t t/Overall/*.t t/SequenceTypes/*.t t/Settings/*.t
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Blast/BlastN.t ....................
Dubious, test returned 2 (wstat 512, 0x200)
All 1 subtests passed
Attribute (exec) does not pass the type constraint because: Validation failed for 'Bio::MLST::Executable' with value makeblastdb at constructor Bio::MLST::Blast::Database::new (defined at lib/Bio/MLST/Blast/Database.pm line 32) line 52.
Bio::MLST::Blast::Database::new("Bio::MLST::Blast::Database", "fasta_file", "t/data/contigs.fa") called at t/Blast/BlastN.t line 13
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 1.
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
Attribute (exec) does not pass the type constraint because: Validation failed for 'Bio::MLST::Executable' with value makeblastdb at constructor Bio::MLST::Blast::Database::new (defined at lib/Bio/MLST/Blast/Database.pm line 32) line 52.
Bio::MLST::Blast::Database::new("Bio::MLST::Blast::Database", "fasta_file", "t/data/contigs.fa") called at t/Blast/Database.t line 12
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 1.
t/Blast/Database.t ..................
Dubious, test returned 2 (wstat 512, 0x200)
All 1 subtests passed
Argument "2.07_02" isn't numeric in subroutine entry at lib/Bio/MLST/Download/Downloadable.pm line 10.
Attribute (exec) does not pass the type constraint because: Validation failed for 'Bio::MLST::Executable' with value makeblastdb at constructor Bio::MLST::Blast::Database::new (defined at lib/Bio/MLST/Blast/Database.pm line 32) line 45.
Bio::MLST::Blast::Database::new("Bio::MLST::Blast::Database", "fasta_file", "t/data/Streptococcus_pyogenes_emmST_contigs.fa", "exec", "makeblastdb") called at lib/Bio/MLST/CompareAlleles.pm line 42
Bio::MLST::CompareAlleles::_build__blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x802ec4290)) called at reader Bio::MLST::CompareAlleles::_blast_db_location_obj (defined at lib/Bio/MLST/CompareAlleles.pm line 22) line 7
Bio::MLST::CompareAlleles::_blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x802ec4290)) called at lib/Bio/MLST/CompareAlleles.pm line 36
Bio::MLST::CompareAlleles::_build__blast_db_location(Bio::MLST::CompareAlleles=HASH(0x802ec4290)) called at reader Bio::MLST::CompareAlleles::_blast_db_location (defined at lib/Bio/MLST/CompareAlleles.pm line 23) line 7
Bio::MLST::CompareAlleles::_blast_db_location(Bio::MLST::CompareAlleles=HASH(0x802ec4290)) called at lib/Bio/MLST/CompareAlleles.pm line 90
Bio::MLST::CompareAlleles::_build_matching_sequences(Bio::MLST::CompareAlleles=HASH(0x802ec4290)) called at reader Bio::MLST::CompareAlleles::matching_sequences (defined at lib/Bio/MLST/CompareAlleles.pm line 25) line 7
Bio::MLST::CompareAlleles::matching_sequences(Bio::MLST::CompareAlleles=HASH(0x802ec4290)) called at lib/Bio/MLST/ProcessFasta.pm line 51
Bio::MLST::ProcessFasta::_build__compare_alleles(Bio::MLST::ProcessFasta=HASH(0x802ec4680)) called at reader Bio::MLST::ProcessFasta::_compare_alleles (defined at lib/Bio/MLST/ProcessFasta.pm line 24) line 7
Bio::MLST::ProcessFasta::_compare_alleles(Bio::MLST::ProcessFasta=HASH(0x802ec4680)) called at lib/Bio/MLST/ProcessFasta.pm line 66
Bio::MLST::ProcessFasta::_build__sequence_type_obj(Bio::MLST::ProcessFasta=HASH(0x802ec4680)) called at reader Bio::MLST::ProcessFasta::_sequence_type_obj (defined at lib/Bio/MLST/ProcessFasta.pm line 25) line 7
Bio::MLST::ProcessFasta::_sequence_type_obj(Bio::MLST::ProcessFasta=HASH(0x802ec4680)) called at lib/Bio/MLST/ProcessFasta.pm line 75
Bio::MLST::ProcessFasta::_build__spreadsheet_row_obj(Bio::MLST::ProcessFasta=HASH(0x802ec4680)) called at reader Bio::MLST::ProcessFasta::_spreadsheet_row_obj (defined at lib/Bio/MLST/ProcessFasta.pm line 26) line 7
Bio::MLST::ProcessFasta::_spreadsheet_row_obj(Bio::MLST::ProcessFasta=HASH(0x802ec4680)) called at lib/Bio/MLST/Check.pm line 80
Bio::MLST::Check::_generate_spreadsheet_rows(Bio::MLST::Check=HASH(0x802ec3460)) called at lib/Bio/MLST/Check.pm line 102
Bio::MLST::Check::create_result_files(Bio::MLST::Check=HASH(0x802ec3460)) called at t/CDC/Convert.t line 48
Attribute (header) does not pass the type constraint because: Validation failed for 'ArrayRef' with value undef at constructor Bio::MLST::Spreadsheet::File::new (defined at lib/Bio/MLST/Spreadsheet/File.pm line 48) line 34, <ACTUAL> line 2.
Bio::MLST::Spreadsheet::File::new("Bio::MLST::Spreadsheet::File", "header", undef, "spreadsheet_allele_numbers_rows", ARRAY(0x802ec3f00), "spreadsheet_genomic_rows", ARRAY(0x802ec3a60), "output_directory", "/tmp/2yLKr6VKGF", "spreadsheet_basename", "mlst_results") called at lib/Bio/MLST/Check.pm line 105
Bio::MLST::Check::create_result_files(Bio::MLST::Check=HASH(0x802ec3460)) called at t/CDC/Convert.t line 48
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 13.
t/CDC/Convert.t .....................
Dubious, test returned 2 (wstat 512, 0x200)
All 13 subtests passed
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
Argument "2.07_02" isn't numeric in subroutine entry at lib/Bio/MLST/Download/Downloadable.pm line 10.
t/Download/Database.t ............... ok
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
Argument "2.07_02" isn't numeric in subroutine entry at lib/Bio/MLST/Download/Downloadable.pm line 10.
t/Download/Databases.t .............. ok
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Input/NormaliseFasta.t ............ ok
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Output/Databases.t ................ ok
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
Attribute (exec) does not pass the type constraint because: Validation failed for 'Bio::MLST::Executable' with value makeblastdb at constructor Bio::MLST::Blast::Database::new (defined at lib/Bio/MLST/Blast/Database.pm line 32) line 45.
Bio::MLST::Blast::Database::new("Bio::MLST::Blast::Database", "fasta_file", "t/data/contigs.fa", "exec", "makeblastdb") called at lib/Bio/MLST/CompareAlleles.pm line 42
Bio::MLST::CompareAlleles::_build__blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x8048f19c0)) called at reader Bio::MLST::CompareAlleles::_blast_db_location_obj (defined at lib/Bio/MLST/CompareAlleles.pm line 22) line 7
Bio::MLST::CompareAlleles::_blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x8048f19c0)) called at lib/Bio/MLST/CompareAlleles.pm line 36
Bio::MLST::CompareAlleles::_build__blast_db_location(Bio::MLST::CompareAlleles=HASH(0x8048f19c0)) called at reader Bio::MLST::CompareAlleles::_blast_db_location (defined at lib/Bio/MLST/CompareAlleles.pm line 23) line 7
Bio::MLST::CompareAlleles::_blast_db_location(Bio::MLST::CompareAlleles=HASH(0x8048f19c0)) called at lib/Bio/MLST/CompareAlleles.pm line 90
Bio::MLST::CompareAlleles::_build_matching_sequences(Bio::MLST::CompareAlleles=HASH(0x8048f19c0)) called at reader Bio::MLST::CompareAlleles::matching_sequences (defined at lib/Bio/MLST/CompareAlleles.pm line 25) line 7
Bio::MLST::CompareAlleles::matching_sequences(Bio::MLST::CompareAlleles=HASH(0x8048f19c0)) called at lib/Bio/MLST/ProcessFasta.pm line 51
Bio::MLST::ProcessFasta::_build__compare_alleles(Bio::MLST::ProcessFasta=HASH(0x8048eff30)) called at reader Bio::MLST::ProcessFasta::_compare_alleles (defined at lib/Bio/MLST/ProcessFasta.pm line 24) line 7
Bio::MLST::ProcessFasta::_compare_alleles(Bio::MLST::ProcessFasta=HASH(0x8048eff30)) called at lib/Bio/MLST/ProcessFasta.pm line 66
Bio::MLST::ProcessFasta::_build__sequence_type_obj(Bio::MLST::ProcessFasta=HASH(0x8048eff30)) called at reader Bio::MLST::ProcessFasta::_sequence_type_obj (defined at lib/Bio/MLST/ProcessFasta.pm line 25) line 7
Bio::MLST::ProcessFasta::_sequence_type_obj(Bio::MLST::ProcessFasta=HASH(0x8048eff30)) called at lib/Bio/MLST/ProcessFasta.pm line 75
Bio::MLST::ProcessFasta::_build__spreadsheet_row_obj(Bio::MLST::ProcessFasta=HASH(0x8048eff30)) called at reader Bio::MLST::ProcessFasta::_spreadsheet_row_obj (defined at lib/Bio/MLST/ProcessFasta.pm line 26) line 7
Bio::MLST::ProcessFasta::_spreadsheet_row_obj(Bio::MLST::ProcessFasta=HASH(0x8048eff30)) called at lib/Bio/MLST/Check.pm line 80
Bio::MLST::Check::_generate_spreadsheet_rows(Bio::MLST::Check=HASH(0x8048f1a10)) called at lib/Bio/MLST/Check.pm line 102
Bio::MLST::Check::create_result_files(Bio::MLST::Check=HASH(0x8048f1a10)) called at t/Output/MultipleFastas.t line 28
Attribute (header) does not pass the type constraint because: Validation failed for 'ArrayRef' with value undef at constructor Bio::MLST::Spreadsheet::File::new (defined at lib/Bio/MLST/Spreadsheet/File.pm line 48) line 34.
Bio::MLST::Spreadsheet::File::new("Bio::MLST::Spreadsheet::File", "header", undef, "spreadsheet_allele_numbers_rows", ARRAY(0x8048f1a60), "spreadsheet_genomic_rows", ARRAY(0x8048f1a80), "output_directory", "/tmp/9PImWD16zH", "spreadsheet_basename", "mlst_results") called at lib/Bio/MLST/Check.pm line 105
Bio::MLST::Check::create_result_files(Bio::MLST::Check=HASH(0x8048f1a10)) called at t/Output/MultipleFastas.t line 28
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 2.
t/Output/MultipleFastas.t ...........
Dubious, test returned 2 (wstat 512, 0x200)
All 2 subtests passed
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
Attribute (exec) does not pass the type constraint because: Validation failed for 'Bio::MLST::Executable' with value makeblastdb at constructor Bio::MLST::Blast::Database::new (defined at lib/Bio/MLST/Blast/Database.pm line 32) line 45.
Bio::MLST::Blast::Database::new("Bio::MLST::Blast::Database", "fasta_file", "t/data/contigs.fa", "exec", "makeblastdb") called at lib/Bio/MLST/CompareAlleles.pm line 42
Bio::MLST::CompareAlleles::_build__blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x800d65bf0)) called at reader Bio::MLST::CompareAlleles::_blast_db_location_obj (defined at lib/Bio/MLST/CompareAlleles.pm line 22) line 7
Bio::MLST::CompareAlleles::_blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x800d65bf0)) called at lib/Bio/MLST/CompareAlleles.pm line 36
Bio::MLST::CompareAlleles::_build__blast_db_location(Bio::MLST::CompareAlleles=HASH(0x800d65bf0)) called at reader Bio::MLST::CompareAlleles::_blast_db_location (defined at lib/Bio/MLST/CompareAlleles.pm line 23) line 7
Bio::MLST::CompareAlleles::_blast_db_location(Bio::MLST::CompareAlleles=HASH(0x800d65bf0)) called at lib/Bio/MLST/CompareAlleles.pm line 90
Bio::MLST::CompareAlleles::_build_matching_sequences(Bio::MLST::CompareAlleles=HASH(0x800d65bf0)) called at reader Bio::MLST::CompareAlleles::matching_sequences (defined at lib/Bio/MLST/CompareAlleles.pm line 25) line 7
Bio::MLST::CompareAlleles::matching_sequences(Bio::MLST::CompareAlleles=HASH(0x800d65bf0)) called at lib/Bio/MLST/ProcessFasta.pm line 51
Bio::MLST::ProcessFasta::_build__compare_alleles(Bio::MLST::ProcessFasta=HASH(0x800d65590)) called at reader Bio::MLST::ProcessFasta::_compare_alleles (defined at lib/Bio/MLST/ProcessFasta.pm line 24) line 7
Bio::MLST::ProcessFasta::_compare_alleles(Bio::MLST::ProcessFasta=HASH(0x800d65590)) called at lib/Bio/MLST/ProcessFasta.pm line 66
Bio::MLST::ProcessFasta::_build__sequence_type_obj(Bio::MLST::ProcessFasta=HASH(0x800d65590)) called at reader Bio::MLST::ProcessFasta::_sequence_type_obj (defined at lib/Bio/MLST/ProcessFasta.pm line 25) line 7
Bio::MLST::ProcessFasta::_sequence_type_obj(Bio::MLST::ProcessFasta=HASH(0x800d65590)) called at lib/Bio/MLST/ProcessFasta.pm line 75
Bio::MLST::ProcessFasta::_build__spreadsheet_row_obj(Bio::MLST::ProcessFasta=HASH(0x800d65590)) called at reader Bio::MLST::ProcessFasta::_spreadsheet_row_obj (defined at lib/Bio/MLST/ProcessFasta.pm line 26) line 7
Bio::MLST::ProcessFasta::_spreadsheet_row_obj(Bio::MLST::ProcessFasta=HASH(0x800d65590)) called at lib/Bio/MLST/Check.pm line 80
Bio::MLST::Check::_generate_spreadsheet_rows(Bio::MLST::Check=HASH(0x801e28ab0)) called at lib/Bio/MLST/Check.pm line 102
Bio::MLST::Check::create_result_files(Bio::MLST::Check=HASH(0x801e28ab0)) called at lib/Bio/MLST/CheckMultipleSpecies.pm line 113
Bio::MLST::CheckMultipleSpecies::_run_mlst_for_species_list(Bio::MLST::CheckMultipleSpecies=HASH(0x8039b2a30)) called at lib/Bio/MLST/CheckMultipleSpecies.pm line 230
Bio::MLST::CheckMultipleSpecies::create_result_files(Bio::MLST::CheckMultipleSpecies=HASH(0x8039b2a30)) called at t/Output/MultipleSpecies.t line 28
Attribute (header) does not pass the type constraint because: Validation failed for 'ArrayRef' with value undef at constructor Bio::MLST::Spreadsheet::File::new (defined at lib/Bio/MLST/Spreadsheet/File.pm line 48) line 34.
Bio::MLST::Spreadsheet::File::new("Bio::MLST::Spreadsheet::File", "header", undef, "spreadsheet_allele_numbers_rows", ARRAY(0x804659180), "spreadsheet_genomic_rows", ARRAY(0x804293fb0), "output_directory", "/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build"..., "spreadsheet_basename", 0001) called at lib/Bio/MLST/Check.pm line 105
Bio::MLST::Check::create_result_files(Bio::MLST::Check=HASH(0x801e28ab0)) called at lib/Bio/MLST/CheckMultipleSpecies.pm line 113
Bio::MLST::CheckMultipleSpecies::_run_mlst_for_species_list(Bio::MLST::CheckMultipleSpecies=HASH(0x8039b2a30)) called at lib/Bio/MLST/CheckMultipleSpecies.pm line 230
Bio::MLST::CheckMultipleSpecies::create_result_files(Bio::MLST::CheckMultipleSpecies=HASH(0x8039b2a30)) called at t/Output/MultipleSpecies.t line 28
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 2.
t/Output/MultipleSpecies.t ..........
Dubious, test returned 2 (wstat 512, 0x200)
All 2 subtests passed
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Output/OutputFasta.t .............. ok
Attribute (exec) does not pass the type constraint because: Validation failed for 'Bio::MLST::Executable' with value makeblastdb at constructor Bio::MLST::Blast::Database::new (defined at lib/Bio/MLST/Blast/Database.pm line 32) line 45.
Bio::MLST::Blast::Database::new("Bio::MLST::Blast::Database", "fasta_file", "t/data/contigs.fa", "exec", "makeblastdb") called at lib/Bio/MLST/CompareAlleles.pm line 42
Bio::MLST::CompareAlleles::_build__blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x80414fc00)) called at reader Bio::MLST::CompareAlleles::_blast_db_location_obj (defined at lib/Bio/MLST/CompareAlleles.pm line 22) line 7
Bio::MLST::CompareAlleles::_blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x80414fc00)) called at lib/Bio/MLST/CompareAlleles.pm line 36
Bio::MLST::CompareAlleles::_build__blast_db_location(Bio::MLST::CompareAlleles=HASH(0x80414fc00)) called at reader Bio::MLST::CompareAlleles::_blast_db_location (defined at lib/Bio/MLST/CompareAlleles.pm line 23) line 7
Bio::MLST::CompareAlleles::_blast_db_location(Bio::MLST::CompareAlleles=HASH(0x80414fc00)) called at lib/Bio/MLST/CompareAlleles.pm line 90
Bio::MLST::CompareAlleles::_build_matching_sequences(Bio::MLST::CompareAlleles=HASH(0x80414fc00)) called at reader Bio::MLST::CompareAlleles::matching_sequences (defined at lib/Bio/MLST/CompareAlleles.pm line 25) line 7
Bio::MLST::CompareAlleles::matching_sequences(Bio::MLST::CompareAlleles=HASH(0x80414fc00)) called at lib/Bio/MLST/CompareAlleles.pm line 61
Bio::MLST::CompareAlleles::found_sequence_names(Bio::MLST::CompareAlleles=HASH(0x80414fc00)) called at t/Output/SpreadsheetRow.t line 18
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 1.
t/Output/SpreadsheetRow.t ...........
Dubious, test returned 2 (wstat 512, 0x200)
All 1 subtests passed
Argument "2.07_02" isn't numeric in subroutine entry at lib/Bio/MLST/Download/Downloadable.pm line 10, <$lib> line 4.
t/Overall/CheckAllModulesCompile.t .. ok
# Failed test 'blastn in PATH'
# at t/requires_external.t line 8.
# Failed test 'makeblastdb in PATH'
# at t/requires_external.t line 8.
# Looks like you failed 2 tests of 2.
t/requires_external.t ...............
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/2 subtests
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
Attribute (exec) does not pass the type constraint because: Validation failed for 'Bio::MLST::Executable' with value makeblastdb at constructor Bio::MLST::Blast::Database::new (defined at lib/Bio/MLST/Blast/Database.pm line 32) line 45.
Bio::MLST::Blast::Database::new("Bio::MLST::Blast::Database", "fasta_file", "t/data/contigs.fa", "exec", "makeblastdb") called at lib/Bio/MLST/CompareAlleles.pm line 42
Bio::MLST::CompareAlleles::_build__blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x8042fc3a0)) called at reader Bio::MLST::CompareAlleles::_blast_db_location_obj (defined at lib/Bio/MLST/CompareAlleles.pm line 22) line 7
Bio::MLST::CompareAlleles::_blast_db_location_obj(Bio::MLST::CompareAlleles=HASH(0x8042fc3a0)) called at lib/Bio/MLST/CompareAlleles.pm line 36
Bio::MLST::CompareAlleles::_build__blast_db_location(Bio::MLST::CompareAlleles=HASH(0x8042fc3a0)) called at reader Bio::MLST::CompareAlleles::_blast_db_location (defined at lib/Bio/MLST/CompareAlleles.pm line 23) line 7
Bio::MLST::CompareAlleles::_blast_db_location(Bio::MLST::CompareAlleles=HASH(0x8042fc3a0)) called at lib/Bio/MLST/CompareAlleles.pm line 90
Bio::MLST::CompareAlleles::_build_matching_sequences(Bio::MLST::CompareAlleles=HASH(0x8042fc3a0)) called at reader Bio::MLST::CompareAlleles::matching_sequences (defined at lib/Bio/MLST/CompareAlleles.pm line 25) line 7
Bio::MLST::CompareAlleles::matching_sequences(Bio::MLST::CompareAlleles=HASH(0x8042fc3a0)) called at lib/Bio/MLST/CompareAlleles.pm line 61
Bio::MLST::CompareAlleles::found_sequence_names(Bio::MLST::CompareAlleles=HASH(0x8042fc3a0)) called at t/SequenceTypes/CompareAlleles.t line 17
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 2.
t/SequenceTypes/CompareAlleles.t ....
Dubious, test returned 2 (wstat 512, 0x200)
All 2 subtests passed
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/SequenceTypes/SearchForFiles.t .... ok
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/SequenceTypes/SequenceType.t ...... ok
Subroutine File::Slurp::O_CREAT redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Settings/DatabaseSettings.t ....... ok
Test Summary Report
-------------------
t/Blast/BlastN.t (Wstat: 512 Tests: 1 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/Blast/Database.t (Wstat: 512 Tests: 1 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/CDC/Convert.t (Wstat: 512 Tests: 13 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/Output/MultipleFastas.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/Output/MultipleSpecies.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/Output/SpreadsheetRow.t (Wstat: 512 Tests: 1 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/requires_external.t (Wstat: 512 Tests: 2 Failed: 2)
Failed tests: 1-2
Non-zero exit status: 2
t/SequenceTypes/CompareAlleles.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
Files=17, Tests=145, 38 wallclock secs ( 0.13 usr 0.13 sys + 16.89 cusr 13.63 csys = 30.79 CPU)
Result: FAIL
Failed 8/17 test programs. 2/145 subtests failed.
*** Error code 255
Stop in /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Bio-MLST-Check-1.133090.
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
Bio::AlignIO 0 0
Bio::Perl 0 0
Bio::PrimarySeq 0 0
Bio::SeqIO 0 0
Bio::SimpleAlign 0 0
Cwd 3.40 0
Data::Dumper 2.121_17 0
Env::Path 0.19 0
File::Basename 2.77 0
File::Copy 2.13 0
File::Path 2.07_02 2.06
File::Slurp 9999.19 0
File::Temp 0.2304 0
File::Which 1.09 0
Getopt::Long 2.37 0
LWP::Simple 6.00 0
Moose 2.1005 0
Moose::Role 2.1005 0
Moose::Util::TypeConstraints 2.1005 0
Parallel::ForkManager 1.05 0
Regexp::Common 2013031301 0
Test::Most 0.31 0
Text::CSV 1.32 0
XML::LibXML 2.0107 0
strict 1.03 0
warnings 1.05_01 0
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9142
CPANPLUS::Dist::Build 0.74
Cwd 3.40
ExtUtils::CBuilder 0.280212
ExtUtils::Command 1.16
ExtUtils::Install 1.54
ExtUtils::MakeMaker 6.80
ExtUtils::Manifest 1.63
ExtUtils::ParseXS 3.22
File::Spec 3.40
Module::Build 0.4007
Pod::Parser 1.35
Pod::Simple 3.28
Test::Harness 3.29
Test::More 0.99
version 0.9904
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 0.90.
Powered by minismokebox version 0.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Bio-MLST-Check-1.133090/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Moose-2.1005/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-0.36/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/libwww-perl-6.05/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Which-1.09/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Env-Path-0.19/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/BioPerl-1.6.922/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Stag-0.14/blib/script:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/home/cpan/bin
PERL5LIB = :/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IO-String-1.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IO-String-1.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Stag-0.14/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Stag-0.14/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-StackTrace-1.30/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-StackTrace-1.30/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Exception-Class-1.37/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Exception-Class-1.37/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Tester-0.109/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Tester-0.109/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-NoWarnings-1.04/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-NoWarnings-1.04/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Deep-0.110/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Deep-0.110/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Dumper-2.145/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Dumper-2.145/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-Diff-1.1902/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-Diff-1.1902/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-Diff-1.41/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-Diff-1.41/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Differences-0.61/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Differences-0.61/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Uplevel-0.24/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Uplevel-0.24/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Exception-0.32/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Exception-0.32/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Carp-1.32/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Carp-1.32/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Tree-DAG_Node-1.18/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Tree-DAG_Node-1.18/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Warn-0.24/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Warn-0.24/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Most-0.31/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Most-0.31/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/URI-1.60/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/URI-1.60/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/BioPerl-1.6.922/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/BioPerl-1.6.922/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Env-Path-0.19/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Env-Path-0.19/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IPC-Run3-0.046/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IPC-Run3-0.046/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Probe-Perl-0.03/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Probe-Perl-0.03/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Script-1.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Script-1.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Which-1.09/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Which-1.09/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Encode-Locale-1.03/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Encode-Locale-1.03/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Date-6.02/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Date-6.02/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Listing-6.04/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Listing-6.04/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTML-Tagset-3.20/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTML-Tagset-3.20/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTML-Parser-3.71/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTML-Parser-3.71/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IO-HTML-1.00/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IO-HTML-1.00/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/LWP-MediaTypes-6.02/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/LWP-MediaTypes-6.02/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Message-6.06/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Message-6.06/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Cookies-6.01/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Cookies-6.01/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Daemon-6.01/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Daemon-6.01/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Negotiate-6.01/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Negotiate-6.01/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Net-HTTP-6.06/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Net-HTTP-6.06/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/WWW-RobotRules-6.02/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/WWW-RobotRules-6.02/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/libwww-perl-6.05/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/libwww-perl-6.05/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-Check-0.008/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-Check-0.008/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Params-Util-1.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Params-Util-1.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Install-0.927/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Install-0.927/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-OptList-0.108/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-OptList-0.108/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Runtime-0.013/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Runtime-0.013/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Try-Tiny-0.18/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Try-Tiny-0.18/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Fatal-0.013/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Fatal-0.013/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Requires-0.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Requires-0.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Implementation-0.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Implementation-0.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/List-MoreUtils-0.33/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/List-MoreUtils-0.33/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Dist-CheckConflicts-0.09/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Dist-CheckConflicts-0.09/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-XS-0.28/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-XS-0.28/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-0.36/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-0.36/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-0.20/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-0.20/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-XS-0.06/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-XS-0.06/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-XS-0.01/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-XS-0.01/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-Progressive-0.001011/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-Progressive-0.001011/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-0.12/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-0.12/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Eval-Closure-0.11/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Eval-Closure-0.11/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-C3-0.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-C3-0.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-XS-0.13/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-XS-0.13/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-Hide-0.0009/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-Hide-0.0009/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-0.25/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-0.25/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/MRO-Compat-0.12/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/MRO-Compat-0.12/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-DeprecationManager-0.13/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-DeprecationManager-0.13/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-0.987/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-0.987/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Name-0.05/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Name-0.05/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Task-Weaken-1.04/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Task-Weaken-1.04/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-CheckDeps-0.010/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-CheckDeps-0.010/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Moose-2.1005/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Moose-2.1005/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Parallel-ForkManager-1.05/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Parallel-ForkManager-1.05/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Regexp-Common-2013031301/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Regexp-Common-2013031301/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-CSV-1.32/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-CSV-1.32/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-NamespaceSupport-1.11/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-NamespaceSupport-1.11/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-SAX-Base-1.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-SAX-Base-1.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-SAX-0.99/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-SAX-0.99/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-LibXML-2.0107/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-LibXML-2.0107/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Bio-MLST-Check-1.133090/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Bio-MLST-Check-1.133090/blib/arch
PERL5_CPANPLUS_IS_RUNNING = 84365
PERL5_CPANPLUS_IS_VERSION = 0.9142
PERL5_MINISMOKEBOX = 0.58
PERL5_YACSMOKE_BASE = /usr/home/cpan/pit/bare/conf/perl-5.8.9
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/local/bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /usr/home/cpan/pit/bare/perl-5.8.9/bin/perl
UID: $< = 1002
EUID: $> = 1002
GID: $( = 1002 1002 1002
EGID: $) = 1002 1002 1002
-------------------------------
--
Summary of my perl5 (revision 5 version 8 subversion 9) configuration:
Platform:
osname=midnightbsd, osvers=0.3-release, archname=amd64-midnightbsd
uname='midnightbsd macho.bingosnet.co.uk 0.3-release midnightbsd 0.3-release #0: sun jan 30 20:56:57 utc 2011 root@ds9.midnightbsd.org.:usrobjusrsrcsysgeneric amd64 '
config_args='-des -Dprefix=/usr/home/cpan/pit/bare/perl-5.8.9'
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -I/usr/local/include',
optimize='-O',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.2.1 20070719 [MidnightBSD]', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-Wl,-E -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib
libs=-lgdbm -lm -lcrypt -lutil -lc
perllibs=-lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: PERL_MALLOC_WRAP USE_64_BIT_ALL USE_64_BIT_INT
USE_FAST_STDIO USE_LARGE_FILES USE_PERLIO
Built under midnightbsd
Compiled at Feb 10 2013 11:49:41
%ENV:
PERL5LIB=":/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IO-String-1.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IO-String-1.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Stag-0.14/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Stag-0.14/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-StackTrace-1.30/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-StackTrace-1.30/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Exception-Class-1.37/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Exception-Class-1.37/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Tester-0.109/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Tester-0.109/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-NoWarnings-1.04/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-NoWarnings-1.04/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Deep-0.110/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Deep-0.110/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Dumper-2.145/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Dumper-2.145/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-Diff-1.1902/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-Diff-1.1902/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-Diff-1.41/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-Diff-1.41/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Differences-0.61/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Differences-0.61/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Uplevel-0.24/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Uplevel-0.24/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Exception-0.32/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Exception-0.32/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Carp-1.32/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Carp-1.32/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Tree-DAG_Node-1.18/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Tree-DAG_Node-1.18/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Warn-0.24/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Warn-0.24/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Most-0.31/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Most-0.31/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/URI-1.60/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/URI-1.60/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/BioPerl-1.6.922/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/BioPerl-1.6.922/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Env-Path-0.19/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Env-Path-0.19/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IPC-Run3-0.046/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IPC-Run3-0.046/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Probe-Perl-0.03/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Probe-Perl-0.03/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Script-1.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Script-1.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Which-1.09/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Which-1.09/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Encode-Locale-1.03/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Encode-Locale-1.03/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Date-6.02/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/HTTP-Date-6.02/blib/arch:/usr/home/cpan/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anplus/5.8.9/build/Devel-GlobalDestruction-XS-0.01/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-Progressive-0.001011/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-Progressive-0.001011/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-0.12/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-0.12/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Eval-Closure-0.11/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Eval-Closure-0.11/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-C3-0.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-C3-0.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-XS-0.13/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-XS-0.13/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-Hide-0.0009/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-Hide-0.0009/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-0.25/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-0.25/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/MRO-Compat-0.12/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/MRO-Compat-0.12/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-DeprecationManager-0.13/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-DeprecationManager-0.13/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-0.987/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-0.987/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Name-0.05/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Name-0.05/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Task-Weaken-1.04/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Task-Weaken-1.04/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-CheckDeps-0.010/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-CheckDeps-0.010/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Moose-2.1005/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Moose-2.1005/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Parallel-ForkManager-1.05/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Parallel-ForkManager-1.05/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Regexp-Common-2013031301/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Regexp-Common-2013031301/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-CSV-1.32/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-CSV-1.32/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-NamespaceSupport-1.11/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-NamespaceSupport-1.11/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-SAX-Base-1.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-SAX-Base-1.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-SAX-0.99/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-SAX-0.99/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-LibXML-2.0107/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/XML-LibXML-2.0107/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Bio-MLST-Check-1.133090/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Bio-MLST-Check-1.133090/blib/arch"
PERL5_CPANPLUS_IS_RUNNING="84365"
PERL5_CPANPLUS_IS_VERSION="0.9142"
PERL5_MINISMOKEBOX="0.58"
PERL5_YACSMOKE_BASE="/usr/home/cpan/pit/bare/conf/perl-5.8.9"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IO-String-1.08/blib/lib
/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/IO-String-1.08/blib/arch
/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Stag-0.14/blib/lib
/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Stag-0.14/blib/arch
/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/lib
/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/arch
/usr/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-StackTrace-1.30/blib/lib
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