Report for Bio-Biblio-1.70

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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-Biblio-1.70 v5.22.3 RC4 GNU/Linux
Date: 2016-12-27T10:28:05Z

This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear carandraug,

This is a computer-generated report for Bio-Biblio-1.70
on perl 5.22.3, created by CPAN-Reporter-1.2018.

Thank you for uploading your work to CPAN.  However, there was a problem
testing your distribution.

If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:

http://wiki.cpantesters.org/wiki/CPANAuthorNotes

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 "/bbbike/perl-5.22.3-RC4t/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ............ ok
t/Biblio.t ................ ok

syntax error at line 1, column 0, byte 0 at /opt/perl-5.22.3-RC4t/lib/site_perl/5.22.3/x86_64-linux-thread-multi/XML/Parser.pm line 187.
# Looks like your test exited with 255 just after 2.
t/biofetch.t .............. 
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/10 subtests 
t/eutils.t ................ ok
t/References.t ............ ok
t/release-eol.t ........... skipped: these tests are for release candidate testing
t/release-mojibake.t ...... skipped: these tests are for release candidate testing
t/release-no-tabs.t ....... skipped: these tests are for release candidate testing
t/release-pod-coverage.t .. skipped: these tests are for release candidate testing
t/release-pod-syntax.t .... skipped: these tests are for release candidate testing

Test Summary Report
-------------------
t/biofetch.t            (Wstat: 65280 Tests: 2 Failed: 0)
  Non-zero exit status: 255
  Parse errors: Bad plan.  You planned 10 tests but ran 2.
Files=10, Tests=601,  7 wallclock secs ( 0.06 usr  0.04 sys +  2.00 cusr  0.61 csys =  2.71 CPU)
Result: FAIL
Failed 1/10 test programs. 0/601 subtests failed.
Makefile:1095: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                  Need Have    
    ----------------------- ---- --------
    Bio::Annotation::DBLink 0    1.007001
    Bio::DB::DBFetch        0    0       
    Bio::Root::IO           0    0       
    Bio::Root::Root         0    1.007001
    Bio::Root::RootI        0    0       
    Data::Dumper            0    2.158   
    Getopt::Std             0    1.11    
    LWP::Simple             0    6.15    
    parent                  0    0.232   
    SOAP::Lite              0    1.20    
    strict                  0    1.09    
    Symbol                  0    1.07    
    URI::Escape             0    3.31    
    utf8                    0    1.17    
    vars                    0    1.03    
    warnings                0    1.34    
    XML::Parser             0    2.44    
    XML::Twig               0    3.49    

build_requires:

    Module                  Need Have    
    ----------------------- ---- --------
    File::Find              0    1.29    
    File::Spec              0    3.56_02 
    File::Temp              0    0.2304  
    Test::More              0    1.302059

configure_requires:

    Module                  Need Have    
    ----------------------- ---- --------
    ExtUtils::MakeMaker     6.30 7.04_02 


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    LANG = C
    PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
    PERL5LIB = /home/cpansand/.cpan/build/2016122709/SOAP-Lite-1.20-bX9Qca/blib/arch:/home/cpansand/.cpan/build/2016122709/SOAP-Lite-1.20-bX9Qca/blib/lib:/home/cpansand/.cpan/build/2016122709/XML-Parser-Lite-0.721-4OWgs6/blib/arch:/home/cpansand/.cpan/build/2016122709/XML-Parser-Lite-0.721-4OWgs6/blib/lib:/home/cpansand/.cpan/build/2016122709/IO-SessionData-1.03-ejcZDX/blib/arch:/home/cpansand/.cpan/build/2016122709/IO-SessionData-1.03-ejcZDX/blib/lib:/home/cpansand/.cpan/build/2016122709/BioPerl-1.007001-pNB9BY/blib/arch:/home/cpansand/.cpan/build/2016122709/BioPerl-1.007001-pNB9BY/blib/lib:/home/cpansand/.cpan/build/2016122709/Data-Stag-0.14-9B91f5/blib/arch:/home/cpansand/.cpan/build/2016122709/Data-Stag-0.14-9B91f5/blib/lib
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 25189
    PERL5_CPAN_IS_RUNNING = 25189
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 28378,25189
    PERLDOC = -MPod::Perldoc::ToTextOverstrike
    PERL_BATCH = yes
    PERL_CANARY_STABILITY_NOPROMPT = 1
    PERL_CPAN_REPORTER_CONFIG = /run/user/1023/cpansmoker/2016122709/cpanreporter_000_config.ini
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_USE_UNSAFE_INC = 1
    SHELL = /bin/zsh
    TERM = screen
    TMPDIR = /run/user/1023/cpansmoker/2016122709

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /bbbike/perl-5.22.3-RC4t/bin/perl
    $UID/$EUID = 1023 / 1023
    $GID = 1023 1023
    $EGID = 1023 1023

Perl module toolchain versions installed:

    Module              Have      
    ------------------- ----------
    CPAN                2.11_01   
    CPAN::Meta          2.150001  
    Cwd                 3.56_02   
    ExtUtils::CBuilder  0.280221  
    ExtUtils::Command   1.20_01   
    ExtUtils::Install   2.04      
    ExtUtils::MakeMaker 7.04_02   
    ExtUtils::Manifest  1.70      
    ExtUtils::ParseXS   3.28      
    File::Spec          3.56_02   
    JSON                2.90      
    JSON::PP            2.27300_01
    Module::Build       0.4220    
    Module::Signature   n/a       
    Parse::CPAN::Meta   1.4414_001
    Test::Harness       3.35_01   
    Test::More          1.302059  
    YAML                1.18      
    YAML::Syck          1.29      
    version             0.9909    


--

Summary of my perl5 (revision 5 version 22 subversion 3) configuration:
   
  Platform:
    osname=linux, osvers=3.16.0-4-amd64, archname=x86_64-linux-thread-multi
    uname='linux eserte 3.16.0-4-amd64 #1 smp debian 3.16.36-1+deb8u1 (2016-09-03) x86_64 gnulinux '
    config_args='-ds -e -Dprefix=/opt/perl-5.22.3-RC4t -Dusethreads -Dcf_email=srezic@cpan.org'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=define, usemultiplicity=define
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
    optimize='-O2',
    cppflags='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
    ccversion='', gccversion='4.9.2', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
    libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/4.9/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
    libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
    perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
    libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.19'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
                        PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
                        PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
                        PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
                        USE_64_BIT_ALL USE_64_BIT_INT USE_ITHREADS
                        USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
                        USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
                        USE_PERLIO USE_PERL_ATOF USE_REENTRANT_API
  Locally applied patches:
	RC4
  Built under linux
  Compiled at Oct 13 2016 19:15:21
  %ENV:
    PERL5LIB="/home/cpansand/.cpan/build/2016122709/SOAP-Lite-1.20-bX9Qca/blib/arch:/home/cpansand/.cpan/build/2016122709/SOAP-Lite-1.20-bX9Qca/blib/lib:/home/cpansand/.cpan/build/2016122709/XML-Parser-Lite-0.721-4OWgs6/blib/arch:/home/cpansand/.cpan/build/2016122709/XML-Parser-Lite-0.721-4OWgs6/blib/lib:/home/cpansand/.cpan/build/2016122709/IO-SessionData-1.03-ejcZDX/blib/arch:/home/cpansand/.cpan/build/2016122709/IO-SessionData-1.03-ejcZDX/blib/lib:/home/cpansand/.cpan/build/2016122709/BioPerl-1.007001-pNB9BY/blib/arch:/home/cpansand/.cpan/build/2016122709/BioPerl-1.007001-pNB9BY/blib/lib:/home/cpansand/.cpan/build/2016122709/Data-Stag-0.14-9B91f5/blib/arch:/home/cpansand/.cpan/build/2016122709/Data-Stag-0.14-9B91f5/blib/lib"
    PERL5OPT=""
    PERL5_CPANPLUS_IS_RUNNING="25189"
    PERL5_CPAN_IS_RUNNING="25189"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="28378,25189"
    PERLDOC="-MPod::Perldoc::ToTextOverstrike"
    PERL_BATCH="yes"
    PERL_CANARY_STABILITY_NOPROMPT="1"
    PERL_CPAN_REPORTER_CONFIG="/run/user/1023/cpansmoker/2016122709/cpanreporter_000_config.ini"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
    PERL_USE_UNSAFE_INC="1"
  @INC:
    /home/cpansand/.cpan/build/2016122709/SOAP-Lite-1.20-bX9Qca/blib/arch
    /home/cpansand/.cpan/build/2016122709/SOAP-Lite-1.20-bX9Qca/blib/lib
    /home/cpansand/.cpan/build/2016122709/XML-Parser-Lite-0.721-4OWgs6/blib/arch
    /home/cpansand/.cpan/build/2016122709/XML-Parser-Lite-0.721-4OWgs6/blib/lib
    /home/cpansand/.cpan/build/2016122709/IO-SessionData-1.03-ejcZDX/blib/arch
    /home/cpansand/.cpan/build/2016122709/IO-SessionData-1.03-ejcZDX/blib/lib
    /home/cpansand/.cpan/build/2016122709/BioPerl-1.007001-pNB9BY/blib/arch
    /home/cpansand/.cpan/build/2016122709/BioPerl-1.007001-pNB9BY/blib/lib
    /home/cpansand/.cpan/build/2016122709/Data-Stag-0.14-9B91f5/blib/arch
    /home/cpansand/.cpan/build/2016122709/Data-Stag-0.14-9B91f5/blib/lib
    /opt/perl-5.22.3-RC4t/lib/site_perl/5.22.3/x86_64-linux-thread-multi
    /opt/perl-5.22.3-RC4t/lib/site_perl/5.22.3
    /opt/perl-5.22.3-RC4t/lib/5.22.3/x86_64-linux-thread-multi
    /opt/perl-5.22.3-RC4t/lib/5.22.3
    .