Back
From: metabase:user:320bfe00-2aae-11df-837a-5e0a49663a4f
Subject: FAIL go-perl-0.15 v5.21.1 GNU/Linux
Date: 2014-06-12T04:29:48Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for go-perl-0.15
on perl 5.21.1, created by CPAN-Reporter-1.2011.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /tmp/basesmoker-reloperl-mvvJ/bin/perl "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
t/t170chadoxml.t ......... ok
t/t175chadoxml_oborel.t .. ok
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
t/t260oborel_in_chado.t .. ok
compilation error: file GO/xsl/oboxml_to_owl.xsl line 818 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
compilation error: file GO/xsl/oboxml_to_owl.xsl line 863 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.29475.go-with-local-id-mapping.obo-1.xml > TMP.29475.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_owl.xsl", "TMP.29475.go-with-local-id-mapping.obo-1.xml", "TMP.29475.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0xe54f40), "./t/data/go-with-local-id-mapping.obo") called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 5 (wstat 1280, 0x500)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t270oborel_in_owl.t (Wstat: 1280 Tests: 0 Failed: 0)
Non-zero exit status: 5
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=136, 4 wallclock secs ( 0.12 usr 0.03 sys + 3.07 cusr 0.10 csys = 3.32 CPU)
Result: FAIL
Failed 1/24 test programs. 0/136 subtests failed.
Makefile:1552: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -----
Data::Dumper 0 2.152
Data::Stag 0.07 0.14
build_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 6.98
configure_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 6.98
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LANGUAGE = en_US:en
PATH = /usr/lib/ccache:/home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 26331
PERL5_CPAN_IS_RUNNING = 26331
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /tmp/basesmoker-reloperl-mvvJ/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.05
CPAN::Meta 2.141520
Cwd 3.48
ExtUtils::CBuilder 0.280216
ExtUtils::Command 1.18
ExtUtils::Install 1.68
ExtUtils::MakeMaker 6.98
ExtUtils::Manifest 1.63
ExtUtils::ParseXS 3.24
File::Spec 3.48
JSON 2.90
JSON::PP 2.27203
Module::Build 0.4205
Module::Signature 0.73
Parse::CPAN::Meta 1.4414
Test::Harness 3.32
Test::More 1.001003
YAML 0.92
YAML::Syck 1.27
version 0.9908
--
Summary of my perl5 (revision 5 version 21 subversion 1) configuration:
Commit id: 12042f245aac321ffbf751d9553175eb0b6dc98f
Platform:
osname=linux, osvers=3.14-1-amd64, archname=x86_64-linux
uname='linux k83 3.14-1-amd64 #1 smp debian 3.14.5-1 (2014-06-05) x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/perl/v5.21.0-342-g12042f2/165a -Dmyhostname=k83 -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Uuseithreads -Uuselongdouble -DDEBUGGING=-g'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2 -g',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.8.3', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/4.8/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
PERL_USE_DEVEL USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Jun 11 2014 16:34:18
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="26331"
PERL5_CPAN_IS_RUNNING="26331"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/sand/src/perl/repoperls/installed-perls/perl/v5.21.0-342-g12042f2/165a/lib/site_perl/5.21.1/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/perl/v5.21.0-342-g12042f2/165a/lib/site_perl/5.21.1
/home/sand/src/perl/repoperls/installed-perls/perl/v5.21.0-342-g12042f2/165a/lib/5.21.1/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/perl/v5.21.0-342-g12042f2/165a/lib/5.21.1
.