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From: metabase:user:313dc9fe-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Data-Babel-Client-0.02 v5.12.3 GNU/Linux
Date: 2011-04-12T13:53:27Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Victor Cassen,
This is a computer-generated report for Data-Babel-Client-0.02
on perl 5.12.3, created by CPAN-Reporter-1.1902.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Testing Data::Babel::Client 0.02, Perl 5.012003, /home/perl5123/perl5123/perl
t/00-load.t ............... ok
# Failed test 'found protein_uniprot_symbol'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_nature_name'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_reactome_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_reactome_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_agilent_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found protein_ncbi_genbank'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_nature_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found function_go_description'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_affy_gpl'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_kegg_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found sequence_agilent'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_lumi_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found gene_rgd'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_agilent_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found transcript_ncbi_genbank'
# at t/10-test_idtypes.t line 39.
# Failed test 'found probe_agilent'
# at t/10-test_idtypes.t line 39.
# Failed test 'found transcript_ncbi_genbank_gi'
# at t/10-test_idtypes.t line 39.
# Failed test 'found gene_mgi'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_affy_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found protein_ncbi_genbank_gi'
# at t/10-test_idtypes.t line 39.
# Failed test 'found protein_uniprot_description'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_kegg_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_agilent_gpl'
# at t/10-test_idtypes.t line 39.
# Failed test 'found publication_pubmed'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_biocarta_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_lumi_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found mutation_cosmic_mutated'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_lumi_gpl'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_affy_id'
# at t/10-test_idtypes.t line 39.
# Looks like you failed 29 tests of 82.
t/10-test_idtypes.t .......
Dubious, test returned 29 (wstat 7424, 0x1d00)
Failed 29/82 subtests
t/11-test_translate.t ..... ok
t/12-test_missing_args.t .. ok
t/13-test_bad_args.t ...... ok
t/manifest.t .............. skipped: Author tests not required for installation
t/pod-coverage.t .......... ok
t/pod.t ................... ok
Test Summary Report
-------------------
t/10-test_idtypes.t (Wstat: 7424 Tests: 82 Failed: 29)
Failed tests: 2-3, 10-14, 17-21, 30, 35, 40-41, 48, 53
56-57, 60, 63-65, 68-69, 72-74
Non-zero exit status: 29
Files=8, Tests=125, 14 wallclock secs ( 0.06 usr 0.04 sys + 2.11 cusr 0.42 csys = 2.63 CPU)
Result: FAIL
Failed 1/8 test programs. 29/125 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
build_requires:
Module Need Have
--------------------- ---- ------
Carp 0 1.17
Class::AutoClass 1.54 1.54
Data::Dumper 0 2.125
HTTP::Request::Common 0 6.00
JSON 0 2.51
LWP::UserAgent 0 6.02
Test::More 0 0.98
configure_requires:
Module Need Have
--------------------- ---- ------
Module::Build 0.36 0.3800
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PERL5LIB = /home/perl5123/.cpan/build/JSON-2.51-8XuxAt/blib/arch:/home/perl5123/.cpan/build/JSON-2.51-8XuxAt/blib/lib:/home/perl5123/.cpan/build/common-sense-3.4-K4wCT2/blib/arch:/home/perl5123/.cpan/build/common-sense-3.4-K4wCT2/blib/lib:/home/perl5123/.cpan/build/JSON-XS-2.3-JDTIaB/blib/arch:/home/perl5123/.cpan/build/JSON-XS-2.3-JDTIaB/blib/lib:/home/perl5123/.cpan/build/Class-AutoClass-1.54-jHxMAE/blib/arch:/home/perl5123/.cpan/build/Class-AutoClass-1.54-jHxMAE/blib/lib:/home/perl5123/.cpan/build/Hash-AutoHash-Args-1.12-EdsN2F/blib/arch:/home/perl5123/.cpan/build/Hash-AutoHash-Args-1.12-EdsN2F/blib/lib:/home/perl5123/.cpan/build/Hash-AutoHash-1.12-2E4at2/blib/arch:/home/perl5123/.cpan/build/Hash-AutoHash-1.12-2E4at2/blib/lib:/home/perl5123/.cpan/build/List-MoreUtils-0.30-qXiO3M/blib/arch:/home/perl5123/.cpan/build/List-MoreUtils-0.30-qXiO3M/blib/lib:/home/perl5123/.cpan/build/Test-NoWarnings-1.02-hlllFY/blib/arch:/home/perl5123/.cpan/build/Test-NoWarnings-1.02-hlllFY/blib/lib:/home/perl5123/.cpan/build/Test-Deep-0.108-bxf6pr/blib/arch:/home/perl5123/.cpan/build/Test-Deep-0.108-bxf6pr/blib/lib:/home/perl5123/.cpan/build/Test-Tester-0.107-W3sklj/blib/arch:/home/perl5123/.cpan/build/Test-Tester-0.107-W3sklj/blib/lib:/home/perl5123/.cpan/build/Tie-Hash-MultiValue-1.02-n7TfhM/blib/arch:/home/perl5123/.cpan/build/Tie-Hash-MultiValue-1.02-n7TfhM/blib/lib:/home/perl5123/.cpan/build/Tie-ToObject-0.03-EFjw5E/blib/arch:/home/perl5123/.cpan/build/Tie-ToObject-0.03-EFjw5E/blib/lib:/home/perl5123/.cpan/build/Test-use-ok-0.02-IiHxdY/blib/arch:/home/perl5123/.cpan/build/Test-use-ok-0.02-IiHxdY/blib/lib:/home/perl5123/.cpan/build/IO-stringy-2.110-HQIGPp/blib/arch:/home/perl5123/.cpan/build/IO-stringy-2.110-HQIGPp/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 31057
PERL5_CPAN_IS_RUNNING = 31057
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 23029,31057
PERL_CR_SMOKER_CURRENT = Data-Babel-Client-0.02
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = xterm
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/perl5123/perl5123/perl
$UID/$EUID = 1002 / 1002
$GID = 1002 1002
$EGID = 1002 1002
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.94_56
Cwd 3.31
ExtUtils::CBuilder 0.280202
ExtUtils::Command 1.16
ExtUtils::Install 1.55
ExtUtils::MakeMaker 6.56
ExtUtils::Manifest 1.57
ExtUtils::ParseXS 2.21
File::Spec 3.31_01
Module::Build 0.3800
Module::Signature n/a
Test::Harness 3.17
Test::More 0.98
YAML 0.72
YAML::Syck 1.17
version 0.88
--
Summary of my perl5 (revision 5 version 12 subversion 3) configuration:
Platform:
osname=linux, osvers=2.6.35-27-generic, archname=i686-linux-thread-multi-64int-ld
uname='linux st47-laptop 2.6.35-27-generic #47-ubuntu smp fri feb 11 21:01:29 utc 2011 i686 gnulinux '
config_args=''
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=undef, uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.4.5', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long long', ivsize=8, nvtype='long double', nvsize=12, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib /usr/lib64
libs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=/lib/libc-2.12.1.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.12.1'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP USE_64_BIT_INT
USE_ITHREADS USE_LARGE_FILES USE_LONG_DOUBLE
USE_PERLIO USE_PERL_ATOF USE_REENTRANT_API
Built under linux
Compiled at Apr 6 2011 11:41:28
%ENV:
PERL5LIB="/home/perl5123/.cpan/build/JSON-2.51-8XuxAt/blib/arch:/home/perl5123/.cpan/build/JSON-2.51-8XuxAt/blib/lib:/home/perl5123/.cpan/build/common-sense-3.4-K4wCT2/blib/arch:/home/perl5123/.cpan/build/common-sense-3.4-K4wCT2/blib/lib:/home/perl5123/.cpan/build/JSON-XS-2.3-JDTIaB/blib/arch:/home/perl5123/.cpan/build/JSON-XS-2.3-JDTIaB/blib/lib:/home/perl5123/.cpan/build/Class-AutoClass-1.54-jHxMAE/blib/arch:/home/perl5123/.cpan/build/Class-AutoClass-1.54-jHxMAE/blib/lib:/home/perl5123/.cpan/build/Hash-AutoHash-Args-1.12-EdsN2F/blib/arch:/home/perl5123/.cpan/build/Hash-AutoHash-Args-1.12-EdsN2F/blib/lib:/home/perl5123/.cpan/build/Hash-AutoHash-1.12-2E4at2/blib/arch:/home/perl5123/.cpan/build/Hash-AutoHash-1.12-2E4at2/blib/lib:/home/perl5123/.cpan/build/List-MoreUtils-0.30-qXiO3M/blib/arch:/home/perl5123/.cpan/build/List-MoreUtils-0.30-qXiO3M/blib/lib:/home/perl5123/.cpan/build/Test-NoWarnings-1.02-hlllFY/blib/arch:/home/perl5123/.cpan/build/Test-NoWarnings-1.02-hlllFY/blib/lib:/home/perl5123/.cpan/build/Test-Deep-0.108-bxf6pr/blib/arch:/home/perl5123/.cpan/build/Test-Deep-0.108-bxf6pr/blib/lib:/home/perl5123/.cpan/build/Test-Tester-0.107-W3sklj/blib/arch:/home/perl5123/.cpan/build/Test-Tester-0.107-W3sklj/blib/lib:/home/perl5123/.cpan/build/Tie-Hash-MultiValue-1.02-n7TfhM/blib/arch:/home/perl5123/.cpan/build/Tie-Hash-MultiValue-1.02-n7TfhM/blib/lib:/home/perl5123/.cpan/build/Tie-ToObject-0.03-EFjw5E/blib/arch:/home/perl5123/.cpan/build/Tie-ToObject-0.03-EFjw5E/blib/lib:/home/perl5123/.cpan/build/Test-use-ok-0.02-IiHxdY/blib/arch:/home/perl5123/.cpan/build/Test-use-ok-0.02-IiHxdY/blib/lib:/home/perl5123/.cpan/build/IO-stringy-2.110-HQIGPp/blib/arch:/home/perl5123/.cpan/build/IO-stringy-2.110-HQIGPp/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="31057"
PERL5_CPAN_IS_RUNNING="31057"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="23029,31057"
PERL_CR_SMOKER_CURRENT="Data-Babel-Client-0.02"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/perl5123/.cpan/build/JSON-2.51-8XuxAt/blib/arch
/home/perl5123/.cpan/build/JSON-2.51-8XuxAt/blib/lib
/home/perl5123/.cpan/build/common-sense-3.4-K4wCT2/blib/arch
/home/perl5123/.cpan/build/common-sense-3.4-K4wCT2/blib/lib
/home/perl5123/.cpan/build/JSON-XS-2.3-JDTIaB/blib/arch
/home/perl5123/.cpan/build/JSON-XS-2.3-JDTIaB/blib/lib
/home/perl5123/.cpan/build/Class-AutoClass-1.54-jHxMAE/blib/arch
/home/perl5123/.cpan/build/Class-AutoClass-1.54-jHxMAE/blib/lib
/home/perl5123/.cpan/build/Hash-AutoHash-Args-1.12-EdsN2F/blib/arch
/home/perl5123/.cpan/build/Hash-AutoHash-Args-1.12-EdsN2F/blib/lib
/home/perl5123/.cpan/build/Hash-AutoHash-1.12-2E4at2/blib/arch
/home/perl5123/.cpan/build/Hash-AutoHash-1.12-2E4at2/blib/lib
/home/perl5123/.cpan/build/List-MoreUtils-0.30-qXiO3M/blib/arch
/home/perl5123/.cpan/build/List-MoreUtils-0.30-qXiO3M/blib/lib
/home/perl5123/.cpan/build/Test-NoWarnings-1.02-hlllFY/blib/arch
/home/perl5123/.cpan/build/Test-NoWarnings-1.02-hlllFY/blib/lib
/home/perl5123/.cpan/build/Test-Deep-0.108-bxf6pr/blib/arch
/home/perl5123/.cpan/build/Test-Deep-0.108-bxf6pr/blib/lib
/home/perl5123/.cpan/build/Test-Tester-0.107-W3sklj/blib/arch
/home/perl5123/.cpan/build/Test-Tester-0.107-W3sklj/blib/lib
/home/perl5123/.cpan/build/Tie-Hash-MultiValue-1.02-n7TfhM/blib/arch
/home/perl5123/.cpan/build/Tie-Hash-MultiValue-1.02-n7TfhM/blib/lib
/home/perl5123/.cpan/build/Tie-ToObject-0.03-EFjw5E/blib/arch
/home/perl5123/.cpan/build/Tie-ToObject-0.03-EFjw5E/blib/lib
/home/perl5123/.cpan/build/Test-use-ok-0.02-IiHxdY/blib/arch
/home/perl5123/.cpan/build/Test-use-ok-0.02-IiHxdY/blib/lib
/home/perl5123/.cpan/build/IO-stringy-2.110-HQIGPp/blib/arch
/home/perl5123/.cpan/build/IO-stringy-2.110-HQIGPp/blib/lib
/home/perl5123/perl5123/lib/site_perl/5.12.3/i686-linux-thread-multi-64int-ld
/home/perl5123/perl5123/lib/site_perl/5.12.3
/home/perl5123/perl5123/lib/5.12.3/i686-linux-thread-multi-64int-ld
/home/perl5123/perl5123/lib/5.12.3
.