BioPerl v1.7.5 Perl 5 v5.30.0 RC2 x86_64-linux
- Status
- Pass
- From
- Slaven Rezić (SREZIC)
- Dist
-
BioPerl v1.7.5
- Platform
- Perl 5 v5.30.0 RC2 x86_64-linux
- Date
- 2019-05-22 02:28:14
- ID
- 404b8f30-7c39-11e9-94e7-ab3a1f24ea8f
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear carandraug,
This is a computer-generated report for BioPerl-1.7.5
on perl 5.30.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/opt/perl-5.30.0-RC2/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/Align/*.t t/AlignIO/*.t t/Annotation/*.t t/LocalDB/*.t t/LocalDB/Index/*.t t/LocalDB/Taxonomy/*.t t/Matrix/*.t t/Matrix/IO/*.t t/Ontology/*.t t/Ontology/IO/*.t t/RemoteDB/*.t t/Root/*.t t/SearchIO/*.t t/SearchIO/Writer/*.t t/Seq/*.t t/SeqFeature/*.t t/SeqIO/*.t t/SeqTools/*.t t/Tools/*.t t/Tools/Alignment/*.t t/Tools/EMBOSS/*.t t/Tools/Phylo/*.t t/Tools/Phylo/Phylip/*.t t/Tools/Signalp/*.t t/Tools/Spidey/*.t t/Tree/*.t t/Tree/TreeIO/*.t
t/00-compile.t ...................... ok
t/Align/AlignStats.t ................ ok
t/Align/AlignUtil.t ................. ok
t/Align/SimpleAlign.t ............... ok
t/Align/TreeBuild.t ................. ok
t/Align/Utilities.t ................. ok
t/AlignIO/AlignIO.t ................. ok
t/AlignIO/arp.t ..................... ok
t/AlignIO/bl2seq.t .................. ok
t/AlignIO/clustalw.t ................ ok
t/AlignIO/emboss.t .................. ok
t/AlignIO/fasta.t ................... ok
t/AlignIO/largemultifasta.t ......... ok
t/AlignIO/maf.t ..................... ok
t/AlignIO/mase.t .................... ok
t/AlignIO/mega.t .................... ok
t/AlignIO/meme.t .................... ok
t/AlignIO/metafasta.t ............... ok
t/AlignIO/msf.t ..................... ok
t/AlignIO/nexus.t ................... ok
t/AlignIO/pfam.t .................... ok
t/AlignIO/phylip.t .................. ok
t/AlignIO/po.t ...................... ok
t/AlignIO/prodom.t .................. ok
t/AlignIO/psi.t ..................... ok
t/AlignIO/selex.t ................... ok
t/AlignIO/xmfa.t .................... ok
t/Annotation/Annotation.t ........... ok
t/Annotation/AnnotationAdaptor.t .... ok
t/author-mojibake.t ................. skipped: these tests are for testing by the author
t/author-pod-syntax.t ............... skipped: these tests are for testing by the author
t/LocalDB/Fasta.t ................... ok
t/LocalDB/Flat.t .................... ok
t/LocalDB/Index/Blast.t ............. ok
t/LocalDB/Index/BlastTable.t ........ ok
t/LocalDB/Index/Index.t ............. ok
t/LocalDB/Qual.t .................... ok
--------------------- WARNING ---------------------
MSG: Couldn't load Bio::DB::BioFetch
---------------------------------------------------
--------------------- WARNING ---------------------
MSG: Couldn't load Bio::DB::BioFetch
---------------------------------------------------
t/LocalDB/Registry.t ................ ok
t/LocalDB/Taxonomy/greengenes.t ..... ok
t/LocalDB/Taxonomy/silva.t .......... ok
t/Matrix/InstanceSite.t ............. ok
t/Matrix/IO/masta.t ................. ok
t/Matrix/IO/psm.t ................... ok
t/Matrix/Matrix.t ................... ok
t/Matrix/ProtMatrix.t ............... ok
t/Matrix/ProtPsm.t .................. ok
t/Matrix/SiteMatrix.t ............... ok
t/Ontology/GOterm.t ................. ok
t/Ontology/GraphAdaptor.t ........... ok
t/Ontology/IO/go.t .................. ok
t/Ontology/IO/interpro.t ............ ok
t/Ontology/IO/obo.t ................. ok
t/Ontology/Ontology.t ............... ok
t/Ontology/OntologyEngine.t ......... ok
t/Ontology/OntologyStore.t .......... ok
t/Ontology/Relationship.t ........... ok
t/Ontology/RelationshipType.t ....... ok
t/Ontology/Term.t ................... ok
t/RemoteDB/SeqRead_fail.t ........... ok
t/RemoteDB/Taxonomy.t ............... ok
t/Root/Exception.t .................. ok
t/Root/HTTPget.t .................... ok
t/Root/IO.t ......................... ok
t/Root/RootI.t ...................... ok
t/Root/RootIO.t ..................... ok
t/Root/Storable.t ................... ok
--------------------- WARNING ---------------------
MSG: find_exe: Multiple paths to 'gzip' found. Using /usr/bin/gzip.
---------------------------------------------------
--------------------- WARNING ---------------------
MSG: find_exe: Multiple paths to 'gzip' found. Using /usr/bin/gzip.
---------------------------------------------------
--------------------- WARNING ---------------------
MSG: find_exe: Multiple paths to 'gunzip' found. Using /usr/bin/gunzip.
---------------------------------------------------
--------------------- WARNING ---------------------
MSG: find_exe: Multiple paths to 'gzip' found. Using /usr/bin/gzip.
---------------------------------------------------
--------------------- WARNING ---------------------
MSG: find_exe: Multiple paths to 'gunzip' found. Using /usr/bin/gunzip.
---------------------------------------------------
t/Root/Utilities.t .................. ok
t/SearchIO/axt.t .................... ok
t/SearchIO/blast.t .................. ok
t/SearchIO/blast_pull.t ............. ok
t/SearchIO/blasttable.t ............. ok
t/SearchIO/CigarString.t ............ ok
t/SearchIO/cross_match.t ............ ok
t/SearchIO/erpin.t .................. ok
t/SearchIO/exonerate.t .............. ok
t/SearchIO/fasta.t .................. ok
t/SearchIO/gmap_f9.t ................ ok
t/SearchIO/infernal.t ............... ok
t/SearchIO/megablast.t .............. ok
t/SearchIO/psl.t .................... ok
t/SearchIO/rnamotif.t ............... ok
t/SearchIO/SearchIO.t ............... ok
t/SearchIO/sim4.t ................... ok
t/SearchIO/SimilarityPair.t ......... ok
t/SearchIO/Tiling.t ................. ok
t/SearchIO/waba.t ................... ok
t/SearchIO/wise.t ................... ok
t/SearchIO/Writer/GbrowseGFF.t ...... ok
t/SearchIO/Writer/HitTableWriter.t .. ok
t/SearchIO/Writer/HSPTableWriter.t .. ok
t/SearchIO/Writer/HTMLWriter.t ...... ok
t/SearchIO/Writer/TextWriter.t ...... ok
t/Seq/DBLink.t ...................... ok
t/Seq/EncodedSeq.t .................. ok
t/Seq/LargeLocatableSeq.t ........... ok
t/Seq/LargePSeq.t ................... ok
t/Seq/LocatableSeq.t ................ ok
t/Seq/MetaSeq.t ..................... ok
t/Seq/PrimaryQual.t ................. ok
t/Seq/PrimarySeq.t .................. ok
t/Seq/PrimedSeq.t ................... ok
t/Seq/Quality.t ..................... ok
t/Seq/Seq.t ......................... ok
t/Seq/SimulatedRead.t ............... ok
t/SeqFeature/Amplicon.t ............. ok
t/SeqFeature/Clone.t ................ ok
t/SeqFeature/Collection.t ........... ok
t/SeqFeature/Computation.t .......... ok
t/SeqFeature/FeaturePair.t .......... ok
t/SeqFeature/Gene.t ................. ok
t/SeqFeature/Generic.t .............. ok
t/SeqFeature/Location.t ............. ok
t/SeqFeature/LocationFactory.t ...... ok
t/SeqFeature/Primer.t ............... ok
t/SeqFeature/Range.t ................ ok
t/SeqFeature/RangeI.t ............... ok
t/SeqFeature/SeqAnalysisParser.t .... ok
t/SeqFeature/SubSeq.t ............... ok
t/SeqFeature/Unflattener.t .......... ok
t/SeqIO/ace.t ....................... ok
t/SeqIO/asciitree.t ................. ok
t/SeqIO/bsml.t ...................... ok
t/SeqIO/bsml_sax.t .................. ok
t/SeqIO/embl.t ...................... ok
t/SeqIO/fasta.t ..................... ok
t/SeqIO/fastq.t ..................... ok
t/SeqIO/game.t ...................... ok
t/SeqIO/gbxml.t ..................... ok
t/SeqIO/gcg.t ....................... ok
t/SeqIO/genbank.t ................... ok
t/SeqIO/Handler.t ................... ok
t/SeqIO/interpro.t .................. ok
t/SeqIO/kegg.t ...................... ok
t/SeqIO/largefasta.t ................ ok
t/SeqIO/locuslink.t ................. ok
t/SeqIO/mbsout.t .................... ok
t/SeqIO/metafasta.t ................. ok
t/SeqIO/msout.t ..................... ok
t/SeqIO/MultiFile.t ................. ok
t/SeqIO/Multiple_fasta.t ............ ok
t/SeqIO/phd.t ....................... ok
t/SeqIO/pir.t ....................... ok
t/SeqIO/qual.t ...................... ok
t/SeqIO/raw.t ....................... ok
t/SeqIO/scf.t ....................... ok
t/SeqIO/SeqBuilder.t ................ ok
t/SeqIO/SeqIO.t ..................... ok
t/SeqIO/seqxml.t .................... ok
t/SeqIO/Splicedseq.t ................ ok
t/SeqIO/swiss.t ..................... ok
t/SeqIO/tab.t ....................... ok
t/SeqIO/table.t ..................... ok
t/SeqIO/tigr.t ...................... ok
t/SeqIO/tigrxml.t ................... ok
t/SeqIO/tinyseq.t ................... ok
t/SeqTools/Backtranslate.t .......... ok
t/SeqTools/CodonTable.t ............. ok
t/SeqTools/ECnumber.t ............... ok
t/SeqTools/GuessSeqFormat.t ......... ok
t/SeqTools/OddCodes.t ............... ok
t/SeqTools/SeqPattern.t ............. ok
t/SeqTools/SeqStats.t ............... ok
t/SeqTools/SeqUtils.t ............... ok
t/SeqTools/SeqWords.t ............... ok
t/Species.t ......................... ok
t/Tools/Alignment/Consed.t .......... ok
t/Tools/AmpliconSearch.t ............ ok
t/Tools/EMBOSS/Palindrome.t ......... ok
t/Tools/ePCR.t ...................... ok
t/Tools/Est2Genome.t ................ ok
t/Tools/FootPrinter.t ............... ok
t/Tools/Geneid.t .................... ok
t/Tools/Genewise.t .................. ok
t/Tools/Genomewise.t ................ ok
t/Tools/Genpred.t ................... ok
t/Tools/GFF.t ....................... ok
t/Tools/IUPAC.t ..................... ok
t/Tools/Lucy.t ...................... ok
t/Tools/Match.t ..................... ok
t/Tools/Phylo/Gerp.t ................ ok
t/Tools/Phylo/Molphy.t .............. ok
t/Tools/Phylo/Phylip/ProtDist.t ..... ok
t/Tools/pICalculator.t .............. ok
t/Tools/Primer3.t ................... ok
t/Tools/Promoterwise.t .............. ok
t/Tools/PrositeScan.t ............... ok
t/Tools/Pseudowise.t ................ ok
t/Tools/QRNA.t ...................... ok
t/Tools/RandDistFunctions.t ......... ok
t/Tools/RepeatMasker.t .............. ok
t/Tools/Seg.t ....................... ok
t/Tools/Sigcleave.t ................. ok
t/Tools/Signalp.t ................... ok
t/Tools/Signalp/ExtendedSignalp.t ... ok
t/Tools/Sim4.t ...................... ok
t/Tools/Spidey/Spidey.t ............. ok
t/Tools/TandemRepeatsFinder.t ....... ok
t/Tools/TargetP.t ................... ok
t/Tools/Tmhmm.t ..................... ok
t/Tools/tRNAscanSE.t ................ ok
t/Tree/Compatible.t ................. ok
t/Tree/Node.t ....................... ok
t/Tree/RandomTreeFactory.t .......... ok
t/Tree/Tree.t ....................... ok
t/Tree/TreeIO.t ..................... ok
t/Tree/TreeIO/lintree.t ............. ok
t/Tree/TreeIO/newick.t .............. ok
t/Tree/TreeIO/nexus.t ............... ok
t/Tree/TreeIO/nhx.t ................. ok
t/Tree/TreeIO/phyloxml.t ............ ok
t/Tree/TreeIO/tabtree.t ............. ok
t/Tree/TreeStatistics.t ............. ok
All tests successful.
Files=212, Tests=14858, 153 wallclock secs ( 2.49 usr 0.49 sys + 101.77 cusr 49.78 csys = 154.53 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------------------- ----- ----------
AnyDBM_File 0 1.01
base 0 2.27
Carp 0 1.50
constant 0 1.33
Cwd 0 3.78
Data::Dumper 0 2.174
Data::Stag 0 0.14
DB_File 0 1.843
DBI 0 1.642
Digest::MD5 0 2.55
Dumpvalue 0 1.18
Env 0 1.04
Error 0 0.17027
Exporter 0 5.73
Fcntl 0 1.13
File::Basename 0 2.85
File::Copy 0 2.34
File::Path 0 2.16
File::Spec 0 3.78
File::Spec::Functions 0 3.78
File::Temp 0 0.2309
FileHandle 0 2.03
GD 0 2.71
Getopt::Long 0 2.5
Graph::Directed 0 0
HTTP::Request::Common 0 6.18
HTTP::Response 0 6.18
integer 0 1.01
IO::File 0 1.40
IO::Handle 0 1.40
IO::Pipe 0 1.40
IO::Scalar 0 2.111
IO::Socket 0 1.40
IO::String 0 1.08
IPC::Run 0 20180523.0
List::MoreUtils 0 0.428
List::Util 0 1.50
LWP::UserAgent 0 6.39
Math::BigFloat 0 1.999816
Module::Build 0 0.4229
overload 0 1.30
parent 0 0.237
perl 5.006 5.030000
Pod::Usage 0 1.69
POSIX 0 1.88
Scalar::Util 0 1.50
Set::Scalar 0 1.29
Storable 0 3.15
strict 0 1.11
Symbol 0 1.08
Test::Builder 0 1.302162
Test::Builder::Module 0 1.302162
Test::Most 0 0.35
Test::RequiresInternet 0 0.05
Text::Balanced 0 2.03
Text::Wrap 0 2013.0523
Tie::Handle 0 4.2
Tie::RefHash 0 1.39
Time::HiRes 0 1.9760
UNIVERSAL 0 1.13
URI 0 1.76
utf8 0 1.22
vars 0 1.05
version 0 0.9924
warnings 0 1.44
XML::DOM 0 1.46
XML::DOM::XPath 0 0.14
XML::LibXML 0 2.0200
XML::LibXML::Reader 0 2.0200
XML::Parser::PerlSAX 0 0.08
XML::SAX 0 1.00
XML::SAX::Base 0 1.09
XML::SAX::Writer 0 0.57
XML::Twig 0 3.52
XML::Writer 0 0.625
YAML 0 1.29
build_requires:
Module Need Have
---------------------- ----- ----------
ExtUtils::MakeMaker 0 7.34
File::Spec 0 3.78
IO::Handle 0 1.40
IPC::Open3 0 1.20
Test::Memory::Cycle 0 1.06
Test::More 0 1.302162
Test::Weaken 0 3.022000
configure_requires:
Module Need Have
---------------------- ----- ----------
ExtUtils::MakeMaker 0 7.34
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB = /home/cpansand/.cpan/build/2019052204/XML-Writer-0.625-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-Writer-0.625-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-DOM-XPath-0.14-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-DOM-XPath-0.14-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-XPathEngine-0.14-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-XPathEngine-0.14-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-Weaken-3.022000-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-Weaken-3.022000-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Set-Scalar-1.29-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Set-Scalar-1.29-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Graph-0.9704-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Graph-0.9704-0/blib/lib:/home/cpansand/.cpan/build/2019052204/GD-2.71-0/blib/arch:/home/cpansand/.cpan/build/2019052204/GD-2.71-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Pod-Spell-CommonMistakes-1.002-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Pod-Spell-CommonMistakes-1.002-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Pod-Spell-1.20-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Pod-Spell-1.20-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Lingua-EN-Inflect-1.904-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Lingua-EN-Inflect-1.904-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-Kwalitee-1.28-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-Kwalitee-1.28-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Module-CPANTS-Analyse-1.00-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Module-CPANTS-Analyse-1.00-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Software-License-0.103014-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Software-License-0.103014-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Text-Template-1.55-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Text-Template-1.55-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-More-UTF8-0.05-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-More-UTF8-0.05-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Data-Section-0.200007-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Data-Section-0.200007-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Perl-PrereqScanner-NotQuiteLite-0.9905-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Perl-PrereqScanner-NotQuiteLite-0.9905-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Regexp-Trie-0.02-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Regexp-Trie-0.02-0/blib/lib:/home/cpansand/.cpan/build/2019052204/File-Find-Object-v0.3.2-0/blib/arch:/home/cpansand/.cpan/build/2019052204/File-Find-Object-v0.3.2-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Data-Binary-0.01-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Data-Binary-0.01-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Array-Diff-0.09-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Array-Diff-0.09-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Archive-Any-Lite-0.11-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Archive-Any-Lite-0.11-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-UseAllModules-0.17-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-UseAllModules-0.17-0/blib/lib:/home/cpansand/.cpan/build/2019052204/ExtUtils-MakeMaker-CPANfile-0.09-0/blib/arch:/home/cpansand/.cpan/build/2019052204/ExtUtils-MakeMaker-CPANfile-0.09-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Module-CPANfile-1.1004-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Module-CPANfile-1.1004-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-Fork-0.02-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-Fork-0.02-0/blib/lib:/home/cpansand/.cpan/build/2019052204/ExtUtils-PkgConfig-1.16-0/blib/arch:/home/cpansand/.cpan/build/2019052204/ExtUtils-PkgConfig-1.16-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Data-Stag-0.14-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Data-Stag-0.14-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Spreadsheet-WriteExcel-2.40-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Spreadsheet-WriteExcel-2.40-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Parse-RecDescent-1.967015-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Parse-RecDescent-1.967015-0/blib/lib:/home/cpansand/.cpan/build/2019052204/OLE-Storage_Lite-0.19-0/blib/arch:/home/cpansand/.cpan/build/2019052204/OLE-Storage_Lite-0.19-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Webservice-InterMine-1.0405-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Webservice-InterMine-1.0405-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-DTDParser-2.01-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-DTDParser-2.01-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-Rules-1.16-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-Rules-1.16-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-DOM-1.46-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-DOM-1.46-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-RegExp-0.04-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-RegExp-0.04-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-Compare-0.05-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-Compare-0.05-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-SAX-Writer-0.57-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-SAX-Writer-0.57-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-Filter-BufferText-1.01-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-Filter-BufferText-1.01-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-XPath-1.44-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-XPath-1.44-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-XML-0.08-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-XML-0.08-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-SemanticDiff-1.0007-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-SemanticDiff-1.0007-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-MockObject-1.20180705-2/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-MockObject-1.20180705-2/blib/lib:/home/cpansand/.cpan/build/2019052204/UNIVERSAL-isa-1.20171012-2/blib/arch:/home/cpansand/.cpan/build/2019052204/UNIVERSAL-isa-1.20171012-2/blib/lib:/home/cpansand/.cpan/build/2019052204/UNIVERSAL-can-1.20140328-2/blib/arch:/home/cpansand/.cpan/build/2019052204/UNIVERSAL-can-1.20140328-2/blib/lib:/home/cpansand/.cpan/build/2019052204/Set-Object-1.39-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Set-Object-1.39-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Set-CrossProduct-2.003-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Set-CrossProduct-2.003-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Perl6-Junction-1.60000-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Perl6-Junction-1.60000-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Module-Find-0.13-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Module-Find-0.13-0/blib/lib:/home/cpansand/.cpan/build/2019052204/InterMine-Model-0.9904-0/blib/arch:/home/cpansand/.cpan/build/2019052204/InterMine-Model-0.9904-0/blib/lib:/home/cpansand/.cpan/build/2019052204/libxml-perl-0.08-0/blib/arch:/home/cpansand/.cpan/build/2019052204/libxml-perl-0.08-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-Distribution-2.00-1/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-Distribution-2.00-1/blib/lib:/home/cpansand/.cpan/build/2019052204/DateTime-Format-ISO8601-0.08-1/blib/arch:/home/cpansand/.cpan/build/2019052204/DateTime-Format-ISO8601-0.08-1/blib/lib:/home/cpansand/.cpan/build/2019052204/DateTime-Format-Builder-0.82-1/blib/arch:/home/cpansand/.cpan/build/2019052204/DateTime-Format-Builder-0.82-1/blib/lib:/home/cpansand/.cpan/build/2019052204/DateTime-Format-Strptime-1.76-1/blib/arch:/home/cpansand/.cpan/build/2019052204/DateTime-Format-Strptime-1.76-1/blib/lib:/home/cpansand/.cpan/build/2019052204/Class-InsideOut-1.14-1/blib/arch:/home/cpansand/.cpan/build/2019052204/Class-InsideOut-1.14-1/blib/lib:/home/cpansand/.cpan/build/2019052204/Class-ISA-0.36-1/blib/arch:/home/cpansand/.cpan/build/2019052204/Class-ISA-0.36-1/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-CompareML-0.2.12-1/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-CompareML-0.2.12-1/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 1273
PERL5_CPAN_IS_RUNNING = 1273
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 20143,1273
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2019052122/cpanreporter_002_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2019052122
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.30.0-RC2/bin/perl
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.22
CPAN::Meta 2.150010
Cwd 3.78
ExtUtils::CBuilder 0.280231
ExtUtils::Command 7.34
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.72
ExtUtils::ParseXS 3.40
File::Spec 3.78
JSON 4.02
JSON::PP 4.02
Module::Build 0.4229
Module::Signature 0.83
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302162
YAML 1.29
YAML::Syck 1.31
version 0.9924
--
Summary of my perl5 (revision 5 version 30 subversion 0) configuration:
Platform:
osname=linux
osvers=3.10.0-957.12.2.el7.x86_64
archname=x86_64-linux
uname='linux centos-4gb-hel1-1 3.10.0-957.12.2.el7.x86_64 #1 smp tue may 14 21:24:32 utc 2019 x86_64 x86_64 x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.30.0-RC2 -Dcf_email=srezic@cpan.org'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2'
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='4.8.5 20150623 (Red Hat 4.8.5-36)'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib /lib/../lib64 /usr/lib/../lib64 /lib /lib64 /usr/lib64 /usr/local/lib64
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.17.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.17'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Locally applied patches:
RC2
Built under linux
Compiled at May 20 2019 08:18:08
%ENV:
PERL5LIB="/home/cpansand/.cpan/build/2019052204/XML-Writer-0.625-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-Writer-0.625-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-DOM-XPath-0.14-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-DOM-XPath-0.14-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-XPathEngine-0.14-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-XPathEngine-0.14-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-Weaken-3.022000-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-Weaken-3.022000-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Set-Scalar-1.29-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Set-Scalar-1.29-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Graph-0.9704-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Graph-0.9704-0/blib/lib:/home/cpansand/.cpan/build/2019052204/GD-2.71-0/blib/arch:/home/cpansand/.cpan/build/2019052204/GD-2.71-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Pod-Spell-CommonMistakes-1.002-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Pod-Spell-CommonMistakes-1.002-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Pod-Spell-1.20-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Pod-Spell-1.20-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Lingua-EN-Inflect-1.904-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Lingua-EN-Inflect-1.904-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-Kwalitee-1.28-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-Kwalitee-1.28-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Module-CPANTS-Analyse-1.00-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Module-CPANTS-Analyse-1.00-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Software-License-0.103014-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Software-License-0.103014-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Text-Template-1.55-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Text-Template-1.55-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-More-UTF8-0.05-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-More-UTF8-0.05-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Data-Section-0.200007-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Data-Section-0.200007-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Perl-PrereqScanner-NotQuiteLite-0.9905-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Perl-PrereqScanner-NotQuiteLite-0.9905-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Regexp-Trie-0.02-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Regexp-Trie-0.02-0/blib/lib:/home/cpansand/.cpan/build/2019052204/File-Find-Object-v0.3.2-0/blib/arch:/home/cpansand/.cpan/build/2019052204/File-Find-Object-v0.3.2-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Data-Binary-0.01-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Data-Binary-0.01-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Array-Diff-0.09-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Array-Diff-0.09-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Archive-Any-Lite-0.11-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Archive-Any-Lite-0.11-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-UseAllModules-0.17-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-UseAllModules-0.17-0/blib/lib:/home/cpansand/.cpan/build/2019052204/ExtUtils-MakeMaker-CPANfile-0.09-0/blib/arch:/home/cpansand/.cpan/build/2019052204/ExtUtils-MakeMaker-CPANfile-0.09-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Module-CPANfile-1.1004-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Module-CPANfile-1.1004-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Test-Fork-0.02-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Test-Fork-0.02-0/blib/lib:/home/cpansand/.cpan/build/2019052204/ExtUtils-PkgConfig-1.16-0/blib/arch:/home/cpansand/.cpan/build/2019052204/ExtUtils-PkgConfig-1.16-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Data-Stag-0.14-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Data-Stag-0.14-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Spreadsheet-WriteExcel-2.40-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Spreadsheet-WriteExcel-2.40-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Parse-RecDescent-1.967015-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Parse-RecDescent-1.967015-0/blib/lib:/home/cpansand/.cpan/build/2019052204/OLE-Storage_Lite-0.19-0/blib/arch:/home/cpansand/.cpan/build/2019052204/OLE-Storage_Lite-0.19-0/blib/lib:/home/cpansand/.cpan/build/2019052204/Webservice-InterMine-1.0405-0/blib/arch:/home/cpansand/.cpan/build/2019052204/Webservice-InterMine-1.0405-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-DTDParser-2.01-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-DTDParser-2.01-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-Rules-1.16-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-Rules-1.16-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-DOM-1.46-0/blib/arch:/home/cpansand/.cpan/build/2019052204/XML-DOM-1.46-0/blib/lib:/home/cpansand/.cpan/build/2019052204/XML-RegExp-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PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="1273"
PERL5_CPAN_IS_RUNNING="1273"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="20143,1273"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2019052122/cpanreporter_002_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
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/opt/perl-5.30.0-RC2/lib/site_perl/5.30.0/x86_64-linux
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/opt/perl-5.30.0-RC2/lib/5.30.0/x86_64-linux
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.