BioX-SeqUtils-Promoter v0.0.8 Perl 5 v5.12.1 i86pc-solaris
- Status
- Fail
- From
- Graham Crookham (GRAHAMC)
- Dist
-
BioX-SeqUtils-Promoter v0.0.8
- Platform
- Perl 5 v5.12.1 i86pc-solaris
- Date
- 2010-08-07 10:12:32
- ID
- 4ad7ea2c-a20c-11df-b20a-cfbd4b0a0ecd
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Charles Stephen Embry,
This is a computer-generated report for BioX-SeqUtils-Promoter-0.0.8
on perl 5.12.1, created by CPAN-Reporter-1.18.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Testing BioX::SeqUtils::Promoter 0.0.8
t/00.load.t ....... ok
t/10.length.t ..... ok
# Failed test 'use BioX::SeqUtils::Promoter::Alignment;'
# at t/10.load.t line 10.
# Tried to use 'BioX::SeqUtils::Promoter::Alignment'.
# Error: Can't locate DBIx/MySperql.pm in @INC (@INC contains: /export/home/graham/perltest/cpan/build/BioX-SeqUtils-Promoter-RzRrQu/blib/lib /export/home/graham/perltest/cpan/build/BioX-SeqUtils-Promoter-RzRrQu/blib/arch /export/home/graham/perltest/perl/lib/site_perl/5.12.1/i86pc-solaris /export/home/graham/perltest/perl/lib/site_perl/5.12.1 /export/home/graham/perltest/perl/lib/5.12.1/i86pc-solaris /export/home/graham/perltest/perl/lib/5.12.1 .) at /export/home/graham/perltest/cpan/build/BioX-SeqUtils-Promoter-RzRrQu/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# BEGIN failed--compilation aborted at /export/home/graham/perltest/cpan/build/BioX-SeqUtils-Promoter-RzRrQu/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# Compilation failed in require at /export/home/graham/perltest/cpan/build/BioX-SeqUtils-Promoter-RzRrQu/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# BEGIN failed--compilation aborted at /export/home/graham/perltest/cpan/build/BioX-SeqUtils-Promoter-RzRrQu/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# Compilation failed in require at (eval 9) line 2.
# BEGIN failed--compilation aborted at (eval 9) line 2.
# Failed test 'use BioX::SeqUtils::Promoter::Annotations::Consensus;'
# at t/10.load.t line 34.
# Tried to use 'BioX::SeqUtils::Promoter::Annotations::Consensus'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Annotations/Consensus.pm aborted.
# Compilation failed in require at (eval 15) line 2.
# BEGIN failed--compilation aborted at (eval 15) line 2.
# Failed test 'use BioX::SeqUtils::Promoter::SaveTypes::RImage;'
# at t/10.load.t line 58.
# Tried to use 'BioX::SeqUtils::Promoter::SaveTypes::RImage'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Alignment.pm aborted.
# Compilation failed in require at /export/home/graham/perltest/cpan/build/BioX-SeqUtils-Promoter-RzRrQu/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# BEGIN failed--compilation aborted at /export/home/graham/perltest/cpan/build/BioX-SeqUtils-Promoter-RzRrQu/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# Compilation failed in require at (eval 19) line 2.
# BEGIN failed--compilation aborted at (eval 19) line 2.
# Testing BioX::SeqUtils::Promoter 0.0.8
Use of uninitialized value $BioX::SeqUtils::Promoter::Alignment::VERSION in concatenation (.) or string at t/10.load.t line 13.
# Testing BioX::SeqUtils::Promoter::Alignment
# Testing BioX::SeqUtils::Promoter::Annotations 0.0.8
# Testing BioX::SeqUtils::Promoter::Annotations::Base 0.0.8
# Testing BioX::SeqUtils::Promoter::Annotations::CG 0.0.8
Use of uninitialized value $BioX::SeqUtils::Promoter::Annotations::Consensus::VERSION in concatenation (.) or string at t/10.load.t line 37.
# Testing BioX::SeqUtils::Promoter::Annotations::Consensus
# Testing BioX::SeqUtils::Promoter::Base 0.0.8
# Testing BioX::SeqUtils::Promoter::SaveTypes 0.0.8
# Testing BioX::SeqUtils::Promoter::SaveTypes::Base 0.0.8
Use of uninitialized value $BioX::SeqUtils::Promoter::SaveTypes::RImage::VERSION in concatenation (.) or string at t/10.load.t line 61.
# Testing BioX::SeqUtils::Promoter::SaveTypes::RImage
# Testing BioX::SeqUtils::Promoter::SaveTypes::Text 0.0.8
# Testing BioX::SeqUtils::Promoter::Sequence 0.0.8
# Testing BioX::SeqUtils::Promoter::Sequences 0.0.8
# Looks like you failed 3 tests of 13.
t/10.load.t .......
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/13 subtests
Argument "ATGCGNTTANTCG" isn't numeric in numeric eq (==) at t/10.sequence.t line 23.
Argument "ATGCGNTTANTCG" isn't numeric in numeric eq (==) at t/10.sequence.t line 23.
t/10.sequence.t ... ok
Name "main::tstring3" used only once: possible typo at t/10.sequences.t line 7.
t/10.sequences.t ..
Failed 1/2 subtests
t/11.new.t ........ ok
Test Summary Report
-------------------
t/10.load.t (Wstat: 768 Tests: 13 Failed: 3)
Failed tests: 2, 6, 10
Non-zero exit status: 3
t/10.sequences.t (Wstat: 0 Tests: 1 Failed: 0)
Parse errors: Tests out of sequence. Found (2) but expected (1)
Bad plan. You planned 2 tests but ran 1.
Files=6, Tests=22, 1 wallclock secs ( 0.07 usr 0.05 sys + 0.46 cusr 0.15 csys = 0.73 CPU)
Result: FAIL
Failed 2/6 test programs. 3/22 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------- ---- -------
Test::More 0 0.95_02
version 0 0.82
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LC_MESSAGES = en_US.UTF-8
PATH = /export/home/graham/perltest/perl/bin:/usr/gnu/bin:/usr/bin:/usr/X11/bin:/usr/sbin:/sbin:/usr/ccs/bin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 5878
PERL5_CPAN_IS_RUNNING = 5878
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 688,5878
PERL_CR_SMOKER_CURRENT = BioX-SeqUtils-Promoter-0.0.8
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = xterm
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /export/home/graham/perltest/perl/bin/perl
$UID/$EUID = 101 / 101
$GID = 10 10
$EGID = 10 10
Perl module toolchain versions installed:
Module Have
------------------- -------
CPAN 1.94_58
Cwd 3.31_02
ExtUtils::CBuilder 0.2703
ExtUtils::Command 1.16
ExtUtils::Install 1.55
ExtUtils::MakeMaker 6.56
ExtUtils::Manifest 1.57
ExtUtils::ParseXS 2.2206
File::Spec 3.31_02
Module::Build 0.36_13
Module::Signature n/a
Test::Harness 3.21
Test::More 0.95_02
YAML 0.71
YAML::Syck 1.12
version 0.82
--
Summary of my perl5 (revision 5 version 12 subversion 1) configuration:
Platform:
osname=solaris, osvers=2.11, archname=i86pc-solaris
uname='sunos hidegkuti 5.11 snv_111b i86pc i386 i86pc solaris '
config_args=''
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags ='-fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DPERL_USE_SAFE_PUTENV -DPERL_USE_SAFE_PUTENV -DPERL_USE_SAFE_PUTENV -DPERL_USE_SAFE_PUTENV',
optimize='-O',
cppflags='-fno-strict-aliasing -pipe'
ccversion='', gccversion='3.4.3 (csl-sol210-3_4-20050802)', gccosandvers='solaris2.11'
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='gcc', ldflags =' '
libpth=/usr/lib /usr/ccs/lib
libs=-lsocket -lnsl -ldl -lm -lc
perllibs=-lsocket -lnsl -ldl -lm -lc
libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-fPIC', lddlflags='-G'
Characteristics of this binary (from libperl):
Compile-time options: PERL_DONT_CREATE_GVSV PERL_MALLOC_WRAP
PERL_USE_SAFE_PUTENV USE_LARGE_FILES USE_PERLIO
USE_PERL_ATOF
Built under solaris
Compiled at Jul 21 2010 15:14:27
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="5878"
PERL5_CPAN_IS_RUNNING="5878"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="688,5878"
PERL_CR_SMOKER_CURRENT="BioX-SeqUtils-Promoter-0.0.8"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/export/home/graham/perltest/perl/lib/site_perl/5.12.1/i86pc-solaris
/export/home/graham/perltest/perl/lib/site_perl/5.12.1
/export/home/graham/perltest/perl/lib/5.12.1/i86pc-solaris
/export/home/graham/perltest/perl/lib/5.12.1
.