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From: metabase:user:30f4dfbe-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-DB-USeq-0.20 v5.8.8 GNU/Linux
Date: 2013-11-21T16:09:36Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Timothy Parnell,
This is a computer-generated report for Bio-DB-USeq-0.20
on perl 5.8.8, created by CPAN-Reporter-1.2010.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
Use of uninitialized value in length at /home/njh/perl5/perlbrew/perls/perl-5.8.8/lib/site_perl/5.8.8/Module/Build/Base.pm line 2767.
Invalid type '>' in unpack at /home/njh/.cpan/build/Bio-DB-USeq-0.20-mHUuU3/t/../lib/Bio/DB/USeq.pm line 1614.
t/BioDBUseq.t ..
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 19/25 subtests
Test Summary Report
-------------------
t/BioDBUseq.t (Wstat: 65280 Tests: 6 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 25 tests but ran 6.
Files=1, Tests=6, 1 wallclock secs ( 0.01 usr 0.00 sys + 0.08 cusr 0.02 csys = 0.11 CPU)
Result: FAIL
Failed 1/1 test programs. 0/6 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------ --------- --------
Archive::Zip 1.30 1.30
Bio::Root::Version 1.0069001 1.006922
configure_requires:
Module Need Have
------------------ --------- --------
Module::Build 0.4 0.4003
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_GB.UTF-8
LANGUAGE = en_GB:en
LD_LIBRARY_PATH = /usr/local/lib::
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.8.8/bin:/home/njh/perl5/perlbrew/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/njh/bin:/sbin
PERL5LIB = /home/njh/.cpan/build/BioPerl-1.6.922-0ATDBM/blib/arch:/home/njh/.cpan/build/BioPerl-1.6.922-0ATDBM/blib/lib:/home/njh/.cpan/build/Data-Stag-0.14-gm6ESd/blib/arch:/home/njh/.cpan/build/Data-Stag-0.14-gm6ESd/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 12015
PERL5_CPAN_IS_RUNNING = 12015
PERL5_MINISMOKEBOX = 0.56
PERLBREW_BASHRC_VERSION = 0.58
PERLBREW_HOME = /home/njh/.perlbrew
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.8.8/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.8.8/bin
PERLBREW_PERL = perl-5.8.8
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_VERSION = 0.66
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = linux
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/njh/perl5/perlbrew/perls/perl-5.8.8/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 1000 112 108 46 44 30 29 25 24
$EGID = 1000 1000 112 108 46 44 30 29 25 24
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.9800
CPAN::Meta 2.132140
Cwd 3.40
ExtUtils::CBuilder 0.280205
ExtUtils::Command 1.16
ExtUtils::Install 1.54
ExtUtils::MakeMaker 6.80
ExtUtils::Manifest 1.60
ExtUtils::ParseXS 3.18
File::Spec 3.40
JSON 2.53
JSON::PP 2.27200
Module::Build 0.4003
Module::Signature 0.70
Parse::CPAN::Meta 1.4405
Test::Harness 3.26
Test::More 0.98
YAML 0.84
YAML::Syck 1.27
version 0.88
--
Summary of my perl5 (revision 5 version 8 subversion 8) configuration:
Platform:
osname=linux, osvers=3.2.0-4-amd64, archname=x86_64-linux-thread-multi
uname='linux nigelhorne.force9.co.uk 3.2.0-4-amd64 #1 smp debian 3.2.32-1 x86_64 gnulinux '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.8.8 -Duseithreads -Dusemultiplicity -Accflags=-O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -mfpmath=sse -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -Aeval:scriptdir=/home/njh/perl5/perlbrew/perls/perl-5.8.8/bin'
hint=recommended, useposix=true, d_sigaction=define
usethreads=define use5005threads=undef useithreads=define usemultiplicity=define
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -mfpmath=sse -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fno-strict-aliasing -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -mfpmath=sse -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fno-strict-aliasing -Wdeclaration-after-statement -I/usr/local/include'
ccversion='', gccversion='4.7.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc -lgdbm_compat
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.13'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_IMPLICIT_CONTEXT
PERL_MALLOC_WRAP USE_64_BIT_ALL USE_64_BIT_INT
USE_ITHREADS USE_LARGE_FILES USE_PERLIO
USE_REENTRANT_API
Built under linux
Compiled at Mar 5 2013 01:22:32
%ENV:
PERL5LIB="/home/njh/.cpan/build/BioPerl-1.6.922-0ATDBM/blib/arch:/home/njh/.cpan/build/BioPerl-1.6.922-0ATDBM/blib/lib:/home/njh/.cpan/build/Data-Stag-0.14-gm6ESd/blib/arch:/home/njh/.cpan/build/Data-Stag-0.14-gm6ESd/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="12015"
PERL5_CPAN_IS_RUNNING="12015"
PERL5_MINISMOKEBOX="0.56"
PERLBREW_BASHRC_VERSION="0.58"
PERLBREW_HOME="/home/njh/.perlbrew"
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.8.8/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.8.8/bin"
PERLBREW_PERL="perl-5.8.8"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_VERSION="0.66"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/njh/.cpan/build/BioPerl-1.6.922-0ATDBM/blib/arch
/home/njh/.cpan/build/BioPerl-1.6.922-0ATDBM/blib/lib
/home/njh/.cpan/build/Data-Stag-0.14-gm6ESd/blib/arch
/home/njh/.cpan/build/Data-Stag-0.14-gm6ESd/blib/lib
/home/njh/perl5/perlbrew/perls/perl-5.8.8/lib/5.8.8/x86_64-linux-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.8.8/lib/5.8.8
/home/njh/perl5/perlbrew/perls/perl-5.8.8/lib/site_perl/5.8.8/x86_64-linux-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.8.8/lib/site_perl/5.8.8
/home/njh/perl5/perlbrew/perls/perl-5.8.8/lib/site_perl
.