Bio-MUST-Apps-TwoScalp v0.180160 Perl 5 v5.18.4 amd64-netbsd-thread-multi

Status

Pass

From

Chris Williams (BINGOS)

Dist

Bio-MUST-Apps-TwoScalp v0.180160

Platform

Perl 5 v5.18.4 amd64-netbsd-thread-multi

Date

2018-01-20 10:47:34

ID

52d8505a-fdcf-11e7-9abe-a171f40b351c

This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--

Dear DBAURAIN,

This is a computer-generated error report created automatically by
CPANPLUS, version 0.9172. Testers personal comments may appear
at the end of this report.


Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

TEST RESULTS:

Below is the error stack from stage 'make test':

PERL_DL_NONLAZY=1 "/home/cpan/pit/thr/perl-5.18.4/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/author-critic.t ....... skipped: these tests are for testing by the author
t/author-pod-syntax.t ... skipped: these tests are for testing by the author
t/author-portability.t .. skipped: these tests are for testing by the author
t/two_scalp.t ........... skipped: skipped all two-scalp.pl tests!
Files=4, Tests=0,  5 wallclock secs ( 0.00 usr  0.12 sys +  2.71 cusr  1.53 csys =  4.36 CPU)
Result: NOTESTS


PREREQUISITES:

Here is a list of prerequisites you specified and versions we
managed to load:

	  Module Name                        Have     Want
	  Bio::MUST::Core                0.180190        0
	  Bio::MUST::Core::Ali           0.180190        0
	  Bio::MUST::Core::Constants     0.180190        0
	  Bio::MUST::Core::Seq           0.180190        0
	  Bio::MUST::Core::SeqId         0.180190        0
	  Bio::MUST::Core::SeqMask       0.180190        0
	  Bio::MUST::Core::Utils         0.180190        0
	  Bio::MUST::Drivers::Blast::Database::Temporary 0.173510        0
	  Bio::MUST::Drivers::Blast::Query 0.173510        0
	  ExtUtils::MakeMaker                7.30        0
	  Getopt::Euclid                    0.4.5        0
	  List::AllUtils                     0.14        0
	  Modern::Perl                   1.20170117        0
	  Moose                            2.2009        0
	  Path::Class                        0.37        0
	  Smart::Comments                    1.06        0
	  Test::Files                        0.14        0
	  Test::Most                         0.35        0
	  aliased                            0.34        0
	  autodie                            2.29        0
	  experimental                      0.019        0
	  feature                            1.32        0
	  namespace::autoclean               0.28        0
	  strict                             1.07        0
	  warnings                           1.18        0

Perl module toolchain versions installed:
	Module Name                        Have
	CPANPLUS                         0.9172
	CPANPLUS::Dist::Build              0.88
	Cwd                                3.62
	ExtUtils::CBuilder             0.280230
	ExtUtils::Command                  7.30
	ExtUtils::Install                  2.14
	ExtUtils::MakeMaker                7.30
	ExtUtils::Manifest                 1.70
	ExtUtils::ParseXS                  3.35
	File::Spec                         3.62
	Module::Build                    0.4224
	Pod::Parser                        1.60
	Pod::Simple                        3.28
	Test2                          1.302120
	Test::Harness                      3.39
	Test::More                     1.302120
	version                          0.9918

******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender.  As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.

If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally.  We appreciate your patience. :)
**********************************************************************

Additional comments:


This report was machine-generated by CPANPLUS::Dist::YACSmoke 1.02.
Powered by minismokebox version 0.68

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    NONINTERACTIVE_TESTING = 1
    PATH = /home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/eSp_bmsaHP/Bio-MUST-Apps-TwoScalp-0.180160/blib/script:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/sQNDvidvXh/Bio-MUST-Core-0.180190/blib/script:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/FrQtI0PnFS/Test-YAML-1.06/blib/script:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/6dwk5yYuW7/Cpanel-JSON-XS-3.0239/blib/script:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/d6MrNDGtds/Moose-2.2009/blib/script:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/3M2gBsJSIY/Package-Stash-0.37/blib/script:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/KiDn1Ycn1f/libwww-perl-6.31/blib/script:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/fjydpbJCXf/File-Find-Rule-0.34/blib/script:/home/cpan/bin:/bin:/sbin:/usr/bin:/usr/sbin:/usr/X11R7/bin:/usr/X11R6/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/bin:/usr/local/sbin
    PERL5LIB = 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.008/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/9oFEOj0kzl/Test-Without-Module-0.20/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/9oFEOj0kzl/Test-Without-Module-0.20/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/LenqChZLYY/Algorithm-Diff-1.1903/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/LenqChZLYY/Algorithm-Diff-1.1903/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/HPXgAsLb2H/Spiffy-0.46/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/HPXgAsLb2H/Spiffy-0.46/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/Seogt29rHv/Text-Diff-1.45/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/Seogt29rHv/Text-Diff-1.45/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/CuH6HLuzxl/Test-Base-0.88/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/CuH6HLuzxl/Test-Base-0.88/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/FrQtI0PnFS/Test-YAML-1.06/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/FrQtI0PnFS/Test-YAML-1.06/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/WY5n3fzIo9/YAML-1.24/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/WY5n3fzIo9/YAML-1.24/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/K2LjnmAuA1/namespace-autoclean-0.28/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/K2LjnmAuA1/namespace-autoclean-0.28/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/afQ30h48PC/MooseX-Storage-0.52/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/afQ30h48PC/MooseX-Storage-0.52/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/o40rmnwMJa/Path-Class-0.37/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/o40rmnwMJa/Path-Class-0.37/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/wr6hc3_Urj/Smart-Comments-1.06/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/wr6hc3_Urj/Smart-Comments-1.06/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/yRRUjYBvz_/Statistics-Descriptive-3.0612/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/yRRUjYBvz_/Statistics-Descriptive-3.0612/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/KoofedhdaF/Test-Files-0.14/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/KoofedhdaF/Test-Files-0.14/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/R4BEePVd1U/Class-Data-Inheritable-0.08/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/R4BEePVd1U/Class-Data-Inheritable-0.08/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/OgiDHZ4EDf/Exception-Class-1.44/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/OgiDHZ4EDf/Exception-Class-1.44/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/MfY4EzRnsa/Capture-Tiny-0.46/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/MfY4EzRnsa/Capture-Tiny-0.46/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/fhcYeormWq/Test-Differences-0.64/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/fhcYeormWq/Test-Differences-0.64/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/HX5OvOruSK/Test-Warn-0.32/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/HX5OvOruSK/Test-Warn-0.32/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/YY94uqoykb/Test-Most-0.35/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/YY94uqoykb/Test-Most-0.35/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/smoNr0d3nE/Tie-IxHash-1.23/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/smoNr0d3nE/Tie-IxHash-1.23/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/StvFyqmWnt/XML-Bare-0.53/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/StvFyqmWnt/XML-Bare-0.53/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/75kq1VvQAK/YAML-LibYAML-0.69/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/75kq1VvQAK/YAML-LibYAML-0.69/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/NKcbWMvVmW/aliased-0.34/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/NKcbWMvVmW/aliased-0.34/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/sQNDvidvXh/Bio-MUST-Core-0.180190/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/sQNDvidvXh/Bio-MUST-Core-0.180190/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/g_z7KKDzmX/Bio-FastParsers-0.173640/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/g_z7KKDzmX/Bio-FastParsers-0.173640/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/TcitjlpL_k/experimental-0.019/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/TcitjlpL_k/experimental-0.019/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/cXT7vKcoRK/Bio-MUST-Drivers-0.173510/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/cXT7vKcoRK/Bio-MUST-Drivers-0.173510/blib/arch:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/eSp_bmsaHP/Bio-MUST-Apps-TwoScalp-0.180160/blib/lib:/home/cpan/pit/thr/conf/perl-5.18.4/.cpanplus/5.18.4/build/eSp_bmsaHP/Bio-MUST-Apps-TwoScalp-0.180160/blib/arch
    PERL5_CPANPLUS_IS_RUNNING = 15721
    PERL5_CPANPLUS_IS_VERSION = 0.9172
    PERL5_MINISMOKEBOX = 0.68
    PERL5_YACSMOKE_BASE = /home/cpan/pit/thr/conf/perl-5.18.4
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_MM_USE_DEFAULT = 1
    SHELL = /usr/pkg/bin/bash
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    Perl: $^X = /home/cpan/pit/thr/perl-5.18.4/bin/perl
    UID:  $<  = 1002
    EUID: $>  = 1002
    GID:  $(  = 100 100
    EGID: $)  = 100 100


-------------------------------


--

Summary of my perl5 (revision 5 version 18 subversion 4) configuration:
   
  Platform:
    osname=netbsd, osvers=6.1.4, archname=amd64-netbsd-thread-multi
    uname='netbsd naboo.bingosnet.co.uk 6.1.4 netbsd 6.1.4 (generic) amd64 '
    config_args='-des -Dprefix=/home/cpan/pit/thr/perl-5.18.4 -Dusethreads'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=define, usemultiplicity=define
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/pkg/include',
    optimize='-O',
    cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/pkg/include'
    ccversion='', gccversion='4.5.3', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -Wl,-rpath,/usr/pkg/lib -Wl,-rpath,/usr/local/lib -fstack-protector -L/usr/pkg/lib'
    libpth=/usr/pkg/lib /lib /usr/lib
    libs=-lgdbm -lm -lcrypt -lutil -lc -lposix -lpthread
    perllibs=-lm -lcrypt -lutil -lc -lposix -lpthread
    libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E '
    cccdlflags='-DPIC -fPIC ', lddlflags='--whole-archive -shared  -L/usr/pkg/lib -fstack-protector'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
                        PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
                        PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
                        PERL_PRESERVE_IVUV PERL_SAWAMPERSAND USE_64_BIT_ALL
                        USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
                        USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
                        USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
                        USE_REENTRANT_API
  Built under netbsd
  Compiled at Nov 13 2014 13:42:15
  %ENV:
    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    PERL5_CPANPLUS_IS_RUNNING="15721"
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