App-Egaz v0.2.5 Perl 5 v5.39.4 x86_64-linux-thread-multi
- Status
- Pass
- From
- Andreas J. König (ANDK)
- Dist
-
App-Egaz v0.2.5
- Platform
- Perl 5 v5.39.4 x86_64-linux-thread-multi
- Date
- 2023-11-21 21:24:30
- ID
- 5b7fce2e-88b4-11ee-9140-cff860dbe644
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Qiang Wang,
This is a computer-generated report for App-Egaz-0.2.5
on perl 5.39.4, created by CPAN-Reporter-1.2019.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Testing App::Egaz 0.2.5
t/01-basic.t ......... ok
t/02-commands.t ...... ok
t/03-exactmatch.t .... ok
t/04-lav2axt.t ....... ok
t/05-lav2psl.t ....... ok
t/06-formats.t ....... ok
t/07-maskfasta.t ..... ok
t/08-masked.t ........ ok
t/09-partition.t ..... ok
t/10-normalize.t ..... ok
t/11-raxml.t ......... ok
t/12-plottree.t ...... ok
t/13-blastn.t ........ ok
t/14-lastz.t ......... ok
t/15-prepseq.t ....... ok
t/16-lpcnam.t ........ ok
t/17-multiz.t ........ ok
t/18-repeatmasker.t .. ok
t/19-blastmatch.t .... ok
t/20-blastlink.t ..... ok
t/21-fas2vcf.t ....... ok
t/91-template.t ...... ok
All tests successful.
Files=22, Tests=213, 12 wallclock secs ( 0.08 usr 0.04 sys + 10.25 cusr 1.47 csys = 11.84 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- -------- --------
App::Cmd 0.330 0.336
App::Fasops v0.5.16 0.6.4
App::Rangeops v0.1.0 0.1.1
App::RL v0.3.0 0.3.0
Bio::Phylo v2.0.1 v2.0.1
File::Find::Rule 0.34 0.34
File::ShareDir 1.102 1.118
IO::Zlib 0 1.14
IPC::Cmd 0 1.04
JSON 2.97001 4.10
List::MoreUtils 0.428 0.430
List::Util 0 1.63
MCE 1.835 1.889
Number::Format 1.75 1.76
Path::Tiny 0.076 0.144
perl 5.018001 5.039004
Set::Scalar 1.29 1.29
Statistics::R 0.34 0.34
String::Similarity 1.04 1.04
Template 2.26 3.101
Tie::IxHash 1.23 1.23
YAML::Syck 1.29 1.34
build_requires:
Module Need Have
------------------- -------- --------
Test::More 0.98 1.302196
configure_requires:
Module Need Have
------------------- -------- --------
Module::Build::Tiny 0.035 0.047
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LC_ADDRESS = de_DE.UTF-8
LC_IDENTIFICATION = de_DE.UTF-8
LC_MEASUREMENT = de_DE.UTF-8
LC_MONETARY = de_DE.UTF-8
LC_NAME = de_DE.UTF-8
LC_NUMERIC = de_DE.UTF-8
LC_PAPER = de_DE.UTF-8
LC_TELEPHONE = de_DE.UTF-8
LC_TIME = de_DE.UTF-8
PATH = /home/sand/bin:/usr/local/bin:/usr/local/sbin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/usr/local/perl/bin:/usr/X11/bin
PERL = /tmp/basesmoker-reloperl-O5JR/bin/perl
PERL5LIB = /tmp/loop_over_bdir-2420-UYD0J1/DBIx-Migration-Directories-0.12-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/DBIx-Migration-Directories-0.12-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/App-nrun-v1.1.2-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/App-nrun-v1.1.2-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Debian-Packages-0.03-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Debian-Packages-0.03-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Net-OpenVPN-DDNS-0.1-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Net-OpenVPN-DDNS-0.1-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Lingua-BioYaTeA-0.11-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Lingua-BioYaTeA-0.11-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Lingua-YaTeA-0.626-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Lingua-YaTeA-0.626-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Devel-Required-0.16-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Devel-Required-0.16-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 2428
PERL5_CPAN_IS_RUNNING = 2428
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /tmp/basesmoker-reloperl-O5JR/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.36
CPAN::Meta 2.150010
Cwd 3.90
ExtUtils::CBuilder 0.280240
ExtUtils::Command 7.70
ExtUtils::Install 2.22
ExtUtils::MakeMaker 7.70
ExtUtils::Manifest 1.75
ExtUtils::ParseXS 3.51
File::Spec 3.90
JSON 4.10
JSON::PP 4.16
Module::Build 0.4234
Module::Signature 0.88
Parse::CPAN::Meta 2.150010
Test2 1.302196
Test::Harness 3.48
Test::More 1.302196
YAML 1.30
YAML::Syck 1.34
version 0.9930
--
Summary of my perl5 (revision 5 version 39 subversion 4) configuration:
Commit id: 56211f03a701e3979a0d01069f8515db1c1fc2f0
Platform:
osname=linux
osvers=6.2.0-34-generic
archname=x86_64-linux-thread-multi
uname='linux k93jammy 6.2.0-34-generic #34~22.04.1-ubuntu smp preempt_dynamic thu sep 7 13:12:03 utc 2 x86_64 x86_64 x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/host/k93jammy/v5.39.4/b4f3 -Dmyhostname=k93jammy -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dlibswanted=cl pthread socket inet nsl gdbm dbm malloc dl ld sun m crypt sec util c cposix posix ucb BSD gdbm_compat -Duseithreads -Uuselongdouble -DEBUGGING=-g'
hint=recommended
useposix=true
d_sigaction=define
useithreads=define
usemultiplicity=define
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
Compiler:
cc='cc'
ccflags ='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64'
optimize='-O2 -g'
cppflags='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='11.4.0'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/x86_64-linux-gnu /usr/lib /usr/lib64
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=/lib/x86_64-linux-gnu/libc.so.6
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.35'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_LONG_DOUBLE
HAS_STRTOLD
HAS_TIMES
MULTIPLICITY
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_SIPHASH13
PERL_HASH_USE_SBOX32
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_DEVEL
PERL_USE_SAFE_PUTENV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_ITHREADS
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
USE_REENTRANT_API
USE_THREAD_SAFE_LOCALE
Built under linux
Compiled at Oct 25 2023 21:51:38
%ENV:
PERL="/tmp/basesmoker-reloperl-O5JR/bin/perl"
PERL5LIB="/tmp/loop_over_bdir-2420-UYD0J1/DBIx-Migration-Directories-0.12-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/DBIx-Migration-Directories-0.12-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/App-nrun-v1.1.2-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/App-nrun-v1.1.2-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Debian-Packages-0.03-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Debian-Packages-0.03-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Net-OpenVPN-DDNS-0.1-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Net-OpenVPN-DDNS-0.1-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Lingua-BioYaTeA-0.11-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Lingua-BioYaTeA-0.11-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Lingua-YaTeA-0.626-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Lingua-YaTeA-0.626-0/blib/lib:/tmp/loop_over_bdir-2420-UYD0J1/Devel-Required-0.16-0/blib/arch:/tmp/loop_over_bdir-2420-UYD0J1/Devel-Required-0.16-0/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="2428"
PERL5_CPAN_IS_RUNNING="2428"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/tmp/loop_over_bdir-2420-UYD0J1/DBIx-Migration-Directories-0.12-0/blib/arch
/tmp/loop_over_bdir-2420-UYD0J1/DBIx-Migration-Directories-0.12-0/blib/lib
/tmp/loop_over_bdir-2420-UYD0J1/App-nrun-v1.1.2-0/blib/arch
/tmp/loop_over_bdir-2420-UYD0J1/App-nrun-v1.1.2-0/blib/lib
/tmp/loop_over_bdir-2420-UYD0J1/Debian-Packages-0.03-0/blib/arch
/tmp/loop_over_bdir-2420-UYD0J1/Debian-Packages-0.03-0/blib/lib
/tmp/loop_over_bdir-2420-UYD0J1/Net-OpenVPN-DDNS-0.1-0/blib/arch
/tmp/loop_over_bdir-2420-UYD0J1/Net-OpenVPN-DDNS-0.1-0/blib/lib
/tmp/loop_over_bdir-2420-UYD0J1/Lingua-BioYaTeA-0.11-0/blib/arch
/tmp/loop_over_bdir-2420-UYD0J1/Lingua-BioYaTeA-0.11-0/blib/lib
/tmp/loop_over_bdir-2420-UYD0J1/Lingua-YaTeA-0.626-0/blib/arch
/tmp/loop_over_bdir-2420-UYD0J1/Lingua-YaTeA-0.626-0/blib/lib
/tmp/loop_over_bdir-2420-UYD0J1/Devel-Required-0.16-0/blib/arch
/tmp/loop_over_bdir-2420-UYD0J1/Devel-Required-0.16-0/blib/lib
/home/sand/src/perl/repoperls/installed-perls/host/k93jammy/v5.39.4/b4f3/lib/site_perl/5.39.4/x86_64-linux-thread-multi
/home/sand/src/perl/repoperls/installed-perls/host/k93jammy/v5.39.4/b4f3/lib/site_perl/5.39.4
/home/sand/src/perl/repoperls/installed-perls/host/k93jammy/v5.39.4/b4f3/lib/5.39.4/x86_64-linux-thread-multi
/home/sand/src/perl/repoperls/installed-perls/host/k93jammy/v5.39.4/b4f3/lib/5.39.4
.