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From: metabase:user:9820532a-708b-1014-9a05-b18a96298da1
Subject: FAIL BioX-SeqUtils-Promoter-0.1.1 v5.15.7 GNU/Linux
Date: 2012-01-30T01:47:31Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Charles Stephen Embry,
This is a computer-generated report for BioX-SeqUtils-Promoter-0.1.1
on perl 5.15.7, created by CPAN-Reporter-1.2003.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Testing BioX::SeqUtils::Promoter 0.1.1
t/00.load.t ....... ok
t/10.length.t ..... ok
# Failed test 'use BioX::SeqUtils::Promoter::Alignment;'
# at t/10.load.t line 10.
# Tried to use 'BioX::SeqUtils::Promoter::Alignment'.
# Error: Can't locate DBIx/MySperql.pm in @INC (@INC contains: /home/test/.cpan/build/BioX-SeqUtils-Promoter-e8OeeB/blib/lib /home/test/.cpan/build/BioX-SeqUtils-Promoter-e8OeeB/blib/arch /home/test/perl5/perlbrew/perls/perl-5.15.7-ld/lib/site_perl/5.15.7/x86_64-linux-ld /home/test/perl5/perlbrew/perls/perl-5.15.7-ld/lib/site_perl/5.15.7 /home/test/perl5/perlbrew/perls/perl-5.15.7-ld/lib/5.15.7/x86_64-linux-ld /home/test/perl5/perlbrew/perls/perl-5.15.7-ld/lib/5.15.7 .) at /home/test/.cpan/build/BioX-SeqUtils-Promoter-e8OeeB/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# BEGIN failed--compilation aborted at /home/test/.cpan/build/BioX-SeqUtils-Promoter-e8OeeB/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# Compilation failed in require at /home/test/.cpan/build/BioX-SeqUtils-Promoter-e8OeeB/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# BEGIN failed--compilation aborted at /home/test/.cpan/build/BioX-SeqUtils-Promoter-e8OeeB/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# Compilation failed in require at (eval 9) line 2.
# BEGIN failed--compilation aborted at (eval 9) line 2.
# Failed test 'use BioX::SeqUtils::Promoter::Annotations::Consensus;'
# at t/10.load.t line 34.
# Tried to use 'BioX::SeqUtils::Promoter::Annotations::Consensus'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Annotations/Consensus.pm aborted.
# Compilation failed in require at (eval 15) line 2.
# BEGIN failed--compilation aborted at (eval 15) line 2.
# Failed test 'use BioX::SeqUtils::Promoter::SaveTypes::RImage;'
# at t/10.load.t line 58.
# Tried to use 'BioX::SeqUtils::Promoter::SaveTypes::RImage'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Alignment.pm aborted.
# Compilation failed in require at /home/test/.cpan/build/BioX-SeqUtils-Promoter-e8OeeB/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# BEGIN failed--compilation aborted at /home/test/.cpan/build/BioX-SeqUtils-Promoter-e8OeeB/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# Compilation failed in require at (eval 19) line 2.
# BEGIN failed--compilation aborted at (eval 19) line 2.
# Testing BioX::SeqUtils::Promoter 0.1.1
Use of uninitialized value $BioX::SeqUtils::Promoter::Alignment::VERSION in concatenation (.) or string at t/10.load.t line 13.
# Testing BioX::SeqUtils::Promoter::Alignment
# Testing BioX::SeqUtils::Promoter::Annotations 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::CG 0.1.1
Use of uninitialized value $BioX::SeqUtils::Promoter::Annotations::Consensus::VERSION in concatenation (.) or string at t/10.load.t line 37.
# Testing BioX::SeqUtils::Promoter::Annotations::Consensus
# Testing BioX::SeqUtils::Promoter::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes::Base 0.1.1
Use of uninitialized value $BioX::SeqUtils::Promoter::SaveTypes::RImage::VERSION in concatenation (.) or string at t/10.load.t line 61.
# Testing BioX::SeqUtils::Promoter::SaveTypes::RImage
# Testing BioX::SeqUtils::Promoter::SaveTypes::Text 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequence 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequences 0.1.1
# Looks like you failed 3 tests of 13.
t/10.load.t .......
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/13 subtests
Argument "ATGCGNTTANTCG" isn't numeric in numeric eq (==) at t/10.sequence.t line 23.
Argument "ATGCGNTTANTCG" isn't numeric in numeric eq (==) at t/10.sequence.t line 23.
t/10.sequence.t ... ok
Name "main::tstring3" used only once: possible typo at t/10.sequences.t line 7.
t/10.sequences.t ..
Failed 1/2 subtests
t/11.new.t ........ ok
Test Summary Report
-------------------
t/10.load.t (Wstat: 768 Tests: 13 Failed: 3)
Failed tests: 2, 6, 10
Non-zero exit status: 3
t/10.sequences.t (Wstat: 0 Tests: 1 Failed: 0)
Parse errors: Tests out of sequence. Found (2) but expected (1)
Bad plan. You planned 2 tests but ran 1.
Files=6, Tests=22, 0 wallclock secs ( 0.05 usr 0.01 sys + 0.20 cusr 0.06 csys = 0.32 CPU)
Result: FAIL
Failed 2/6 test programs. 3/22 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------- ---- ----
Test::More 0 0.98
version 0 0.95
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = C
LC_ALL = C
MANPATH_WITHOUT_PERLBREW =
PATH = /home/test/perl5/perlbrew/bin:/home/test/perl5/perlbrew/perls/perl-5.15.7-ld/bin:/home/test/bin:~/bin:/usr/bin:/bin
PATH_WITHOUT_PERLBREW = /home/test/bin:~/bin:/usr/bin:/bin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 10996
PERL5_CPAN_IS_RUNNING = 10996
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 23323,10996
PERLBREW_BASHRC_VERSION = 0.39
PERLBREW_HOME = /home/test/.perlbrew
PERLBREW_MANPATH = /home/test/perl5/perlbrew/perls/perl-5.15.7-ld/man
PERLBREW_PATH = /home/test/perl5/perlbrew/bin:/home/test/perl5/perlbrew/perls/perl-5.15.7-ld/bin
PERLBREW_PERL = perl-5.15.7-ld
PERLBREW_ROOT = /home/test/perl5/perlbrew
PERLBREW_VERSION = 0.40
PERL_CPANM_OPT = --prompt --mirror file:///mirrors/cpan/
PERL_CR_SMOKER_CURRENT = BioX-SeqUtils-Promoter-0.1.1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = linux
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/test/perl5/perlbrew/perls/perl-5.15.7-ld/bin/perl5.15.7
$UID/$EUID = 1001 / 1001
$GID = 1001 1001
$EGID = 1001 1001
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.9800
CPAN::Meta 2.113640
Cwd 3.33
ExtUtils::CBuilder 0.280202
ExtUtils::Command 1.17
ExtUtils::Install 1.57
ExtUtils::MakeMaker 6.62
ExtUtils::Manifest 1.60
ExtUtils::ParseXS 3.13_01
File::Spec 3.33
JSON 2.27
JSON::PP 2.27008
Module::Build 0.39_01
Module::Signature n/a
Parse::CPAN::Meta 1.4401
Test::Harness 3.23
Test::More 0.98
YAML 0.78
YAML::Syck 1.19
version 0.95
--
Summary of my perl5 (revision 5 version 15 subversion 7) configuration:
Platform:
osname=linux, osvers=2.6.35-28-generic, archname=x86_64-linux-ld
uname='linux zippy 2.6.35-28-generic #50-ubuntu smp fri mar 18 18:42:20 utc 2011 x86_64 gnulinux '
config_args='-de -Dprefix=/home/test/perl5/perlbrew/perls/perl-5.15.7-ld -Duselongdouble -Dusedevel'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.4.5', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='long double', nvsize=16, Off_t='off_t', lseeksize=8
alignbytes=16, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/../lib /usr/lib/../lib /lib /usr/lib /usr/lib/x86_64-linux-gnu /lib64 /usr/lib64
libs=-lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=/lib/libc-2.12.1.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.12.1'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PERL_USE_DEVEL
USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LONG_DOUBLE USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Jan 27 2012 12:50:03
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="10996"
PERL5_CPAN_IS_RUNNING="10996"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="23323,10996"
PERLBREW_BASHRC_VERSION="0.39"
PERLBREW_HOME="/home/test/.perlbrew"
PERLBREW_MANPATH="/home/test/perl5/perlbrew/perls/perl-5.15.7-ld/man"
PERLBREW_PATH="/home/test/perl5/perlbrew/bin:/home/test/perl5/perlbrew/perls/perl-5.15.7-ld/bin"
PERLBREW_PERL="perl-5.15.7-ld"
PERLBREW_ROOT="/home/test/perl5/perlbrew"
PERLBREW_VERSION="0.40"
PERL_CPANM_OPT="--prompt --mirror file:///mirrors/cpan/"
PERL_CR_SMOKER_CURRENT="BioX-SeqUtils-Promoter-0.1.1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/test/perl5/perlbrew/perls/perl-5.15.7-ld/lib/site_perl/5.15.7/x86_64-linux-ld
/home/test/perl5/perlbrew/perls/perl-5.15.7-ld/lib/site_perl/5.15.7
/home/test/perl5/perlbrew/perls/perl-5.15.7-ld/lib/5.15.7/x86_64-linux-ld
/home/test/perl5/perlbrew/perls/perl-5.15.7-ld/lib/5.15.7
.