go-perl v0.15 Perl 5 v5.18.4 x86_64-linux-thread-multi
- Status
- Fail
- From
- Andreas J. König (ANDK)
- Dist
-
go-perl v0.15
- Platform
- Perl 5 v5.18.4 x86_64-linux-thread-multi
- Date
- 2022-05-20 16:18:24
- ID
- 7986a0a4-d858-11ec-b60e-cfda6d2f7091
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for go-perl-0.15
on perl 5.18.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/tmp/basesmoker-reloperl-LwCj/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.906856.llm.obo-1.xml > TMP.906856.llm.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_chadoxml.xsl", "TMP.906856.llm.obo-1.xml", "TMP.906856.llm.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x55f8ea1e56d8), "./t/data/llm.obo") called at t/t170chadoxml.t line 45
t/t170chadoxml.t .........
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 9/9 subtests
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.906858.llm2.obo-1.xml > TMP.906858.llm2.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_chadoxml.xsl", "TMP.906858.llm2.obo-1.xml", "TMP.906858.llm2.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x55ce1d67b6d8), "./t/data/llm2.obo") called at t/t175chadoxml_oborel.t line 45
t/t175chadoxml_oborel.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 9/9 subtests
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.906866.go-with-local-id-mapping.obo-1.xml > TMP.906866.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_chadoxml.xsl", "TMP.906866.go-with-local-id-mapping.obo-1.xml", "TMP.906866.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x557c51ed66d8), "./t/data/go-with-local-id-mapping.obo") called at t/t260oborel_in_chado.t line 44
t/t260oborel_in_chado.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 6/6 subtests
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.906868.go-with-local-id-mapping.obo-1.xml > TMP.906868.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_owl.xsl", "TMP.906868.go-with-local-id-mapping.obo-1.xml", "TMP.906868.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x563de42f06d8), "./t/data/go-with-local-id-mapping.obo") called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t170chadoxml.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t175chadoxml_oborel.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t260oborel_in_chado.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 6 tests but ran 0.
t/t270oborel_in_owl.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=112, 3 wallclock secs ( 0.08 usr 0.08 sys + 2.33 cusr 0.43 csys = 2.92 CPU)
Result: FAIL
Failed 4/24 test programs. 0/112 subtests failed.
make: *** [Makefile:1359: test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -----
Data::Dumper 0 2.145
Data::Stag 0.07 0.14
build_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 7.64
configure_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 7.64
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
PATH = /home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL = /tmp/basesmoker-reloperl-LwCj/bin/perl
PERL5LIB = /tmp/loop_over_bdir-301717-MMJeaC/Business-Shipping-DataFiles-1.02-0/blib/arch:/tmp/loop_over_bdir-301717-MMJeaC/Business-Shipping-DataFiles-1.02-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 301738
PERL5_CPAN_IS_RUNNING = 301738
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /tmp/basesmoker-reloperl-LwCj/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.29
CPAN::Meta 2.150010
Cwd 3.40
ExtUtils::CBuilder 0.280236
ExtUtils::Command 7.64
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.64
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.44
File::Spec 3.40
JSON 4.05
JSON::PP 4.07
Module::Build 0.4231
Module::Signature 0.88
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302188
YAML 1.30
YAML::Syck 1.34
version 0.9929
--
Summary of my perl5 (revision 5 version 18 subversion 4) configuration:
Derived from: 51202371ba68f3f52f13124a3ea1bc3c171e0ee2
Platform:
osname=linux, osvers=5.3.0-2-amd64, archname=x86_64-linux-thread-multi
uname='linux k93msid 5.3.0-2-amd64 #1 smp debian 5.3.9-3 (2019-11-19) x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.18.4/29fb -Dmyhostname=k93msid -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dlibswanted=cl pthread socket inet nsl gdbm dbm malloc dl ld sun m crypt sec util c cposix posix ucb BSD gdbm_compat -Duseithreads -Uuselongdouble -DEBUGGING=both'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fwrapv -DDEBUGGING -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2 -g',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fwrapv -DDEBUGGING -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='9.2.1 20191109', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.29.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.29'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: DEBUGGING HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_SAWAMPERSAND
PERL_TRACK_MEMPOOL PERL_USE_DEVEL USE_64_BIT_ALL
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
USE_REENTRANT_API
Locally applied patches:
uncommitted-changes
Built under linux
Compiled at May 15 2020 08:00:30
%ENV:
PERL="/tmp/basesmoker-reloperl-LwCj/bin/perl"
PERL5LIB="/tmp/loop_over_bdir-301717-MMJeaC/Business-Shipping-DataFiles-1.02-0/blib/arch:/tmp/loop_over_bdir-301717-MMJeaC/Business-Shipping-DataFiles-1.02-0/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="301738"
PERL5_CPAN_IS_RUNNING="301738"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/tmp/loop_over_bdir-301717-MMJeaC/Business-Shipping-DataFiles-1.02-0/blib/arch
/tmp/loop_over_bdir-301717-MMJeaC/Business-Shipping-DataFiles-1.02-0/blib/lib
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.18.4/29fb/lib/site_perl/5.18.4/x86_64-linux-thread-multi
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.18.4/29fb/lib/site_perl/5.18.4
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.18.4/29fb/lib/5.18.4/x86_64-linux-thread-multi
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.18.4/29fb/lib/5.18.4
.