Bio-DB-NCBIHelper v1.7.8 Perl 5 v5.24.0 MSWin32-x86-multi-thread-64int
- Status
- Pass
- From
- NONAME
- Dist
-
Bio-DB-NCBIHelper v1.7.8
- Platform
- Perl 5 v5.24.0 MSWin32-x86-multi-thread-64int
- Date
- 2024-01-13 12:47:41
- ID
- 7f50b51b-6c68-1014-98fb-e2c5e3396204
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for Bio-DB-NCBIHelper-1.7.8
on perl 5.24.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\Strawberry\c\bin\dmake.exe test':
C:\"Strawberry\perl\bin\perl.exe" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib\lib', 'blib\arch')" t/*.t
t/00-compile.t ......... ok
t/author-mojibake.t .... skipped: these tests are for testing by the author
t/author-pod-syntax.t .. skipped: these tests are for testing by the author
Subroutine _initialize redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 45.
Subroutine next_seq redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 60.
Subroutine _process_refseq redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 325.
Subroutine _process_links redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 424.
Subroutine _add_to_ann redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 449.
Subroutine _process_comments redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 462.
Subroutine _process_src redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 627.
Subroutine _add_references redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 692.
Subroutine _process_locus redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 714.
Subroutine _process_products_coordinates redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 775.
Subroutine _process_prop redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 836.
Subroutine _process_all_comments redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 867.
Subroutine _process_STS redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 959.
Subroutine _process_go redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 988.
Subroutine _process_grif redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 1014.
Subroutine _get_go_term redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 1070.
Subroutine _backcomp_ll redefined at C:\home\west\perl5\lib\perl5/Bio\SeqIO\entrezgene.pm line 1089.
t/EntrezGene.t ......... ok
t/GenBank.t ............ ok
t/GenPept.t ............ ok
t/Query-Genbank.t ...... ok
t/RefSeq.t ............. ok
t/Taxonomy.t ........... ok
All tests successful.
Files=9, Tests=174, 201 wallclock secs ( 0.19 usr + 0.00 sys = 0.19 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------ ------ --------
base 0 2.23
Bio::DB::Query::WebQuery v1.7.7 1.7.8
Bio::DB::Taxonomy 0 1.7.8
Bio::DB::WebDBSeqI 0 1.7.8
Bio::Root::IO 0 1.7.8
Bio::Root::Root 0 1.7.8
Bio::SeqIO 0 1.7.8
Bio::SeqIO::entrezgene 0 1.73
Bio::Taxon 0 1.7.8
Bio::WebAgent 0 1.7.8
Cache::FileCache 0 0
CGI 0 4.60
constant 0 1.33
Getopt::Long 0 2.54
HTTP::Request::Common 0 6.45
LWP::Protocol::https 0 6.11
LWP::UserAgent 0 6.72
perl 5.006 5.024000
strict 0 1.11
URI 0 5.21
URI::Escape 0 5.21
vars 0 1.03
warnings 0 1.36
XML::Twig 0 3.52
build_requires:
Module Need Have
------------------------ ------ --------
ExtUtils::MakeMaker 0 7.70
File::Spec 0 3.75
IO::Handle 0 1.55
IPC::Open3 0 1.20
Test::Exception 0 0.43
Test::More 0 1.302198
Test::Most 0 0.38
Test::RequiresInternet 0 0.05
configure_requires:
Module Need Have
------------------------ ------ --------
ExtUtils::MakeMaker 0 7.70
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
COMSPEC = C:\windows\system32\cmd.exe
NONINTERACTIVE_TESTING = 1
NUMBER_OF_PROCESSORS = 4
PATH = C:\home\west\perl5\bin;C:\windows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System32\WindowsPowerShell\v1.0\;C:\Strawberry\c\bin;C:\Strawberry\perl\site\bin;C:\Strawberry\perl\bin
PERL5LIB = C:\home\west\perl5\lib\perl5
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 5276
PERL5_CPAN_IS_RUNNING = 5276
PERL_LOCAL_LIB_ROOT = C:\home\west\perl5
PERL_MB_OPT = --install_base "C:\\home\\west\\perl5"
PERL_MM_OPT = INSTALL_BASE=C:\\home\\west\\perl5
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
PROCESSOR_IDENTIFIER = x86 Family 6 Model 37 Stepping 5, GenuineIntel
TEMP = C:\Users\user\AppData\Local\Temp
TERM = dumb
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\Strawberry\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = Win7
Win32::GetOSVersion = Service Pack 1, 6, 1, 7601, 2, 1, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 0
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.34
CPAN::Meta 2.150010
Cwd 3.75
ExtUtils::CBuilder 0.280236
ExtUtils::Command 7.70
ExtUtils::Install 2.22
ExtUtils::MakeMaker 7.70
ExtUtils::Manifest 1.75
ExtUtils::ParseXS 3.51
File::Spec 3.75
JSON 4.10
JSON::PP 4.17_01
Module::Build 0.4234
Module::Signature 0.88
Parse::CPAN::Meta 2.150010
Test::Harness 3.47
Test::More 1.302198
YAML 1.31
YAML::Syck 1.34
version 0.9930
--
Summary of my perl5 (revision 5 version 24 subversion 0) configuration:
Platform:
osname=MSWin32, osvers=6.3, archname=MSWin32-x86-multi-thread-64int
uname='Win32 strawberry-perl 5.24.0.1 #1 Tue May 10 17:10:11 2016 i386'
config_args='undef'
hint=recommended, useposix=true, d_sigaction=undef
useithreads=define, usemultiplicity=define
use64bitint=define, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags =' -s -O2 -DWIN32 -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -fwrapv -fno-strict-aliasing -mms-bitfields',
optimize='-s -O2',
cppflags='-DWIN32'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12, longdblkind=3
ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='g++', ldflags ='-s -L"C:\Strawberry\perl\lib\CORE" -L"C:\Strawberry\c\lib"'
libpth=C:\Strawberry\c\lib C:\Strawberry\c\i686-w64-mingw32\lib C:\Strawberry\c\lib\gcc\i686-w64-mingw32\4.9.2
libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=, so=dll, useshrplib=true, libperl=libperl524.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs, dlext=xs.dll, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags='-mdll -s -L"C:\Strawberry\perl\lib\CORE" -L"C:\Strawberry\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES HAVE_INTERP_INTERN MULTIPLICITY
PERLIO_LAYERS PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV USE_64_BIT_INT
USE_ITHREADS USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
USE_PERL_ATOF
Built under MSWin32
Compiled at May 10 2016 17:20:50
%ENV:
PERL5LIB="C:\home\west\perl5\lib\perl5"
PERL5_CPANPLUS_IS_RUNNING="5276"
PERL5_CPAN_IS_RUNNING="5276"
PERL_LOCAL_LIB_ROOT="C:\home\west\perl5"
PERL_MB_OPT="--install_base "C:\\home\\west\\perl5""
PERL_MM_OPT="INSTALL_BASE=C:\\home\\west\\perl5"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
C:\home\west\perl5\lib\perl5/MSWin32-x86-multi-thread-64int
C:\home\west\perl5\lib\perl5
C:/Strawberry/perl/site/lib
C:/Strawberry/perl/vendor/lib
C:/Strawberry/perl/lib
.