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From: metabase:user:320bfe00-2aae-11df-837a-5e0a49663a4f
Subject: FAIL go-perl-0.15 v5.22.0 RC2 GNU/Linux
Date: 2015-05-25T20:42:05Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for go-perl-0.15
on perl 5.22.0, created by CPAN-Reporter-1.2014.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/tmp/basesmoker-reloperl-9Dl3/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
t/t170chadoxml.t ......... ok
t/t175chadoxml_oborel.t .. ok
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
t/t260oborel_in_chado.t .. ok
compilation error: file GO/xsl/oboxml_to_owl.xsl line 818 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
compilation error: file GO/xsl/oboxml_to_owl.xsl line 863 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.1893.go-with-local-id-mapping.obo-1.xml > TMP.1893.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_owl.xsl", "TMP.1893.go-with-local-id-mapping.obo-1.xml", "TMP.1893.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x1b97168), "./t/data/go-with-local-id-mapping.obo") called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 5 (wstat 1280, 0x500)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t270oborel_in_owl.t (Wstat: 1280 Tests: 0 Failed: 0)
Non-zero exit status: 5
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=136, 5 wallclock secs ( 0.14 usr 0.13 sys + 4.38 cusr 0.59 csys = 5.24 CPU)
Result: FAIL
Failed 1/24 test programs. 0/136 subtests failed.
Makefile:1555: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -------
Data::Dumper 0 2.158
Data::Stag 0.07 0.14
build_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 7.04_01
configure_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 7.04_01
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LANGUAGE = en_US:en
PATH = /home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB = /tmp/loop_over_bdir-10788-0yJeln/Alien-ActiveMQ-0.00005-TFcjXg/blib/arch:/tmp/loop_over_bdir-10788-0yJeln/Alien-ActiveMQ-0.00005-TFcjXg/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 14807
PERL5_CPAN_IS_RUNNING = 14807
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /tmp/basesmoker-reloperl-9Dl3/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.10
CPAN::Meta 2.150001
Cwd 3.56
ExtUtils::CBuilder 0.280221
ExtUtils::Command 1.20
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.04_01
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.28
File::Spec 3.56
JSON 2.90
JSON::PP 2.27300
Module::Build 0.4212
Module::Signature 0.79
Parse::CPAN::Meta 1.4414
Test::Harness 3.35
Test::More 1.001014
YAML 1.15
YAML::Syck 1.29
version 0.9912
--
Summary of my perl5 (revision 5 version 22 subversion 0) configuration:
Commit id: 6378109479f5b474e8205c8478f484b209078772
Platform:
osname=linux, osvers=4.0.0-1-amd64, archname=x86_64-linux-thread-multi-ld
uname='linux k83 4.0.0-1-amd64 #1 smp debian 4.0.2-1 (2015-05-11) x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/perl/v5.22.0-RC2/7e7a -Dmyhostname=k83 -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Duseithreads -Duselongdouble'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
use64bitint=define, use64bitall=define, uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='long double', nvsize=16, Off_t='off_t', lseeksize=8
alignbytes=16, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/4.9/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
PERL_USE_DEVEL USE_64_BIT_ALL USE_64_BIT_INT
USE_ITHREADS USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_LONG_DOUBLE
USE_PERLIO USE_PERL_ATOF USE_REENTRANT_API
Locally applied patches:
RC2
Built under linux
Compiled at May 22 2015 07:35:55
%ENV:
PERL5LIB="/tmp/loop_over_bdir-10788-0yJeln/Alien-ActiveMQ-0.00005-TFcjXg/blib/arch:/tmp/loop_over_bdir-10788-0yJeln/Alien-ActiveMQ-0.00005-TFcjXg/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="14807"
PERL5_CPAN_IS_RUNNING="14807"
PERL_MM_USE_DEFAULT="1"
@INC:
/tmp/loop_over_bdir-10788-0yJeln/Alien-ActiveMQ-0.00005-TFcjXg/blib/arch
/tmp/loop_over_bdir-10788-0yJeln/Alien-ActiveMQ-0.00005-TFcjXg/blib/lib
/home/sand/src/perl/repoperls/installed-perls/perl/v5.22.0-RC2/7e7a/lib/site_perl/5.22.0/x86_64-linux-thread-multi-ld
/home/sand/src/perl/repoperls/installed-perls/perl/v5.22.0-RC2/7e7a/lib/site_perl/5.22.0
/home/sand/src/perl/repoperls/installed-perls/perl/v5.22.0-RC2/7e7a/lib/5.22.0/x86_64-linux-thread-multi-ld
/home/sand/src/perl/repoperls/installed-perls/perl/v5.22.0-RC2/7e7a/lib/5.22.0
.