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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL go-perl-0.15 v5.25.4 FreeBSD
Date: 2016-08-28T20:32:17Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for go-perl-0.15
on perl 5.25.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/usr/perl5.25.4p/bin/perl5.25.4" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
t/t170chadoxml.t ......... ok
t/t175chadoxml_oborel.t .. ok
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
t/t260oborel_in_chado.t .. ok
compilation error: file GO/xsl/oboxml_to_owl.xsl line 818 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
compilation error: file GO/xsl/oboxml_to_owl.xsl line 863 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.23063.go-with-local-id-mapping.obo-1.xml > TMP.23063.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_owl.xsl", "TMP.23063.go-with-local-id-mapping.obo-1.xml", "TMP.23063.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x42640ed0), "./t/data/go-with-local-id-mapping.obo") called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 5 (wstat 1280, 0x500)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t270oborel_in_owl.t (Wstat: 1280 Tests: 0 Failed: 0)
Non-zero exit status: 5
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=136, 13 wallclock secs ( 0.04 usr 0.12 sys + 2.36 cusr 0.19 csys = 2.71 CPU)
Result: FAIL
Failed 1/24 test programs. 0/136 subtests failed.
*** Error code 255
Stop.
make: stopped in /home/cpansand/.cpan/build/2016082821/go-perl-0.15-0
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -----
Data::Dumper 0 2.161
Data::Stag 0.07 0.14
build_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 7.24
configure_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 7.24
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LC_ALL = de_DE.ISO8859-1
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/freebsd10.1:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 22715
PERL5_CPAN_IS_RUNNING = 22715
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 22702,22715
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2016082821/cpanreporter_004_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
SHELL = /usr/local/bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2016082821
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/perl5.25.4p/bin/perl5.25.4
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- ----------
CPAN 2.14
CPAN::Meta 2.150010
Cwd 3.65
ExtUtils::CBuilder 0.280225
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.33
File::Spec 3.65
JSON 2.90
JSON::PP 2.27400_01
Module::Build 0.4220
Module::Signature 0.80
Parse::CPAN::Meta 2.150010
Test::Harness 3.36_01
Test::More 1.302052
YAML 1.18
YAML::Syck 1.29
version 0.9917
--
Summary of my perl5 (revision 5 version 25 subversion 4) configuration:
Platform:
osname=freebsd
osvers=10.1-release
archname=amd64-freebsd
uname='freebsd cvrsnica-freebsd-101.herceg.de 10.1-release freebsd 10.1-release #0 r274401: tue nov 11 21:02:49 utc 2014 root@releng1.nyi.freebsd.org:usrobjusrsrcsysgeneric amd64 '
config_args='-ds -e -Dprefix=/usr/perl5.25.4p -Dusedevel -Dusemallocwrap=no -Dcf_email=srezic@cpan.org -Doptimize=-O2 -pipe'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_FORTIFY_SOURCE=2'
optimize='-O2 -pipe'
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion=''
gccversion='4.2.1 Compatible FreeBSD Clang 3.4.1 (tags/RELEASE_34/dot1-final 208032)'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags ='-pthread -Wl,-E -fstack-protector -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib /usr/include/clang/3.4.1 /usr/lib
libs=-lpthread -lgdbm -lm -lcrypt -lutil -lc
perllibs=-lpthread -lm -lcrypt -lutil -lc
libc=
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags=' '
cccdlflags='-DPIC -fPIC'
lddlflags='-shared -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_DEVEL
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under freebsd
Compiled at Aug 21 2016 10:01:28
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="22715"
PERL5_CPAN_IS_RUNNING="22715"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="22702,22715"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2016082821/cpanreporter_004_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
@INC:
/usr/perl5.25.4p/lib/site_perl/5.25.4/amd64-freebsd
/usr/perl5.25.4p/lib/site_perl/5.25.4
/usr/perl5.25.4p/lib/5.25.4/amd64-freebsd
/usr/perl5.25.4p/lib/5.25.4
.