Bio-Biblio v1.70 Perl 5 v5.22.4 x86_64-linux

Status
Fail
From
Andreas J. König (ANDK)
Dist
Bio-Biblio v1.70
Platform
Perl 5 v5.22.4 x86_64-linux
Date
2017-10-04 19:45:10
ID
8836de16-a93c-11e7-bc5a-fcf295210b79
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear carandraug,

This is a computer-generated report for Bio-Biblio-1.70
on perl 5.22.4, created by CPAN-Reporter-1.2018.

Thank you for uploading your work to CPAN.  However, there was a problem
testing your distribution.

If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:

http://wiki.cpantesters.org/wiki/CPANAuthorNotes

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 "/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ............ ok
t/Biblio.t ................ ok

syntax error at line 1, column 0, byte 0 at /tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/lib/XML/Parser.pm line 187.
# Looks like your test exited with 255 just after 2.
t/biofetch.t .............. 
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/10 subtests 
t/eutils.t ................ ok
t/References.t ............ ok
t/release-eol.t ........... skipped: these tests are for release candidate testing
t/release-mojibake.t ...... skipped: these tests are for release candidate testing
t/release-no-tabs.t ....... skipped: these tests are for release candidate testing
t/release-pod-coverage.t .. skipped: these tests are for release candidate testing
t/release-pod-syntax.t .... skipped: these tests are for release candidate testing

Test Summary Report
-------------------
t/biofetch.t            (Wstat: 65280 Tests: 2 Failed: 0)
  Non-zero exit status: 255
  Parse errors: Bad plan.  You planned 10 tests but ran 2.
Files=10, Tests=601, 32 wallclock secs ( 0.09 usr  0.08 sys +  3.91 cusr  1.63 csys =  5.71 CPU)
Result: FAIL
Failed 1/10 test programs. 0/601 subtests failed.
Makefile:1036: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                  Need Have    
    ----------------------- ---- --------
    Bio::Annotation::DBLink 0    0       
    Bio::DB::DBFetch        0    0       
    Bio::Root::IO           0    1.007002
    Bio::Root::Root         0    1.007002
    Bio::Root::RootI        0    0       
    Data::Dumper            0    2.161   
    Getopt::Std             0    1.11    
    LWP::Simple             0    6.27    
    parent                  0    0.232   
    SOAP::Lite              0    1.22    
    strict                  0    1.09    
    Symbol                  0    1.07    
    URI::Escape             0    3.31    
    utf8                    0    1.17    
    vars                    0    1.03    
    warnings                0    1.34    
    XML::Parser             0    2.44    
    XML::Twig               0    3.52    

build_requires:

    Module                  Need Have    
    ----------------------- ---- --------
    File::Find              0    1.29    
    File::Spec              0    3.62    
    File::Temp              0    0.2304  
    Test::More              0    1.302097

configure_requires:

    Module                  Need Have    
    ----------------------- ---- --------
    ExtUtils::MakeMaker     6.30 7.30    


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    LANG = en_US.UTF-8
    PATH = /home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
    PERL5LIB = /tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/lib
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 13640
    PERL5_CPAN_IS_RUNNING = 13640
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 15736,13640
    PERL_CANARY_STABILITY_NOPROMPT = 1
    PERL_MM_USE_DEFAULT = 1
    PERL_USE_UNSAFE_INC = 1
    SHELL = /usr/bin/zsh
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/bin/perl
    $UID/$EUID = 1005 / 1005
    $GID = 1005 1005
    $EGID = 1005 1005

Perl module toolchain versions installed:

    Module              Have      
    ------------------- ----------
    CPAN                2.18      
    CPAN::Meta          2.150010  
    Cwd                 3.62      
    ExtUtils::CBuilder  0.280226  
    ExtUtils::Command   7.30      
    ExtUtils::Install   2.06      
    ExtUtils::MakeMaker 7.30      
    ExtUtils::Manifest  1.70      
    ExtUtils::ParseXS   3.35      
    File::Spec          3.62      
    JSON                2.94      
    JSON::PP            2.27300_01
    Module::Build       0.4224    
    Module::Signature   0.81      
    Parse::CPAN::Meta   2.150010  
    Test::Harness       3.39      
    Test::More          1.302097  
    YAML                1.23      
    YAML::Syck          1.30      
    version             0.9909    


--

Summary of my perl5 (revision 5 version 22 subversion 4) configuration:
  Derived from: a26666a1317770d8a2228ac3657ba58020c3511f
  Platform:
    osname=linux, osvers=4.12.0-2-amd64, archname=x86_64-linux
    uname='linux k93msid 4.12.0-2-amd64 #1 smp debian 4.12.13-1 (2017-09-19) x86_64 gnulinux '
    config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1 -Dmyhostname=k93msid -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dlibswanted=cl pthread socket inet nsl gdbm dbm malloc dl ld sun m crypt sec util c cposix posix ucb BSD gdbm_compat -Uuseithreads -Uuselongdouble -DDEBUGGING=both'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fwrapv -DDEBUGGING -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O2 -g',
    cppflags='-fwrapv -DDEBUGGING -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
    ccversion='', gccversion='7.2.0', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
    libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
    libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
    perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
    libc=libc-2.24.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.24'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector-strong'


Characteristics of this binary (from libperl): 
  Compile-time options: DEBUGGING HAS_TIMES PERLIO_LAYERS
                        PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
                        PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
                        PERL_USE_DEVEL USE_64_BIT_ALL USE_64_BIT_INT
                        USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
                        USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
                        USE_PERLIO USE_PERL_ATOF
  Locally applied patches:
	uncommitted-changes
  Built under linux
  Compiled at Oct  2 2017 10:47:51
  %ENV:
    PERL5LIB="/tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/lib"
    PERL5OPT=""
    PERL5_CPANPLUS_IS_RUNNING="13640"
    PERL5_CPAN_IS_RUNNING="13640"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="15736,13640"
    PERL_CANARY_STABILITY_NOPROMPT="1"
    PERL_MM_USE_DEFAULT="1"
    PERL_USE_UNSAFE_INC="1"
  @INC:
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/lib
    /tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/arch
    /tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/lib
    /home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/lib/site_perl/5.22.4/x86_64-linux
    /home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/lib/site_perl/5.22.4
    /home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/lib/5.22.4/x86_64-linux
    /home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/lib/5.22.4
    .