Bio-Biblio v1.70 Perl 5 v5.22.4 x86_64-linux
- Status
- Fail
- From
- Andreas J. König (ANDK)
- Dist
-
Bio-Biblio v1.70
- Platform
- Perl 5 v5.22.4 x86_64-linux
- Date
- 2017-10-04 19:45:10
- ID
- 8836de16-a93c-11e7-bc5a-fcf295210b79
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear carandraug,
This is a computer-generated report for Bio-Biblio-1.70
on perl 5.22.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ............ ok
t/Biblio.t ................ ok
syntax error at line 1, column 0, byte 0 at /tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/lib/XML/Parser.pm line 187.
# Looks like your test exited with 255 just after 2.
t/biofetch.t ..............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/10 subtests
t/eutils.t ................ ok
t/References.t ............ ok
t/release-eol.t ........... skipped: these tests are for release candidate testing
t/release-mojibake.t ...... skipped: these tests are for release candidate testing
t/release-no-tabs.t ....... skipped: these tests are for release candidate testing
t/release-pod-coverage.t .. skipped: these tests are for release candidate testing
t/release-pod-syntax.t .... skipped: these tests are for release candidate testing
Test Summary Report
-------------------
t/biofetch.t (Wstat: 65280 Tests: 2 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 10 tests but ran 2.
Files=10, Tests=601, 32 wallclock secs ( 0.09 usr 0.08 sys + 3.91 cusr 1.63 csys = 5.71 CPU)
Result: FAIL
Failed 1/10 test programs. 0/601 subtests failed.
Makefile:1036: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- ---- --------
Bio::Annotation::DBLink 0 0
Bio::DB::DBFetch 0 0
Bio::Root::IO 0 1.007002
Bio::Root::Root 0 1.007002
Bio::Root::RootI 0 0
Data::Dumper 0 2.161
Getopt::Std 0 1.11
LWP::Simple 0 6.27
parent 0 0.232
SOAP::Lite 0 1.22
strict 0 1.09
Symbol 0 1.07
URI::Escape 0 3.31
utf8 0 1.17
vars 0 1.03
warnings 0 1.34
XML::Parser 0 2.44
XML::Twig 0 3.52
build_requires:
Module Need Have
----------------------- ---- --------
File::Find 0 1.29
File::Spec 0 3.62
File::Temp 0 0.2304
Test::More 0 1.302097
configure_requires:
Module Need Have
----------------------- ---- --------
ExtUtils::MakeMaker 6.30 7.30
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
PATH = /home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB = /tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 13640
PERL5_CPAN_IS_RUNNING = 13640
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 15736,13640
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- ----------
CPAN 2.18
CPAN::Meta 2.150010
Cwd 3.62
ExtUtils::CBuilder 0.280226
ExtUtils::Command 7.30
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.35
File::Spec 3.62
JSON 2.94
JSON::PP 2.27300_01
Module::Build 0.4224
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.39
Test::More 1.302097
YAML 1.23
YAML::Syck 1.30
version 0.9909
--
Summary of my perl5 (revision 5 version 22 subversion 4) configuration:
Derived from: a26666a1317770d8a2228ac3657ba58020c3511f
Platform:
osname=linux, osvers=4.12.0-2-amd64, archname=x86_64-linux
uname='linux k93msid 4.12.0-2-amd64 #1 smp debian 4.12.13-1 (2017-09-19) x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1 -Dmyhostname=k93msid -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dlibswanted=cl pthread socket inet nsl gdbm dbm malloc dl ld sun m crypt sec util c cposix posix ucb BSD gdbm_compat -Uuseithreads -Uuselongdouble -DDEBUGGING=both'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -DDEBUGGING -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2 -g',
cppflags='-fwrapv -DDEBUGGING -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='7.2.0', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: DEBUGGING HAS_TIMES PERLIO_LAYERS
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
PERL_USE_DEVEL USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
USE_PERLIO USE_PERL_ATOF
Locally applied patches:
uncommitted-changes
Built under linux
Compiled at Oct 2 2017 10:47:51
%ENV:
PERL5LIB="/tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/lib:/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/arch:/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="13640"
PERL5_CPAN_IS_RUNNING="13640"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="15736,13640"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-Twig-3.52-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/SOAP-Lite-1.22-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-Lite-0.721-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/IO-SessionData-1.03-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/BioPerl-1.007002-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-Writer-0.625-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-Simple-2.24-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Expat-0.51-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-0.99-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-SAX-Base-1.09-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-NamespaceSupport-1.12-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-XPath-0.14-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-XPathEngine-0.14-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-DOM-1.46-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-RegExp-0.04-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/libxml-perl-0.08-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/XML-Parser-2.44-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/Graph-0.9704-0/blib/lib
/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/arch
/tmp/loop_over_bdir-13624-FPBPSF/Data-Stag-0.14-0/blib/lib
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/lib/site_perl/5.22.4/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/lib/site_perl/5.22.4
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/lib/5.22.4/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.4/d2d1/lib/5.22.4
.