BioPerl v1.007002 Perl 5 v5.10.1 amd64-freebsd-thread-multi
- Status
- Pass
- From
- Chris Williams (BINGOS)
- Dist
-
BioPerl v1.007002
- Platform
- Perl 5 v5.10.1 amd64-freebsd-thread-multi
- Date
- 2017-10-12 10:10:18
- ID
- 8c4f7d6a-af35-11e7-a0db-fe8001fe4d54
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9170. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
TEST RESULTS:
Below is the error stack from stage 'make test':
t/Align/AlignStats.t ................... ok
t/Align/AlignUtil.t .................... ok
t/Align/Graphics.t ..................... skipped: The optional module GD (or dependencies thereof) was not installed
t/Align/SimpleAlign.t .................. ok
t/Align/TreeBuild.t .................... ok
t/Align/Utilities.t .................... ok
t/AlignIO/AlignIO.t .................... ok
t/AlignIO/arp.t ........................ ok
t/AlignIO/bl2seq.t ..................... ok
t/AlignIO/clustalw.t ................... ok
t/AlignIO/emboss.t ..................... ok
t/AlignIO/fasta.t ...................... ok
t/AlignIO/largemultifasta.t ............ ok
t/AlignIO/maf.t ........................ ok
t/AlignIO/mase.t ....................... ok
t/AlignIO/mega.t ....................... ok
t/AlignIO/meme.t ....................... ok
t/AlignIO/metafasta.t .................. ok
t/AlignIO/msf.t ........................ ok
t/AlignIO/nexml.t ...................... skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/AlignIO/nexus.t ...................... ok
t/AlignIO/pfam.t ....................... ok
t/AlignIO/phylip.t ..................... ok
t/AlignIO/po.t ......................... ok
t/AlignIO/prodom.t ..................... ok
t/AlignIO/psi.t ........................ ok
t/AlignIO/selex.t ...................... ok
t/AlignIO/stockholm.t .................. ok
t/AlignIO/xmfa.t ....................... ok
t/Alphabet.t ........................... ok
t/Annotation/Annotation.t .............. ok
t/Annotation/AnnotationAdaptor.t ....... ok
t/Assembly/ContigSpectrum.t ............ ok
t/Assembly/IO/bowtie.t ................. skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
t/Assembly/IO/sam.t .................... skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
t/Assembly/core.t ...................... ok
t/Cluster/UniGene.t .................... ok
t/ClusterIO/ClusterIO.t ................ ok
t/ClusterIO/SequenceFamily.t ........... ok
t/ClusterIO/unigene.t .................. ok
t/Draw/Pictogram.t ..................... skipped: The optional module SVG (or dependencies thereof) was not installed
t/LiveSeq/Chain.t ...................... ok
t/LiveSeq/LiveSeq.t .................... ok
t/LiveSeq/Mutation.t ................... ok
t/LiveSeq/Mutator.t .................... ok
You are loading a Bio::DB::GFF database with GFF3 formatted data.
While this will likely work fine, the Bio::DB::GFF schema does not
always faithfully capture the complexity represented in GFF3 files.
Unless you have a specific reason for using Bio::DB::GFF, we suggest
that you use a Bio::DB::SeqFeature::Store database and its corresponding
loader, bp_seqfeature_load.pl.
t/LocalDB/BioDBGFF.t ................... ok
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at Bio/DB/IndexedBase.pm line 304.
t/LocalDB/Fasta.t ...................... ok
t/LocalDB/Flat.t ....................... ok
t/LocalDB/Index/Blast.t ................ ok
t/LocalDB/Index/BlastTable.t ........... ok
t/LocalDB/Index/Index.t ................ ok
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at Bio/DB/IndexedBase.pm line 304.
t/LocalDB/Qual.t ....................... ok
t/LocalDB/Registry.t ................... ok
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at Bio/DB/IndexedBase.pm line 304.
t/LocalDB/SeqFeature.t ................. ok
t/LocalDB/Taxonomy/greengenes.t ........ ok
t/LocalDB/Taxonomy/silva.t ............. ok
t/LocalDB/Taxonomy/sqlite.t ............ skipped: The optional module DBI (or dependencies thereof) was not installed
t/LocalDB/transfac_pro.t ............... ok
t/Map/Cyto.t ........................... ok
t/Map/Linkage.t ........................ ok
t/Map/Map.t ............................ ok
t/Map/MapIO.t .......................... ok
t/Map/MicrosatelliteMarker.t ........... ok
t/Map/Physical.t ....................... ok
t/Matrix/IO/masta.t .................... ok
t/Matrix/IO/psm.t ...................... ok
t/Matrix/InstanceSite.t ................ ok
t/Matrix/Matrix.t ...................... ok
t/Matrix/ProtMatrix.t .................. ok
t/Matrix/ProtPsm.t ..................... ok
t/Matrix/SiteMatrix.t .................. ok
t/Ontology/GOterm.t .................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/GraphAdaptor.t .............. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/IO/go.t ..................... skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/IO/interpro.t ............... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/Ontology/IO/obo.t .................... skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/Ontology.t .................. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/OntologyEngine.t ............ skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/OntologyStore.t ............. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/Relationship.t .............. skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/RelationshipType.t .......... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/Term.t ...................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Perl.t ............................... ok
t/Phenotype/Correlate.t ................ ok
t/Phenotype/MeSH.t ..................... ok
t/Phenotype/Measure.t .................. ok
t/Phenotype/MiniMIMentry.t ............. ok
t/Phenotype/OMIMentry.t ................ ok
t/Phenotype/OMIMentryAllelicVariant.t .. ok
t/Phenotype/OMIMparser.t ............... ok
t/Phenotype/Phenotype.t ................ ok
t/PodSyntax.t .......................... skipped: Test::Pod 1.00 required for testing POD
t/PopGen/Coalescent.t .................. ok
t/PopGen/HtSNP.t ....................... ok
t/PopGen/MK.t .......................... ok
t/PopGen/PopGen.t ...................... ok
t/PopGen/PopGenSims.t .................. ok
t/PopGen/TagHaplotype.t ................ ok
t/RemoteDB/BioFetch.t .................. skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/CUTG.t ...................... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/EMBL.t ...................... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/EntrezGene.t ................ skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/GenBank.t ................... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/GenPept.t ................... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/HIV/HIV.t ................... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/HIV/HIVAnnotProcessor.t ..... ok
t/RemoteDB/HIV/HIVQuery.t .............. skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/HIV/HIVQueryHelper.t ........ skipped: The optional module XML::Simple (or dependencies thereof) was not installed
t/RemoteDB/MeSH.t ...................... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/Query/GenBank.t ............. skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/RefSeq.t .................... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/SeqRead_fail.t .............. skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/SeqVersion.t ................ skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/SwissProt.t ................. skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/RemoteDB/Taxonomy.t .................. skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Restriction/Analysis-refac.t ......... ok
t/Restriction/Analysis.t ............... ok
t/Restriction/Gel.t .................... ok
t/Restriction/IO.t ..................... ok
t/Root/Exception.t ..................... ok
t/Root/HTTPget.t ....................... skipped: Network tests have not been requested
t/Root/IO.t ............................ ok
t/Root/RootI.t ......................... ok
t/Root/RootIO.t ........................ skipped: Network tests have not been requested
t/Root/Storable.t ...................... ok
t/Root/Utilities.t ..................... ok
t/SearchDist.t ......................... skipped: The optional module Bio::Ext::Align (or dependencies thereof) was not installed
t/SearchIO/CigarString.t ............... ok
t/SearchIO/SearchIO.t .................. ok
t/SearchIO/SimilarityPair.t ............ ok
t/SearchIO/Tiling.t .................... ok
t/SearchIO/Writer/GbrowseGFF.t ......... ok
t/SearchIO/Writer/HSPTableWriter.t ..... ok
t/SearchIO/Writer/HTMLWriter.t ......... ok
t/SearchIO/Writer/HitTableWriter.t ..... ok
t/SearchIO/Writer/TextWriter.t ......... ok
t/SearchIO/axt.t ....................... ok
t/SearchIO/blast.t ..................... ok
t/SearchIO/blast_pull.t ................ ok
t/SearchIO/blasttable.t ................ ok
t/SearchIO/cross_match.t ............... ok
t/SearchIO/erpin.t ..................... ok
t/SearchIO/exonerate.t ................. ok
t/SearchIO/fasta.t ..................... ok
t/SearchIO/gmap_f9.t ................... ok
t/SearchIO/hmmer.t ..................... ok
t/SearchIO/hmmer_pull.t ................ ok
t/SearchIO/infernal.t .................. ok
t/SearchIO/megablast.t ................. ok
t/SearchIO/psl.t ....................... ok
t/SearchIO/rnamotif.t .................. ok
t/SearchIO/sim4.t ...................... ok
t/SearchIO/waba.t ...................... ok
t/SearchIO/wise.t ...................... ok
t/Seq/DBLink.t ......................... ok
t/Seq/EncodedSeq.t ..................... ok
t/Seq/LargeLocatableSeq.t .............. ok
t/Seq/LargePSeq.t ...................... ok
t/Seq/LocatableSeq.t ................... ok
t/Seq/MetaSeq.t ........................ ok
t/Seq/PrimaryQual.t .................... ok
t/Seq/PrimarySeq.t ..................... ok
t/Seq/PrimedSeq.t ...................... ok
t/Seq/Quality.t ........................ ok
t/Seq/Seq.t ............................ ok
t/Seq/SimulatedRead.t .................. ok
t/Seq/WithQuality.t .................... ok
t/SeqEvolution.t ....................... ok
t/SeqFeature/Amplicon.t ................ ok
t/SeqFeature/Clone.t ................... ok
t/SeqFeature/Collection.t .............. ok
t/SeqFeature/Computation.t ............. ok
t/SeqFeature/FeaturePair.t ............. ok
t/SeqFeature/Gene.t .................... ok
t/SeqFeature/Generic.t ................. ok
t/SeqFeature/Location.t ................ ok
t/SeqFeature/LocationFactory.t ......... ok
t/SeqFeature/Primer.t .................. ok
t/SeqFeature/Range.t ................... ok
t/SeqFeature/RangeI.t .................. ok
t/SeqFeature/SeqAnalysisParser.t ....... ok
t/SeqFeature/SubSeq.t .................. ok
t/SeqFeature/Unflattener.t ............. ok
t/SeqIO/Handler.t ...................... ok
t/SeqIO/MultiFile.t .................... ok
t/SeqIO/Multiple_fasta.t ............... ok
t/SeqIO/SeqBuilder.t ................... ok
t/SeqIO/SeqIO.t ........................ ok
t/SeqIO/Splicedseq.t ................... ok
t/SeqIO/abi.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/ace.t .......................... ok
t/SeqIO/agave.t ........................ skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/alf.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/asciitree.t .................... ok
t/SeqIO/bsml.t ......................... skipped: The optional module XML::DOM (or dependencies thereof) was not installed
t/SeqIO/bsml_sax.t ..................... skipped: The optional module XML::SAX (or dependencies thereof) was not installed
t/SeqIO/chadoxml.t ..................... skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/chaos.t ........................ ok
t/SeqIO/chaosxml.t ..................... ok
t/SeqIO/ctf.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/embl.t ......................... ok
t/SeqIO/entrezgene.t ................... skipped: The optional module Bio::ASN1::EntrezGene (or dependencies thereof) was not installed
t/SeqIO/excel.t ........................ skipped: The optional module Spreadsheet::ParseExcel (or dependencies thereof) was not installed
t/SeqIO/exp.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/fasta.t ........................ ok
t/SeqIO/fastq.t ........................ ok
t/SeqIO/flybase_chadoxml.t ............. skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/game.t ......................... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/SeqIO/gbxml.t ........................ skipped: The optional module XML::SAX (or dependencies thereof) was not installed
t/SeqIO/gcg.t .......................... ok
t/SeqIO/genbank.t ...................... ok
t/SeqIO/interpro.t ..................... skipped: The optional module XML::DOM::XPath (or dependencies thereof) was not installed
t/SeqIO/kegg.t ......................... ok
t/SeqIO/largefasta.t ................... ok
t/SeqIO/lasergene.t .................... ok
t/SeqIO/locuslink.t .................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/SeqIO/mbsout.t ....................... ok
t/SeqIO/metafasta.t .................... ok
t/SeqIO/msout.t ........................ ok
t/SeqIO/nexml.t ........................ skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/SeqIO/phd.t .......................... ok
t/SeqIO/pir.t .......................... ok
t/SeqIO/pln.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/qual.t ......................... ok
t/SeqIO/raw.t .......................... ok
t/SeqIO/scf.t .......................... ok
t/SeqIO/seqxml.t ....................... skipped: The optional module XML::LibXML (or dependencies thereof) was not installed
t/SeqIO/strider.t ...................... skipped: The optional module Convert::Binary::C (or dependencies thereof) was not installed
t/SeqIO/swiss.t ........................ ok
t/SeqIO/tab.t .......................... ok
t/SeqIO/table.t ........................ skipped: The optional module IO::Scalar (or dependencies thereof) was not installed
t/SeqIO/tigr.t ......................... skipped: The optional module Error (or dependencies thereof) was not installed
t/SeqIO/tigrxml.t ...................... skipped: The optional module XML::SAX (or dependencies thereof) was not installed
t/SeqIO/tinyseq.t ...................... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/SeqIO/ztr.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqTools/Backtranslate.t ............. skipped: The optional module List::MoreUtils (or dependencies thereof) was not installed
t/SeqTools/CodonTable.t ................ ok
t/SeqTools/ECnumber.t .................. ok
t/SeqTools/GuessSeqFormat.t ............ ok
t/SeqTools/OddCodes.t .................. ok
t/SeqTools/SeqPattern.t ................ ok
t/SeqTools/SeqStats.t .................. ok
t/SeqTools/SeqUtils.t .................. ok
t/SeqTools/SeqWords.t .................. ok
t/Species.t ............................ ok
t/Structure/IO.t ....................... ok
t/Structure/Structure.t ................ ok
t/Symbol.t ............................. ok
t/TaxonTree.t .......................... skipped: These modules are now probably deprecated
t/Tools/Alignment/Consed.t ............. ok
t/Tools/AmpliconSearch.t ............... ok
t/Tools/Analysis/DNA/ESEfinder.t ....... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/Analysis/Protein/Domcut.t ...... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/Analysis/Protein/ELM.t ......... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/Analysis/Protein/GOR4.t ........ skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/Analysis/Protein/HNN.t ......... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/Analysis/Protein/NetPhos.t ..... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/Analysis/Protein/Scansite.t .... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/Analysis/Protein/Sopma.t ....... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/EMBOSS/Palindrome.t ............ ok
t/Tools/Est2Genome.t ................... ok
t/Tools/FootPrinter.t .................. ok
t/Tools/GFF.t .......................... ok
t/Tools/Geneid.t ....................... ok
t/Tools/Genewise.t ..................... ok
t/Tools/Genomewise.t ................... ok
t/Tools/Genpred.t ...................... ok
t/Tools/Hmmer.t ........................ ok
t/Tools/IUPAC.t ........................ ok
t/Tools/Lucy.t ......................... ok
t/Tools/Match.t ........................ ok
t/Tools/Phylo/Gerp.t ................... ok
t/Tools/Phylo/Molphy.t ................. ok
t/Tools/Phylo/Phylip/ProtDist.t ........ ok
t/Tools/Primer3.t ...................... ok
t/Tools/Promoterwise.t ................. ok
t/Tools/PrositeScan.t .................. ok
t/Tools/Pseudowise.t ................... ok
t/Tools/QRNA.t ......................... ok
t/Tools/RandDistFunctions.t ............ ok
t/Tools/RepeatMasker.t ................. ok
t/Tools/Run/RemoteBlast.t .............. skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/Run/RemoteBlast_rpsblast.t ..... skipped: The optional module LWP::UserAgent (or dependencies thereof) was not installed
t/Tools/Seg.t .......................... ok
t/Tools/SiRNA.t ........................ ok
t/Tools/Sigcleave.t .................... ok
t/Tools/Signalp.t ...................... ok
t/Tools/Signalp/ExtendedSignalp.t ...... ok
t/Tools/Sim4.t ......................... ok
t/Tools/Spidey/Spidey.t ................ ok
t/Tools/TandemRepeatsFinder.t .......... ok
t/Tools/TargetP.t ...................... ok
t/Tools/Tmhmm.t ........................ ok
t/Tools/ePCR.t ......................... ok
t/Tools/pICalculator.t ................. ok
t/Tools/tRNAscanSE.t ................... ok
t/Tree/Compatible.t .................... skipped: The optional module Set::Scalar (or dependencies thereof) was not installed
t/Tree/Node.t .......................... ok
t/Tree/PhyloNetwork/Factory.t .......... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/GraphViz.t ......... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/MuVector.t ......... ok
t/Tree/PhyloNetwork/PhyloNetwork.t ..... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/RandomFactory.t .... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/TreeFactory.t ...... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/RandomTreeFactory.t ............. ok
t/Tree/Tree.t .......................... ok
t/Tree/TreeIO.t ........................ ok
t/Tree/TreeIO/lintree.t ................ ok
t/Tree/TreeIO/newick.t ................. ok
t/Tree/TreeIO/nexml.t .................. skipped: The optional module 5.012 generated the following error:
t/Tree/TreeIO/nexus.t .................. ok
t/Tree/TreeIO/nhx.t .................... ok
t/Tree/TreeIO/phyloxml.t ............... skipped: The optional module XML::LibXML (or dependencies thereof) was not installed
t/Tree/TreeIO/svggraph.t ............... ok
t/Tree/TreeIO/tabtree.t ................ ok
t/Tree/TreeStatistics.t ................ ok
t/Variation/AAChange.t ................. ok
t/Variation/AAReverseMutate.t .......... ok
t/Variation/Allele.t ................... ok
t/Variation/DNAMutation.t .............. ok
t/Variation/RNAChange.t ................ ok
t/Variation/SNP.t ...................... ok
t/Variation/SeqDiff.t .................. ok
t/Variation/Variation_IO.t ............. skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/nexml.t .............................. skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
All tests successful.
Files=325, Tests=18113, 219 wallclock secs ( 3.83 usr 4.52 sys + 124.75 cusr 83.12 csys = 216.21 CPU)
Result: PASS
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
CPAN 1.9402 1.81
Data::Stag 0.14 0.11
ExtUtils::Manifest 1.70 1.52
IO::String 1.08 0
Module::Build 0.4224 0.42
Scalar::Util 1.21 0
Test::Harness 3.39 2.62
Test::Most 0.35 0
URI::Escape 3.31 0
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9170
CPANPLUS::Dist::Build 0.88
Cwd 3.62
ExtUtils::CBuilder 0.280226
ExtUtils::Command 7.30
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.35
File::Spec 3.62
Module::Build 0.4224
Pod::Parser 1.37
Pod::Simple 3.07
Test2 1.302096
Test::Harness 3.39
Test::More 1.302096
version 0.9918
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 1.02.
Powered by minismokebox version 0.68
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/o0ZMQK5af9/BioPerl-1.007002/blib/script:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/tWg5B_ZpeD/Data-Stag-0.14/blib/script:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/home/cpan/bin
PERL5LIB = :/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/8HKCHrFpgP/IO-String-1.08/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/8HKCHrFpgP/IO-String-1.08/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/tWg5B_ZpeD/Data-Stag-0.14/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/tWg5B_ZpeD/Data-Stag-0.14/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/sK6um0wINk/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/sK6um0wINk/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Y78sL1tH0N/Devel-StackTrace-2.02/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Y78sL1tH0N/Devel-StackTrace-2.02/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/2LrU1pehQU/Exception-Class-1.43/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/2LrU1pehQU/Exception-Class-1.43/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Vf8alrpKi_/Test-Deep-1.127/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Vf8alrpKi_/Test-Deep-1.127/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/GhoKM3Shk8/Capture-Tiny-0.46/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/GhoKM3Shk8/Capture-Tiny-0.46/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/6h6NZfiBfS/Data-Dumper-2.161/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/6h6NZfiBfS/Data-Dumper-2.161/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/kOZLgBtdJg/Algorithm-Diff-1.1903/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/kOZLgBtdJg/Algorithm-Diff-1.1903/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Jeqj4YQcax/Text-Diff-1.45/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Jeqj4YQcax/Text-Diff-1.45/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/lDIuki7KRx/Test-Differences-0.64/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/lDIuki7KRx/Test-Differences-0.64/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/BydK0wCMnJ/Sub-Uplevel-0.2800/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/BydK0wCMnJ/Sub-Uplevel-0.2800/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/ooVoagHkNj/Test-Exception-0.43/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/ooVoagHkNj/Test-Exception-0.43/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/_kWL1EWsK9/Carp-1.38/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/_kWL1EWsK9/Carp-1.38/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/05OsUH97sQ/Test-Warn-0.32/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/05OsUH97sQ/Test-Warn-0.32/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/9ZV4rvNJpB/Test-Most-0.35/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/9ZV4rvNJpB/Test-Most-0.35/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/dHwN7F1YNa/Test-Needs-0.002005/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/dHwN7F1YNa/Test-Needs-0.002005/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/3TGqfHu8MF/URI-1.72/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/3TGqfHu8MF/URI-1.72/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/o0ZMQK5af9/BioPerl-1.007002/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/o0ZMQK5af9/BioPerl-1.007002/blib/arch
PERL5_CPANPLUS_IS_RUNNING = 6673
PERL5_CPANPLUS_IS_VERSION = 0.9170
PERL5_MINISMOKEBOX = 0.68
PERL5_YACSMOKE_BASE = /usr/home/cpan/pit/thr/conf/perl-5.10.1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/local/bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /usr/home/cpan/pit/thr/perl-5.10.1/bin/perl
UID: $< = 1002
EUID: $> = 1002
GID: $( = 1002 1002
EGID: $) = 1002 1002
-------------------------------
--
Summary of my perl5 (revision 5 version 10 subversion 1) configuration:
Platform:
osname=freebsd, osvers=11.1-release, archname=amd64-freebsd-thread-multi
uname='freebsd fforc 11.1-release freebsd 11.1-release #0 r321309: fri jul 21 02:08:28 utc 2017 root@releng2.nyi.freebsd.org:usrobjusrsrcsysgeneric amd64 '
config_args='-des -Dprefix=/usr/home/cpan/pit/thr/perl-5.10.1 -Dusethreads'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include',
optimize='-O',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.2.1 Compatible FreeBSD Clang 4.0.0 (tags/RELEASE_400/final 297347)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-pthread -Wl,-E -fstack-protector -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib
libs=-lgdbm -lm -lcrypt -lutil
perllibs=-lm -lcrypt -lutil
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP USE_64_BIT_ALL
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_PERLIO USE_REENTRANT_API
Locally applied patches:
Devel::PatchPerl 1.48
Built under freebsd
Compiled at Jul 27 2017 04:08:20
%ENV:
PERL5LIB=":/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/8HKCHrFpgP/IO-String-1.08/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/8HKCHrFpgP/IO-String-1.08/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/tWg5B_ZpeD/Data-Stag-0.14/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/tWg5B_ZpeD/Data-Stag-0.14/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/sK6um0wINk/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/sK6um0wINk/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Y78sL1tH0N/Devel-StackTrace-2.02/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Y78sL1tH0N/Devel-StackTrace-2.02/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/2LrU1pehQU/Exception-Class-1.43/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/2LrU1pehQU/Exception-Class-1.43/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Vf8alrpKi_/Test-Deep-1.127/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Vf8alrpKi_/Test-Deep-1.127/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/GhoKM3Shk8/Capture-Tiny-0.46/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/GhoKM3Shk8/Capture-Tiny-0.46/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/6h6NZfiBfS/Data-Dumper-2.161/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/6h6NZfiBfS/Data-Dumper-2.161/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/kOZLgBtdJg/Algorithm-Diff-1.1903/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/kOZLgBtdJg/Algorithm-Diff-1.1903/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Jeqj4YQcax/Text-Diff-1.45/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Jeqj4YQcax/Text-Diff-1.45/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/lDIuki7KRx/Test-Differences-0.64/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/lDIuki7KRx/Test-Differences-0.64/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/BydK0wCMnJ/Sub-Uplevel-0.2800/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/BydK0wCMnJ/Sub-Uplevel-0.2800/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/ooVoagHkNj/Test-Exception-0.43/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/ooVoagHkNj/Test-Exception-0.43/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/_kWL1EWsK9/Carp-1.38/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/_kWL1EWsK9/Carp-1.38/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/05OsUH97sQ/Test-Warn-0.32/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/05OsUH97sQ/Test-Warn-0.32/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/9ZV4rvNJpB/Test-Most-0.35/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/9ZV4rvNJpB/Test-Most-0.35/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/dHwN7F1YNa/Test-Needs-0.002005/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/dHwN7F1YNa/Test-Needs-0.002005/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/3TGqfHu8MF/URI-1.72/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/3TGqfHu8MF/URI-1.72/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/o0ZMQK5af9/BioPerl-1.007002/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/o0ZMQK5af9/BioPerl-1.007002/blib/arch"
PERL5_CPANPLUS_IS_RUNNING="6673"
PERL5_CPANPLUS_IS_VERSION="0.9170"
PERL5_MINISMOKEBOX="0.68"
PERL5_YACSMOKE_BASE="/usr/home/cpan/pit/thr/conf/perl-5.10.1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/8HKCHrFpgP/IO-String-1.08/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/8HKCHrFpgP/IO-String-1.08/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/tWg5B_ZpeD/Data-Stag-0.14/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/tWg5B_ZpeD/Data-Stag-0.14/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/sK6um0wINk/Class-Data-Inheritable-0.08/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/sK6um0wINk/Class-Data-Inheritable-0.08/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Y78sL1tH0N/Devel-StackTrace-2.02/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Y78sL1tH0N/Devel-StackTrace-2.02/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/2LrU1pehQU/Exception-Class-1.43/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/2LrU1pehQU/Exception-Class-1.43/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Vf8alrpKi_/Test-Deep-1.127/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Vf8alrpKi_/Test-Deep-1.127/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/GhoKM3Shk8/Capture-Tiny-0.46/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/GhoKM3Shk8/Capture-Tiny-0.46/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/6h6NZfiBfS/Data-Dumper-2.161/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/6h6NZfiBfS/Data-Dumper-2.161/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/kOZLgBtdJg/Algorithm-Diff-1.1903/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/kOZLgBtdJg/Algorithm-Diff-1.1903/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Jeqj4YQcax/Text-Diff-1.45/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/Jeqj4YQcax/Text-Diff-1.45/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/lDIuki7KRx/Test-Differences-0.64/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/lDIuki7KRx/Test-Differences-0.64/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/BydK0wCMnJ/Sub-Uplevel-0.2800/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/BydK0wCMnJ/Sub-Uplevel-0.2800/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/ooVoagHkNj/Test-Exception-0.43/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/ooVoagHkNj/Test-Exception-0.43/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/_kWL1EWsK9/Carp-1.38/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/_kWL1EWsK9/Carp-1.38/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/05OsUH97sQ/Test-Warn-0.32/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/05OsUH97sQ/Test-Warn-0.32/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/9ZV4rvNJpB/Test-Most-0.35/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/9ZV4rvNJpB/Test-Most-0.35/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/dHwN7F1YNa/Test-Needs-0.002005/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/dHwN7F1YNa/Test-Needs-0.002005/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/3TGqfHu8MF/URI-1.72/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/3TGqfHu8MF/URI-1.72/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/o0ZMQK5af9/BioPerl-1.007002/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.10.1/.cpanplus/5.10.1/build/o0ZMQK5af9/BioPerl-1.007002/blib/arch
/usr/home/cpan/pit/thr/perl-5.10.1/lib/5.10.1/amd64-freebsd-thread-multi
/usr/home/cpan/pit/thr/perl-5.10.1/lib/5.10.1
/usr/home/cpan/pit/thr/perl-5.10.1/lib/site_perl/5.10.1/amd64-freebsd-thread-multi
/usr/home/cpan/pit/thr/perl-5.10.1/lib/site_perl/5.10.1
.