BioX-SeqUtils-Promoter v0.1.1 Perl 5 v5.26.3 x86_64-linux
- Status
- Fail
- From
- Oleg Pronin (SYBER)
- Dist
-
BioX-SeqUtils-Promoter v0.1.1
- Platform
- Perl 5 v5.26.3 x86_64-linux
- Date
- 2019-08-13 13:30:43
- ID
- 8ce2e4c0-bdce-11e9-b35a-36702958ff60
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Charles Stephen Embry,
This is a computer-generated report for BioX-SeqUtils-Promoter-0.1.1
on perl 5.26.3, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Testing BioX::SeqUtils::Promoter 0.1.1
t/00.load.t ....... ok
t/10.length.t ..... ok
# Failed test 'use BioX::SeqUtils::Promoter::Alignment;'
# at t/10.load.t line 10.
# Tried to use 'BioX::SeqUtils::Promoter::Alignment'.
# Error: Can't locate DBIx/MySperql.pm in @INC (you may need to install the DBIx::MySperql module) (@INC contains: /home/syber/.local/share/.cpan/build/BioX-SeqUtils-Promoter-1/blib/lib /home/syber/.local/share/.cpan/build/BioX-SeqUtils-Promoter-1/blib/arch /home/syber/perl5/perlbrew/perls/5.26.3/lib/site_perl/5.26.3/x86_64-linux /home/syber/perl5/perlbrew/perls/5.26.3/lib/site_perl/5.26.3 /home/syber/perl5/perlbrew/perls/5.26.3/lib/5.26.3/x86_64-linux /home/syber/perl5/perlbrew/perls/5.26.3/lib/5.26.3 .) at /home/syber/.local/share/.cpan/build/BioX-SeqUtils-Promoter-1/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# BEGIN failed--compilation aborted at /home/syber/.local/share/.cpan/build/BioX-SeqUtils-Promoter-1/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# Compilation failed in require at /home/syber/.local/share/.cpan/build/BioX-SeqUtils-Promoter-1/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# BEGIN failed--compilation aborted at /home/syber/.local/share/.cpan/build/BioX-SeqUtils-Promoter-1/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# Compilation failed in require at t/10.load.t line 10.
# BEGIN failed--compilation aborted at t/10.load.t line 10.
# Failed test 'use BioX::SeqUtils::Promoter::Annotations::Consensus;'
# at t/10.load.t line 34.
# Tried to use 'BioX::SeqUtils::Promoter::Annotations::Consensus'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Annotations/Consensus.pm aborted.
# Compilation failed in require at t/10.load.t line 34.
# BEGIN failed--compilation aborted at t/10.load.t line 34.
# Failed test 'use BioX::SeqUtils::Promoter::SaveTypes::RImage;'
# at t/10.load.t line 58.
# Tried to use 'BioX::SeqUtils::Promoter::SaveTypes::RImage'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Alignment.pm aborted.
# Compilation failed in require at /home/syber/.local/share/.cpan/build/BioX-SeqUtils-Promoter-1/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# BEGIN failed--compilation aborted at /home/syber/.local/share/.cpan/build/BioX-SeqUtils-Promoter-1/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# Compilation failed in require at t/10.load.t line 58.
# BEGIN failed--compilation aborted at t/10.load.t line 58.
# Testing BioX::SeqUtils::Promoter 0.1.1
# Testing BioX::SeqUtils::Promoter::Alignment
# Testing BioX::SeqUtils::Promoter::Annotations 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::CG 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Consensus
# Testing BioX::SeqUtils::Promoter::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes::RImage
# Testing BioX::SeqUtils::Promoter::SaveTypes::Text 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequence 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequences 0.1.1
# Looks like you failed 3 tests of 13.
t/10.load.t .......
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/13 subtests
t/10.sequence.t ... ok
t/10.sequences.t ..
Failed 1/2 subtests
t/11.new.t ........ ok
Test Summary Report
-------------------
t/10.load.t (Wstat: 768 Tests: 13 Failed: 3)
Failed tests: 2, 6, 10
Non-zero exit status: 3
t/10.sequences.t (Wstat: 0 Tests: 1 Failed: 0)
Parse errors: Tests out of sequence. Found (2) but expected (1)
Bad plan. You planned 2 tests but ran 1.
Files=6, Tests=22, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.39 cusr 0.06 csys = 0.47 CPU)
Result: FAIL
Failed 2/6 test programs. 3/22 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------- ---- ---------
Test::More 0 1.302164
version 0 0.9924_02
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LC_COLLATE = ru_RU.utf8
LC_CTYPE = ru_RU.utf8
PATH = /home/syber/perl5/perlbrew/bin:/home/syber/perl5/perlbrew/perls/5.26.3/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 5605
PERL5_CPAN_IS_RUNNING = 5605
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 32142,5605
PERLBREW_HOME = /home/syber/.perlbrew
PERLBREW_MANPATH = /home/syber/perl5/perlbrew/perls/5.26.3/man
PERLBREW_PATH = /home/syber/perl5/perlbrew/bin:/home/syber/perl5/perlbrew/perls/5.26.3/bin
PERLBREW_PERL = 5.26.3
PERLBREW_ROOT = /home/syber/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.86
PERLBREW_VERSION = 0.86
PERL_CR_SMOKER_CURRENT = BioX-SeqUtils-Promoter-0.1.1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/syber/perl5/perlbrew/perls/5.26.3/bin/perl
$UID/$EUID = 1003 / 1003
$GID = 1003 11 1003
$EGID = 1003 11 1003
Perl module toolchain versions installed:
Module Have
------------------- ---------
CPAN 2.27
CPAN::Meta 2.150010
Cwd 3.75
ExtUtils::CBuilder 0.280231
ExtUtils::Command 7.37_03
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.37_03
ExtUtils::Manifest 1.72
ExtUtils::ParseXS 3.36_03
File::Spec 3.75
JSON 4.02
JSON::PP 4.04
Module::Build 0.42_30
Module::Signature 0.83
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302164
YAML 1.29
YAML::Syck 1.31
version 0.9924_02
--
Summary of my perl5 (revision 5 version 26 subversion 3) configuration:
Platform:
osname=linux
osvers=4.9.0-8-amd64
archname=x86_64-linux
uname='linux dexter.crazypanda.ru 4.9.0-8-amd64 #1 smp debian 4.9.110-3+deb9u6 (2018-10-08) x86_64 gnulinux '
config_args='-de -Dprefix=/home/syber/perl5/perlbrew/perls/5.26.3 -Aeval:scriptdir=/home/syber/perl5/perlbrew/perls/5.26.3/bin'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2'
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='6.3.0 20170516'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Locally applied patches:
Devel::PatchPerl 1.64
Built under linux
Compiled at Aug 5 2019 13:39:23
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="5605"
PERL5_CPAN_IS_RUNNING="5605"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="32142,5605"
PERLBREW_HOME="/home/syber/.perlbrew"
PERLBREW_MANPATH="/home/syber/perl5/perlbrew/perls/5.26.3/man"
PERLBREW_PATH="/home/syber/perl5/perlbrew/bin:/home/syber/perl5/perlbrew/perls/5.26.3/bin"
PERLBREW_PERL="5.26.3"
PERLBREW_ROOT="/home/syber/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.86"
PERLBREW_VERSION="0.86"
PERL_CR_SMOKER_CURRENT="BioX-SeqUtils-Promoter-0.1.1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/syber/perl5/perlbrew/perls/5.26.3/lib/site_perl/5.26.3/x86_64-linux
/home/syber/perl5/perlbrew/perls/5.26.3/lib/site_perl/5.26.3
/home/syber/perl5/perlbrew/perls/5.26.3/lib/5.26.3/x86_64-linux
/home/syber/perl5/perlbrew/perls/5.26.3/lib/5.26.3
.