Report for CaCORE-3.2.1_r1

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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: PASS CaCORE-3.2.1_r1 v5.22.1 RC2 GNU/Linux
Date: 2015-11-21T16:11:45Z

This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear National Cancer Institute Center for Bioinformatics,

This is a computer-generated report for CaCORE-3.2.1_r1
on perl 5.22.1, created by CPAN-Reporter-1.2015.

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 "/bbbike/perl-5.22.1-RC2/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/CaCORE.t .. ok
All tests successful.
Files=1, Tests=11,  0 wallclock secs ( 0.01 usr  0.02 sys +  0.21 cusr  0.08 csys =  0.32 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module              Need Have
    ------------------- ---- ----
    XML::DOM            1.25 1.45

build_requires:

    Module              Need Have
    ------------------- ---- ----
    ExtUtils::MakeMaker 0    7.10


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    LANG = C
    PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/eserte/bin/linux-gnu:/home/eserte/bin/sh:/home/eserte/bin:/usr/games:/home/eserte/devel:/home/eserte/src/srezic-misc/scripts
    PERL5LIB = /home/eserte/.cpan/build/2015112115/XML-DOM-1.45-OGgCcc/blib/arch:/home/eserte/.cpan/build/2015112115/XML-DOM-1.45-OGgCcc/blib/lib:/home/eserte/.cpan/build/2015112115/libxml-perl-0.08-N9Sv44/blib/arch:/home/eserte/.cpan/build/2015112115/libxml-perl-0.08-N9Sv44/blib/lib:/home/eserte/.cpan/build/2015112115/XML-RegExp-0.04-2cI102/blib/arch:/home/eserte/.cpan/build/2015112115/XML-RegExp-0.04-2cI102/blib/lib:/home/eserte/.cpan/build/2015112115/HTML-TagParser-0.20-P9aVTB/blib/arch:/home/eserte/.cpan/build/2015112115/HTML-TagParser-0.20-P9aVTB/blib/lib:/home/eserte/.cpan/build/2015112115/Voting-Condorcet-RankedPairs-1.01-0z4EmR/blib/arch:/home/eserte/.cpan/build/2015112115/Voting-Condorcet-RankedPairs-1.01-0z4EmR/blib/lib:/home/eserte/.cpan/build/2015112115/Tie-FileSystem-2.15-SGtBiX/blib/arch:/home/eserte/.cpan/build/2015112115/Tie-FileSystem-2.15-SGtBiX/blib/lib:/home/eserte/.cpan/build/2015112115/Quantum-Superpositions-2.02-i_zrJp/blib/arch:/home/eserte/.cpan/build/2015112115/Quantum-Superpositions-2.02-i_zrJp/blib/lib:/home/eserte/.cpan/build/2015112115/Class-Multimethods-1.70-Ou0fYm/blib/arch:/home/eserte/.cpan/build/2015112115/Class-Multimethods-1.70-Ou0fYm/blib/lib:/home/eserte/.cpan/build/2015112115/Chart-Strip-1.08-rG6zKQ/blib/arch:/home/eserte/.cpan/build/2015112115/Chart-Strip-1.08-rG6zKQ/blib/lib:/home/eserte/.cpan/build/2015112115/POE-Component-OSCAR-0.05-vuscsa/blib/arch:/home/eserte/.cpan/build/2015112115/POE-Component-OSCAR-0.05-vuscsa/blib/lib:/home/eserte/.cpan/build/2015112115/Net-OSCAR-1.928-VS5Ytf/blib/arch:/home/eserte/.cpan/build/2015112115/Net-OSCAR-1.928-VS5Ytf/blib/lib:/home/eserte/.cpan/build/2015112115/SOCKS-0.03-GCW4eP/blib/arch:/home/eserte/.cpan/build/2015112115/SOCKS-0.03-GCW4eP/blib/lib:/home/eserte/.cpan/build/2015112115/Filter-Template-1.043-f6CGOZ/blib/arch:/home/eserte/.cpan/build/2015112115/Filter-Template-1.043-f6CGOZ/blib/lib:/home/eserte/.cpan/build/2015112115/Lingua-NL-Numbers-GroeneBoekje-0.10-rQ8ml0/blib/arch:/home/eserte/.cpan/build/2015112115/Lingua-NL-Numbers-GroeneBoekje-0.10-rQ8ml0/blib/lib:/home/eserte/.cpan/build/2015112115/Kwiki-IRCMode-0.302-AyHy7g/blib/arch:/home/eserte/.cpan/build/2015112115/Kwiki-IRCMode-0.302-AyHy7g/blib/lib:/home/eserte/.cpan/build/2015112115/Parse-IRCLog-1.106-Cukoun/blib/arch:/home/eserte/.cpan/build/2015112115/Parse-IRCLog-1.106-Cukoun/blib/lib:/home/eserte/.cpan/build/2015112115/Kwiki-0.39-FGuWSD/blib/arch:/home/eserte/.cpan/build/2015112115/Kwiki-0.39-FGuWSD/blib/lib:/home/eserte/.cpan/build/2015112115/Spoon-0.24-f89r5u/blib/arch:/home/eserte/.cpan/build/2015112115/Spoon-0.24-f89r5u/blib/lib:/home/eserte/.cpan/build/2015112115/File-FilterFuncs-0.53-Y7aZQS/blib/arch:/home/eserte/.cpan/build/2015112115/File-FilterFuncs-0.53-Y7aZQS/blib/lib:/home/eserte/.cpan/build/2015112115/Algorithm-Merge-0.08-Gfuo2B/blib/arch:/home/eserte/.cpan/build/2015112115/Algorithm-Merge-0.08-Gfuo2B/blib/lib:/home/eserte/.cpan/build/2015112115/Youri-Utils-v0.2.1-HBI4wo/blib/arch:/home/eserte/.cpan/build/2015112115/Youri-Utils-v0.2.1-HBI4wo/blib/lib:/home/eserte/.cpan/build/2015112115/XML-Liberal-0.30-9KUUjQ/blib/arch:/home/eserte/.cpan/build/2015112115/XML-Liberal-0.30-9KUUjQ/blib/lib:/home/eserte/.cpan/build/2015112115/Module-Pluggable-Fast-0.19-pr6zMv/blib/arch:/home/eserte/.cpan/build/2015112115/Module-Pluggable-Fast-0.19-pr6zMv/blib/lib:/home/eserte/.cpan/build/2015112115/Class-Field-0.23-WBumO_/blib/arch:/home/eserte/.cpan/build/2015112115/Class-Field-0.23-WBumO_/blib/lib:/home/eserte/.cpan/build/2015112115/App-Options-1.12-zrK76Q/blib/arch:/home/eserte/.cpan/build/2015112115/App-Options-1.12-zrK76Q/blib/lib:/home/eserte/.cpan/build/2015112115/Test-Mock-LWP-0.08-A8dHJ4/blib/arch:/home/eserte/.cpan/build/2015112115/Test-Mock-LWP-0.08-A8dHJ4/blib/lib:/home/eserte/.cpan/build/2015112115/bin-sqlpp-0.06-HzcqJ4/blib/arch:/home/eserte/.cpan/build/2015112115/bin-sqlpp-0.06-HzcqJ4/blib/lib:/home/eserte/.cpan/build/2015112115/PerlIO-via-Logger-1.01-2JfvSn/blib/arch:/home/eserte/.cpan/build/2015112115/PerlIO-via-Logger-1.01-2JfvSn/blib/lib:/home/eserte/.cpan/build/2015112115/Contextual-Call-0.01-GxPxLK/blib/arch:/home/eserte/.cpan/build/2015112115/Contextual-Call-0.01-GxPxLK/blib/lib
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 31082
    PERL5_CPAN_IS_RUNNING = 31082
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 27764,31082
    PERLDOC = -MPod::Perldoc::ToTextOverstrike
    PERL_BATCH = yes
    PERL_CANARY_STABILITY_NOPROMPT = 1
    PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1001/2015112109/cpanreporter_000_config.ini
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    SHELL = /bin/zsh
    TERM = screen
    TMPDIR = /var/tmp/cpansmoker-1001/2015112109

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /bbbike/perl-5.22.1-RC2/bin/perl
    $UID/$EUID = 1001 / 1001
    $GID = 1001 109 1001
    $EGID = 1001 109 1001

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.11    
    CPAN::Meta          2.150005
    Cwd                 3.59    
    ExtUtils::CBuilder  0.280224
    ExtUtils::Command   7.10    
    ExtUtils::Install   2.04    
    ExtUtils::MakeMaker 7.10    
    ExtUtils::Manifest  1.70    
    ExtUtils::ParseXS   3.30    
    File::Spec          3.59    
    JSON                2.90    
    JSON::PP            2.27300 
    Module::Build       0.4214  
    Module::Signature   n/a     
    Parse::CPAN::Meta   1.4414  
    Test::Harness       3.35    
    Test::More          1.001014
    YAML                1.15    
    YAML::Syck          1.29    
    version             0.9912  


--

Summary of my perl5 (revision 5 version 22 subversion 1) configuration:
   
  Platform:
    osname=linux, osvers=3.2.0-4-amd64, archname=x86_64-linux
    uname='linux eserte 3.2.0-4-amd64 #1 smp debian 3.2.68-1+deb7u6 x86_64 gnulinux '
    config_args='-ds -e -Dprefix=/opt/perl-5.22.1-RC2 -Dcf_email=srezic@cpan.org'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
    optimize='-O2',
    cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
    ccversion='', gccversion='4.7.2', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
    libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
    libs=-lpthread -lnsl -ldb -ldl -lm -lcrypt -lutil -lc
    perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
    libc=libc-2.13.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.13'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
                        PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
                        USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
                        USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
                        USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
                        USE_PERL_ATOF
  Locally applied patches:
	RC2
  Built under linux
  Compiled at Nov 15 2015 17:36:07
  %ENV:
    PERL5LIB="/home/eserte/.cpan/build/2015112115/XML-DOM-1.45-OGgCcc/blib/arch:/home/eserte/.cpan/build/2015112115/XML-DOM-1.45-OGgCcc/blib/lib:/home/eserte/.cpan/build/2015112115/libxml-perl-0.08-N9Sv44/blib/arch:/home/eserte/.cpan/build/2015112115/libxml-perl-0.08-N9Sv44/blib/lib:/home/eserte/.cpan/build/2015112115/XML-RegExp-0.04-2cI102/blib/arch:/home/eserte/.cpan/build/2015112115/XML-RegExp-0.04-2cI102/blib/lib:/home/eserte/.cpan/build/2015112115/HTML-TagParser-0.20-P9aVTB/blib/arch:/home/eserte/.cpan/build/2015112115/HTML-TagParser-0.20-P9aVTB/blib/lib:/home/eserte/.cpan/build/2015112115/Voting-Condorcet-RankedPairs-1.01-0z4EmR/blib/arch:/home/eserte/.cpan/build/2015112115/Voting-Condorcet-RankedPairs-1.01-0z4EmR/blib/lib:/home/eserte/.cpan/build/2015112115/Tie-FileSystem-2.15-SGtBiX/blib/arch:/home/eserte/.cpan/build/2015112115/Tie-FileSystem-2.15-SGtBiX/blib/lib:/home/eserte/.cpan/build/2015112115/Quantum-Superpositions-2.02-i_zrJp/blib/arch:/home/eserte/.cpan/build/2015112115/Quantum-Superpositions-2.02-i_zrJp/blib/lib:/home/eserte/.cpan/build/2015112115/Class-Multimethods-1.70-Ou0fYm/blib/arch:/home/eserte/.cpan/build/2015112115/Class-Multimethods-1.70-Ou0fYm/blib/lib:/home/eserte/.cpan/build/2015112115/Chart-Strip-1.08-rG6zKQ/blib/arch:/home/eserte/.cpan/build/2015112115/Chart-Strip-1.08-rG6zKQ/blib/lib:/home/eserte/.cpan/build/2015112115/POE-Component-OSCAR-0.05-vuscsa/blib/arch:/home/eserte/.cpan/build/2015112115/POE-Component-OSCAR-0.05-vuscsa/blib/lib:/home/eserte/.cpan/build/2015112115/Net-OSCAR-1.928-VS5Ytf/blib/arch:/home/eserte/.cpan/build/2015112115/Net-OSCAR-1.928-VS5Ytf/blib/lib:/home/eserte/.cpan/build/2015112115/SOCKS-0.03-GCW4eP/blib/arch:/home/eserte/.cpan/build/2015112115/SOCKS-0.03-GCW4eP/blib/lib:/home/eserte/.cpan/build/2015112115/Filter-Template-1.043-f6CGOZ/blib/arch:/home/eserte/.cpan/build/2015112115/Filter-Template-1.043-f6CGOZ/blib/lib:/home/eserte/.cpan/build/2015112115/Lingua-NL-Numbers-GroeneBoekje-0.10-rQ8ml0/blib/arch:/home/eserte/.cpan/build/2015112115/Lingua-NL-Numbers-GroeneBoekje-0.10-rQ8ml0/blib/lib:/home/eserte/.cpan/build/2015112115/Kwiki-IRCMode-0.302-AyHy7g/blib/arch:/home/eserte/.cpan/build/2015112115/Kwiki-IRCMode-0.302-AyHy7g/blib/lib:/home/eserte/.cpan/build/2015112115/Parse-IRCLog-1.106-Cukoun/blib/arch:/home/eserte/.cpan/build/2015112115/Parse-IRCLog-1.106-Cukoun/blib/lib:/home/eserte/.cpan/build/2015112115/Kwiki-0.39-FGuWSD/blib/arch:/home/eserte/.cpan/build/2015112115/Kwiki-0.39-FGuWSD/blib/lib:/home/eserte/.cpan/build/2015112115/Spoon-0.24-f89r5u/blib/arch:/home/eserte/.cpan/build/2015112115/Spoon-0.24-f89r5u/blib/lib:/home/eserte/.cpan/build/2015112115/File-FilterFuncs-0.53-Y7aZQS/blib/arch:/home/eserte/.cpan/build/2015112115/File-FilterFuncs-0.53-Y7aZQS/blib/lib:/home/eserte/.cpan/build/2015112115/Algorithm-Merge-0.08-Gfuo2B/blib/arch:/home/eserte/.cpan/build/2015112115/Algorithm-Merge-0.08-Gfuo2B/blib/lib:/home/eserte/.cpan/build/2015112115/Youri-Utils-v0.2.1-HBI4wo/blib/arch:/home/eserte/.cpan/build/2015112115/Youri-Utils-v0.2.1-HBI4wo/blib/lib:/home/eserte/.cpan/build/2015112115/XML-Liberal-0.30-9KUUjQ/blib/arch:/home/eserte/.cpan/build/2015112115/XML-Liberal-0.30-9KUUjQ/blib/lib:/home/eserte/.cpan/build/2015112115/Module-Pluggable-Fast-0.19-pr6zMv/blib/arch:/home/eserte/.cpan/build/2015112115/Module-Pluggable-Fast-0.19-pr6zMv/blib/lib:/home/eserte/.cpan/build/2015112115/Class-Field-0.23-WBumO_/blib/arch:/home/eserte/.cpan/build/2015112115/Class-Field-0.23-WBumO_/blib/lib:/home/eserte/.cpan/build/2015112115/App-Options-1.12-zrK76Q/blib/arch:/home/eserte/.cpan/build/2015112115/App-Options-1.12-zrK76Q/blib/lib:/home/eserte/.cpan/build/2015112115/Test-Mock-LWP-0.08-A8dHJ4/blib/arch:/home/eserte/.cpan/build/2015112115/Test-Mock-LWP-0.08-A8dHJ4/blib/lib:/home/eserte/.cpan/build/2015112115/bin-sqlpp-0.06-HzcqJ4/blib/arch:/home/eserte/.cpan/build/2015112115/bin-sqlpp-0.06-HzcqJ4/blib/lib:/home/eserte/.cpan/build/2015112115/PerlIO-via-Logger-1.01-2JfvSn/blib/arch:/home/eserte/.cpan/build/2015112115/PerlIO-via-Logger-1.01-2JfvSn/blib/lib:/home/eserte/.cpan/build/2015112115/Contextual-Call-0.01-GxPxLK/blib/arch:/home/eserte/.cpan/build/2015112115/Contextual-Call-0.01-GxPxLK/blib/lib"
    PERL5OPT=""
    PERL5_CPANPLUS_IS_RUNNING="31082"
    PERL5_CPAN_IS_RUNNING="31082"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="27764,31082"
    PERLDOC="-MPod::Perldoc::ToTextOverstrike"
    PERL_BATCH="yes"
    PERL_CANARY_STABILITY_NOPROMPT="1"
    PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1001/2015112109/cpanreporter_000_config.ini"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
  @INC:
    /home/eserte/.cpan/build/2015112115/XML-DOM-1.45-OGgCcc/blib/arch
    /home/eserte/.cpan/build/2015112115/XML-DOM-1.45-OGgCcc/blib/lib
    /home/eserte/.cpan/build/2015112115/libxml-perl-0.08-N9Sv44/blib/arch
    /home/eserte/.cpan/build/2015112115/libxml-perl-0.08-N9Sv44/blib/lib
    /home/eserte/.cpan/build/2015112115/XML-RegExp-0.04-2cI102/blib/arch
    /home/eserte/.cpan/build/2015112115/XML-RegExp-0.04-2cI102/blib/lib
    /home/eserte/.cpan/build/2015112115/HTML-TagParser-0.20-P9aVTB/blib/arch
    /home/eserte/.cpan/build/2015112115/HTML-TagParser-0.20-P9aVTB/blib/lib
    /home/eserte/.cpan/build/2015112115/Voting-Condorcet-RankedPairs-1.01-0z4EmR/blib/arch
    /home/eserte/.cpan/build/2015112115/Voting-Condorcet-RankedPairs-1.01-0z4EmR/blib/lib
    /home/eserte/.cpan/build/2015112115/Tie-FileSystem-2.15-SGtBiX/blib/arch
    /home/eserte/.cpan/build/2015112115/Tie-FileSystem-2.15-SGtBiX/blib/lib
    /home/eserte/.cpan/build/2015112115/Quantum-Superpositions-2.02-i_zrJp/blib/arch
    /home/eserte/.cpan/build/2015112115/Quantum-Superpositions-2.02-i_zrJp/blib/lib
    /home/eserte/.cpan/build/2015112115/Class-Multimethods-1.70-Ou0fYm/blib/arch
    /home/eserte/.cpan/build/2015112115/Class-Multimethods-1.70-Ou0fYm/blib/lib
    /home/eserte/.cpan/build/2015112115/Chart-Strip-1.08-rG6zKQ/blib/arch
    /home/eserte/.cpan/build/2015112115/Chart-Strip-1.08-rG6zKQ/blib/lib
    /home/eserte/.cpan/build/2015112115/POE-Component-OSCAR-0.05-vuscsa/blib/arch
    /home/eserte/.cpan/build/2015112115/POE-Component-OSCAR-0.05-vuscsa/blib/lib
    /home/eserte/.cpan/build/2015112115/Net-OSCAR-1.928-VS5Ytf/blib/arch
    /home/eserte/.cpan/build/2015112115/Net-OSCAR-1.928-VS5Ytf/blib/lib
    /home/eserte/.cpan/build/2015112115/SOCKS-0.03-GCW4eP/blib/arch
    /home/eserte/.cpan/build/2015112115/SOCKS-0.03-GCW4eP/blib/lib
    /home/eserte/.cpan/build/2015112115/Filter-Template-1.043-f6CGOZ/blib/arch
    /home/eserte/.cpan/build/2015112115/Filter-Template-1.043-f6CGOZ/blib/lib
    /home/eserte/.cpan/build/2015112115/Lingua-NL-Numbers-GroeneBoekje-0.10-rQ8ml0/blib/arch
    /home/eserte/.cpan/build/2015112115/Lingua-NL-Numbers-GroeneBoekje-0.10-rQ8ml0/blib/lib
    /home/eserte/.cpan/build/2015112115/Kwiki-IRCMode-0.302-AyHy7g/blib/arch
    /home/eserte/.cpan/build/2015112115/Kwiki-IRCMode-0.302-AyHy7g/blib/lib
    /home/eserte/.cpan/build/2015112115/Parse-IRCLog-1.106-Cukoun/blib/arch
    /home/eserte/.cpan/build/2015112115/Parse-IRCLog-1.106-Cukoun/blib/lib
    /home/eserte/.cpan/build/2015112115/Kwiki-0.39-FGuWSD/blib/arch
    /home/eserte/.cpan/build/2015112115/Kwiki-0.39-FGuWSD/blib/lib
    /home/eserte/.cpan/build/2015112115/Spoon-0.24-f89r5u/blib/arch
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