Bio-Biblio v1.70 Perl 5 v5.34.0 amd64-freebsd-ld

Status
Pass
From
Slaven Rezić
Dist
Bio-Biblio v1.70
Platform
Perl 5 v5.34.0 amd64-freebsd-ld
Date
2022-02-21 22:28:43
ID
a0ac94e6-9365-11ec-b9b3-2b621f24ea8f
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear carandraug,

This is a computer-generated report for Bio-Biblio-1.70
on perl 5.34.0, created by CPAN-Reporter-1.2018.

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 "/usr/perl5.34.0Dp/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ............ ok
t/Biblio.t ................ ok
t/biofetch.t .............. ok
t/eutils.t ................ ok
t/References.t ............ ok
t/release-eol.t ........... skipped: these tests are for release candidate testing
t/release-mojibake.t ...... skipped: these tests are for release candidate testing
t/release-no-tabs.t ....... skipped: these tests are for release candidate testing
t/release-pod-coverage.t .. skipped: these tests are for release candidate testing
t/release-pod-syntax.t .... skipped: these tests are for release candidate testing
All tests successful.
Files=10, Tests=609, 10 wallclock secs ( 0.05 usr  0.02 sys +  2.07 cusr  0.62 csys =  2.76 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                  Need Have    
    ----------------------- ---- --------
    Bio::Annotation::DBLink 0    1.7.8   
    Bio::DB::DBFetch        0    1.7.8   
    Bio::Root::IO           0    1.7.8   
    Bio::Root::Root         0    1.7.8   
    Bio::Root::RootI        0    1.7.8   
    Data::Dumper            0    2.183   
    Getopt::Std             0    1.13    
    LWP::Simple             0    6.55    
    parent                  0    0.238   
    SOAP::Lite              0    1.27    
    strict                  0    1.12    
    Symbol                  0    1.09    
    URI::Escape             0    5.09    
    utf8                    0    1.24    
    vars                    0    1.05    
    warnings                0    1.51    
    XML::Parser             0    2.46    
    XML::Twig               0    3.52    

build_requires:

    Module                  Need Have    
    ----------------------- ---- --------
    File::Find              0    1.39    
    File::Spec              0    3.80    
    File::Temp              0    0.2311  
    Test::More              0    1.302188

configure_requires:

    Module                  Need Have    
    ----------------------- ---- --------
    ExtUtils::MakeMaker     6.30 7.64    


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/freebsd13.0:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/usr/home/eserte/src/srezic-misc/scripts
    PERL5LIB = /home/cpansand/.cpan/build/2022022121/Bio-BLAST-0.4-1/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-BLAST-0.4-1/blib/lib:/home/cpansand/.cpan/build/2022022121/Test-Prereq-2.003-0/blib/arch:/home/cpansand/.cpan/build/2022022121/Test-Prereq-2.003-0/blib/lib:/home/cpansand/.cpan/build/2022022121/FileDirUtil-v0.04-0/blib/arch:/home/cpansand/.cpan/build/2022022121/FileDirUtil-v0.04-0/blib/lib:/home/cpansand/.cpan/build/2022022121/Params-Coerce-0.15-0/blib/arch:/home/cpansand/.cpan/build/2022022121/Params-Coerce-0.15-0/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-AlignIO-stockholm-1.7.3-0/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-AlignIO-stockholm-1.7.3-0/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-EUtilities-1.77-0/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-EUtilities-1.77-0/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-ASN1-EntrezGene-1.73-3/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-ASN1-EntrezGene-1.73-3/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-Cluster-1.7.3-3/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-Cluster-1.7.3-3/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-Variation-1.7.5-3/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-Variation-1.7.5-3/blib/lib:/home/cpansand/.cpan/build/2022022121/BioPerl-1.7.8-5/blib/arch:/home/cpansand/.cpan/build/2022022121/BioPerl-1.7.8-5/blib/lib:/home/cpansand/.cpan/build/2022022121/XML-DOM-1.46-6/blib/arch:/home/cpansand/.cpan/build/2022022121/XML-DOM-1.46-6/blib/lib:/home/cpansand/.cpan/build/2022022121/XML-RegExp-0.04-6/blib/arch:/home/cpansand/.cpan/build/2022022121/XML-RegExp-0.04-6/blib/lib:/home/cpansand/.cpan/build/2022022121/libxml-perl-0.08-6/blib/arch:/home/cpansand/.cpan/build/2022022121/libxml-perl-0.08-6/blib/lib:/home/cpansand/.cpan/build/2022022121/Test-Weaken-3.022000-5/blib/arch:/home/cpansand/.cpan/build/2022022121/Test-Weaken-3.022000-5/blib/lib:/home/cpansand/.cpan/build/2022022121/Data-Stag-0.14-5/blib/arch:/home/cpansand/.cpan/build/2022022121/Data-Stag-0.14-5/blib/lib
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 47114
    PERL5_CPAN_IS_RUNNING = 47114
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 19162,47114
    PERLDOC = -MPod::Perldoc::ToTextOverstrike
    PERL_BATCH = yes
    PERL_CANARY_STABILITY_NOPROMPT = 1
    PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2022022121/cpanreporter_000_config.ini
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_USE_UNSAFE_INC = 1
    SHELL = /usr/local/bin/zsh
    TERM = screen
    TMPDIR = /var/tmp/cpansmoker-1023/2022022121

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /usr/perl5.34.0Dp/bin/perl
    $UID/$EUID = 1023 / 1023
    $GID = 1023 1023
    $EGID = 1023 1023

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.28    
    CPAN::Meta          2.150010
    Cwd                 3.80    
    ExtUtils::CBuilder  0.280236
    ExtUtils::Command   7.64    
    ExtUtils::Install   2.20    
    ExtUtils::MakeMaker 7.64    
    ExtUtils::Manifest  1.73    
    ExtUtils::ParseXS   3.43    
    File::Spec          3.80    
    JSON                4.03    
    JSON::PP            4.06    
    Module::Build       0.4231  
    Module::Signature   0.87    
    Parse::CPAN::Meta   2.150010
    Test::Harness       3.43    
    Test::More          1.302188
    YAML                1.30    
    YAML::Syck          1.34    
    version             0.9928  


--

Summary of my perl5 (revision 5 version 34 subversion 0) configuration:
   
  Platform:
    osname=freebsd
    osvers=13.0-stable
    archname=amd64-freebsd-ld
    uname='freebsd cloud10.bbbike.org 13.0-stable freebsd 13.0-stable #1 stable13-n245702-3099792c874d: fri may 21 10:00:28 utc 2021 root@cloud10.bbbike.org:usrobjusrhomeprojectsfreebsdamd64.amd64sysgeneric amd64 '
    config_args='-ds -e -Dprefix=/usr/perl5.34.0Dp -Duselongdouble -Dcf_email=srezic@cpan.org -Doptimize=-O2 -pipe'
    hint=recommended
    useposix=true
    d_sigaction=define
    useithreads=undef
    usemultiplicity=undef
    use64bitint=define
    use64bitall=define
    uselongdouble=define
    usemymalloc=n
    default_inc_excludes_dot=define
  Compiler:
    cc='cc'
    ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
    optimize='-O2 -pipe'
    cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
    ccversion=''
    gccversion='FreeBSD Clang 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe)'
    gccosandvers=''
    intsize=4
    longsize=8
    ptrsize=8
    doublesize=8
    byteorder=12345678
    doublekind=3
    d_longlong=define
    longlongsize=8
    d_longdbl=define
    longdblsize=16
    longdblkind=3
    ivtype='long'
    ivsize=8
    nvtype='long double'
    nvsize=16
    Off_t='off_t'
    lseeksize=8
    alignbytes=16
    prototype=define
  Linker and Libraries:
    ld='cc'
    ldflags ='-pthread -Wl,-E  -fstack-protector-strong -L/usr/local/lib'
    libpth=/usr/lib /usr/local/lib /usr/lib/clang/11.0.1/lib
    libs=-lpthread -lgdbm -ldl -lm -lcrypt -lutil -lc
    perllibs=-lpthread -ldl -lm -lcrypt -lutil -lc
    libc=
    so=so
    useshrplib=false
    libperl=libperl.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs
    dlext=so
    d_dlsymun=undef
    ccdlflags=' '
    cccdlflags='-DPIC -fPIC'
    lddlflags='-shared  -L/usr/local/lib -fstack-protector-strong'


Characteristics of this binary (from libperl): 
  Compile-time options:
    HAS_TIMES
    PERLIO_LAYERS
    PERL_COPY_ON_WRITE
    PERL_DONT_CREATE_GVSV
    PERL_MALLOC_WRAP
    PERL_OP_PARENT
    PERL_PRESERVE_IVUV
    USE_64_BIT_ALL
    USE_64_BIT_INT
    USE_LARGE_FILES
    USE_LOCALE
    USE_LOCALE_COLLATE
    USE_LOCALE_CTYPE
    USE_LOCALE_NUMERIC
    USE_LOCALE_TIME
    USE_LONG_DOUBLE
    USE_PERLIO
    USE_PERL_ATOF
  Built under freebsd
  Compiled at May 25 2021 18:27:23
  %ENV:
    PERL5LIB="/home/cpansand/.cpan/build/2022022121/Bio-BLAST-0.4-1/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-BLAST-0.4-1/blib/lib:/home/cpansand/.cpan/build/2022022121/Test-Prereq-2.003-0/blib/arch:/home/cpansand/.cpan/build/2022022121/Test-Prereq-2.003-0/blib/lib:/home/cpansand/.cpan/build/2022022121/FileDirUtil-v0.04-0/blib/arch:/home/cpansand/.cpan/build/2022022121/FileDirUtil-v0.04-0/blib/lib:/home/cpansand/.cpan/build/2022022121/Params-Coerce-0.15-0/blib/arch:/home/cpansand/.cpan/build/2022022121/Params-Coerce-0.15-0/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-AlignIO-stockholm-1.7.3-0/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-AlignIO-stockholm-1.7.3-0/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-EUtilities-1.77-0/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-EUtilities-1.77-0/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-ASN1-EntrezGene-1.73-3/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-ASN1-EntrezGene-1.73-3/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-Cluster-1.7.3-3/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-Cluster-1.7.3-3/blib/lib:/home/cpansand/.cpan/build/2022022121/Bio-Variation-1.7.5-3/blib/arch:/home/cpansand/.cpan/build/2022022121/Bio-Variation-1.7.5-3/blib/lib:/home/cpansand/.cpan/build/2022022121/BioPerl-1.7.8-5/blib/arch:/home/cpansand/.cpan/build/2022022121/BioPerl-1.7.8-5/blib/lib:/home/cpansand/.cpan/build/2022022121/XML-DOM-1.46-6/blib/arch:/home/cpansand/.cpan/build/2022022121/XML-DOM-1.46-6/blib/lib:/home/cpansand/.cpan/build/2022022121/XML-RegExp-0.04-6/blib/arch:/home/cpansand/.cpan/build/2022022121/XML-RegExp-0.04-6/blib/lib:/home/cpansand/.cpan/build/2022022121/libxml-perl-0.08-6/blib/arch:/home/cpansand/.cpan/build/2022022121/libxml-perl-0.08-6/blib/lib:/home/cpansand/.cpan/build/2022022121/Test-Weaken-3.022000-5/blib/arch:/home/cpansand/.cpan/build/2022022121/Test-Weaken-3.022000-5/blib/lib:/home/cpansand/.cpan/build/2022022121/Data-Stag-0.14-5/blib/arch:/home/cpansand/.cpan/build/2022022121/Data-Stag-0.14-5/blib/lib"
    PERL5OPT=""
    PERL5_CPANPLUS_IS_RUNNING="47114"
    PERL5_CPAN_IS_RUNNING="47114"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="19162,47114"
    PERLDOC="-MPod::Perldoc::ToTextOverstrike"
    PERL_BATCH="yes"
    PERL_CANARY_STABILITY_NOPROMPT="1"
    PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2022022121/cpanreporter_000_config.ini"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
    PERL_USE_UNSAFE_INC="1"
  @INC:
    /home/cpansand/.cpan/build/2022022121/Bio-BLAST-0.4-1/blib/arch
    /home/cpansand/.cpan/build/2022022121/Bio-BLAST-0.4-1/blib/lib
    /home/cpansand/.cpan/build/2022022121/Test-Prereq-2.003-0/blib/arch
    /home/cpansand/.cpan/build/2022022121/Test-Prereq-2.003-0/blib/lib
    /home/cpansand/.cpan/build/2022022121/FileDirUtil-v0.04-0/blib/arch
    /home/cpansand/.cpan/build/2022022121/FileDirUtil-v0.04-0/blib/lib
    /home/cpansand/.cpan/build/2022022121/Params-Coerce-0.15-0/blib/arch
    /home/cpansand/.cpan/build/2022022121/Params-Coerce-0.15-0/blib/lib
    /home/cpansand/.cpan/build/2022022121/Bio-AlignIO-stockholm-1.7.3-0/blib/arch
    /home/cpansand/.cpan/build/2022022121/Bio-AlignIO-stockholm-1.7.3-0/blib/lib
    /home/cpansand/.cpan/build/2022022121/Bio-EUtilities-1.77-0/blib/arch
    /home/cpansand/.cpan/build/2022022121/Bio-EUtilities-1.77-0/blib/lib
    /home/cpansand/.cpan/build/2022022121/Bio-ASN1-EntrezGene-1.73-3/blib/arch
    /home/cpansand/.cpan/build/2022022121/Bio-ASN1-EntrezGene-1.73-3/blib/lib
    /home/cpansand/.cpan/build/2022022121/Bio-Cluster-1.7.3-3/blib/arch
    /home/cpansand/.cpan/build/2022022121/Bio-Cluster-1.7.3-3/blib/lib
    /home/cpansand/.cpan/build/2022022121/Bio-Variation-1.7.5-3/blib/arch
    /home/cpansand/.cpan/build/2022022121/Bio-Variation-1.7.5-3/blib/lib
    /home/cpansand/.cpan/build/2022022121/BioPerl-1.7.8-5/blib/arch
    /home/cpansand/.cpan/build/2022022121/BioPerl-1.7.8-5/blib/lib
    /home/cpansand/.cpan/build/2022022121/XML-DOM-1.46-6/blib/arch
    /home/cpansand/.cpan/build/2022022121/XML-DOM-1.46-6/blib/lib
    /home/cpansand/.cpan/build/2022022121/XML-RegExp-0.04-6/blib/arch
    /home/cpansand/.cpan/build/2022022121/XML-RegExp-0.04-6/blib/lib
    /home/cpansand/.cpan/build/2022022121/libxml-perl-0.08-6/blib/arch
    /home/cpansand/.cpan/build/2022022121/libxml-perl-0.08-6/blib/lib
    /home/cpansand/.cpan/build/2022022121/Test-Weaken-3.022000-5/blib/arch
    /home/cpansand/.cpan/build/2022022121/Test-Weaken-3.022000-5/blib/lib
    /home/cpansand/.cpan/build/2022022121/Data-Stag-0.14-5/blib/arch
    /home/cpansand/.cpan/build/2022022121/Data-Stag-0.14-5/blib/lib
    /usr/perl5.34.0Dp/lib/site_perl/5.34.0/amd64-freebsd-ld
    /usr/perl5.34.0Dp/lib/site_perl/5.34.0
    /usr/perl5.34.0Dp/lib/5.34.0/amd64-freebsd-ld
    /usr/perl5.34.0Dp/lib/5.34.0
    .