BioPerl-Run v1.007002 Perl 5 v5.22.1 amd64-freebsd-thread-multi
- Status
- Fail
- From
- Chris Williams (BINGOS)
- Dist
-
BioPerl-Run v1.007002
- Platform
- Perl 5 v5.22.1 amd64-freebsd-thread-multi
- Date
- 2017-09-15 12:01:42
- ID
- a3b426fa-9a0d-11e7-a074-e1beba07c9dd
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9168. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
# Required executable for Bio::Tools::Run::Alignment::Amap is not present
t/Amap.t ...................... ok
t/AnalysisFactory_soap.t ...... skipped: Network tests have not been requested
t/Analysis_soap.t ............. skipped: Network tests have not been requested
t/BEDTools.t .................. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
t/BWA.t ....................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Alignment::Blat is not present
t/Blat.t ...................... ok
t/Bowtie.t .................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Cap3 is not present
t/Cap3.t ...................... ok
# Required executable for Bio::Tools::Run::Coil is not present
t/Coil.t ...................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::Consense is not present
t/Consense.t .................. ok
# Required executable for Bio::Tools::Run::Alignment::DBA is not present
t/DBA.t ....................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::DrawGram is not present
t/DrawGram.t .................. ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::DrawTree is not present
t/DrawTree.t .................. ok
t/EMBOSS.t .................... skipped: The optional module XML::Twig (or dependencies thereof) was not installed
t/Ensembl.t ................... skipped: Network tests have not been requested
# Looks like you planned 7 tests but ran 2.
t/Eponine.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/7 subtests
# Required executable for Bio::Tools::Run::Alignment::Exonerate is not present
t/Exonerate.t ................. ok
# Required executable for Bio::Tools::Run::Phylo::FastTree is not present
t/FastTree.t .................. ok
# Required executable for Bio::Tools::Run::FootPrinter is not present
t/FootPrinter.t ............... ok
t/Genemark.hmm.prokaryotic.t .. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Genewise is not present
t/Genewise.t .................. ok
# Required environment variable $GENSCANDIR is not set
t/Genscan.t ................... ok
# Required executable for Bio::Tools::Run::Phylo::Gerp is not present
t/Gerp.t ...................... ok
t/Glimmer2.t .................. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
t/Glimmer3.t .................. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
t/Gumby.t ..................... ok
# Required executable for Bio::Tools::Run::Hmmer is not present
t/Hmmer.t ..................... ok
# Required executable for Bio::Tools::Run::Phylo::Hyphy::REL is not present
t/Hyphy.t ..................... ok
# Required executable for Bio::Tools::Run::Infernal is not present
t/Infernal.t .................. ok
# Required executable for Bio::Tools::Run::Alignment::Kalign is not present
t/Kalign.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::LVB is not present
t/LVB.t ....................... ok
# Required executable for Bio::Tools::Run::Alignment::Lagan is not present
t/Lagan.t ..................... ok
# Required executable for Bio::Tools::Run::Alignment::MAFFT is not present
t/MAFFT.t ..................... ok
t/MCS.t ....................... skipped: The optional module Config::Any (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Alignment::MSAProbs is not present
t/MSAProbs.t .................. ok
t/Maq.t ....................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
t/Match.t ..................... skipped: The optional module Config::Any (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Mdust is not present
t/Mdust.t ..................... ok
# Required executable for Bio::Tools::Run::Meme is not present
t/Meme.t ...................... ok
t/Minimo.t .................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Phylo::Molphy::ProtML is not present
t/Molphy.t .................... ok
# Required executable for Bio::Tools::Run::Alignment::Muscle is not present
t/Muscle.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::Neighbor is not present
t/Neighbor.t .................. ok
t/Newbler.t ................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Phylo::Njtree::Best is not present
t/Njtree.t .................... ok
# Required executable for Bio::Tools::Run::Alignment::Pal2Nal is not present
t/Pal2Nal.t ................... ok
t/PhastCons.t ................. skipped: The optional module Clone (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Phrap is not present
t/Phrap.t ..................... ok
# Required executable for Bio::Tools::Run::Phylo::Phyml is not present
t/Phyml.t ..................... ok
# Required executable for Bio::Tools::Run::Primate is not present
t/Primate.t ................... ok
t/Primer3.t ................... skipped: The optional module Clone (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Prints is not present
t/Prints.t .................... ok
# Required executable for Bio::Tools::Run::Alignment::Probalign is not present
t/Probalign.t ................. ok
# Required executable for Bio::Tools::Run::Alignment::Probcons is not present
t/Probcons.t .................. ok
# Required executable for Bio::Tools::Run::Profile is not present
t/Profile.t ................... ok
# Required executable for Bio::Tools::Run::Promoterwise is not present
t/Promoterwise.t .............. ok
t/ProtDist.t .................. ok
t/ProtPars.t .................. ok
# Required executable for Bio::Tools::Run::Pseudowise is not present
t/Pseudowise.t ................ ok
# Required executable for Bio::Tools::Run::Phylo::QuickTree is not present
t/QuickTree.t ................. ok
# Required executable for Bio::Tools::Run::Phylo::Raxml is not present
t/Raxml.t ..................... ok
# Required executable for Bio::Tools::Run::RepeatMasker is not present
t/RepeatMasker.t .............. ok
# Failed test 'use Bio::Tools::Run::StandAloneBlastPlus;'
# at t/SABlastPlus.t line 15.
# Tried to use 'Bio::Tools::Run::StandAloneBlastPlus'.
# Error: Can't locate IPC/Run.pm in @INC (you may need to install the IPC::Run module) (@INC contains: ../../.. ../../../../5.22.1 ../../../.. ../lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/_build/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/BSgvJ3HjcP/IO-String-1.08/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/BSgvJ3HjcP/IO-String-1.08/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/aPhMZ1Tyct/Data-Stag-0.14/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/aPhMZ1Tyct/Data-Stag-0.14/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Sd4kdhKGtu/Class-Data-Inheritable-0.08/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Sd4kdhKGtu/Class-Data-Inheritable-0.08/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/7Sn6SsNcq_/Devel-StackTrace-2.02/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/7Sn6SsNcq_/Devel-StackTrace-2.02/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/mUWafeoVf0/Exception-Class-1.43/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/mUWafeoVf0/Exception-Class-1.43/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/FyNqpXywbL/Test-Deep-1.127/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/FyNqpXywbL/Test-Deep-1.127/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/i4pbM32Y6V/Capture-Tiny-0.46/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/i4pbM32Y6V/Capture-Tiny-0.46/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Btmbxqxw6l/Algorithm-Diff-1.1903/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Btmbxqxw6l/Algorithm-Diff-1.1903/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/v6mNrLO7kC/Text-Diff-1.45/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/v6mNrLO7kC/Text-Diff-1.45/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/AeUlOaXGb_/Test-Differences-0.64/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/AeUlOaXGb_/Test-Differences-0.64/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/MwD8hIBZtV/Sub-Uplevel-0.2800/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/MwD8hIBZtV/Sub-Uplevel-0.2800/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/8z9szCgjF1/Test-Exception-0.43/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/8z9szCgjF1/Test-Exception-0.43/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/f80DsHxOuX/Test-Warn-0.32/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/f80DsHxOuX/Test-Warn-0.32/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Igo7onopVR/Test-Most-0.35/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Igo7onopVR/Test-Most-0.35/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/3_zZ2iENaH/Test-Needs-0.002005/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/3_zZ2iENaH/Test-Needs-0.002005/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/e6j1nnNcBA/URI-1.72/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/e6j1nnNcBA/URI-1.72/blib/arch /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/YFOdZeTHm4/BioPerl-1.007002/blib/lib /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/YFOdZeTHm4/BioPerl-1.007002/blib/arch /usr/home/cpan/pit/thr/perl-5.22.1/lib/site_perl/5.22.1/amd64-freebsd-thread-multi /usr/home/cpan/pit/thr/perl-5.22.1/lib/site_perl/5.22.1 /usr/home/cpan/pit/thr/perl-5.22.1/lib/5.22.1/amd64-freebsd-thread-multi /usr/home/cpan/pit/thr/perl-5.22.1/lib/5.22.1 .) at /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm line 417.
# BEGIN failed--compilation aborted at /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm line 417.
# Compilation failed in require at /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib/Bio/Tools/Run/BlastPlus.pm line 84.
# BEGIN failed--compilation aborted at /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib/Bio/Tools/Run/BlastPlus.pm line 84.
# Compilation failed in require at /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm line 179.
# BEGIN failed--compilation aborted at /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm line 179.
# Compilation failed in require at /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib/Bio/Tools/Run/StandAloneBlastPlus.pm line 427.
# BEGIN failed--compilation aborted at /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib/Bio/Tools/Run/StandAloneBlastPlus.pm line 427.
# Compilation failed in require at t/SABlastPlus.t line 15.
# BEGIN failed--compilation aborted at t/SABlastPlus.t line 15.
# Failed test 'use Bio::Tools::Run::WrapperBase::CommandExts;'
# at t/SABlastPlus.t line 17.
# Tried to use 'Bio::Tools::Run::WrapperBase::CommandExts'.
# Error: Attempt to reload Bio/Tools/Run/WrapperBase/CommandExts.pm aborted.
# Compilation failed in require at t/SABlastPlus.t line 17.
# BEGIN failed--compilation aborted at t/SABlastPlus.t line 17.
Can't locate object method "new" via package "Bio::Tools::Run::BlastPlus" at t/SABlastPlus.t line 21.
# Looks like your test exited with 255 just after 3.
t/SABlastPlus.t ...............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 72/73 subtests
# Required executable for Bio::Tools::Run::Phylo::SLR is not present
t/SLR.t ....................... ok
t/Samtools.t .................. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Seg is not present
t/Seg.t ....................... ok
# Required executable for Bio::Tools::Run::Phylo::Semphy is not present
t/Semphy.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::SeqBoot is not present
t/SeqBoot.t ................... ok
# Required executable for Bio::Tools::Run::Signalp is not present
t/Signalp.t ................... ok
# Required executable for Bio::Tools::Run::Alignment::Sim4 is not present
t/Sim4.t ...................... ok
# Required executable for Bio::Tools::Run::Simprot is not present
t/Simprot.t ................... ok
t/SoapEU-function.t ........... skipped: The optional module Bio::DB::ESoap (or dependencies thereof) was not installed
t/SoapEU-unit.t ............... skipped: The optional module Bio::DB::ESoap (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Alignment::StandAloneFasta is not present
t/StandAloneFasta.t ........... ok
t/TigrAssembler.t ............. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Tmhmm is not present
t/Tmhmm.t ..................... ok
t/TribeMCL.t .................. ok
t/Vista.t ..................... ok
# Required executable for Bio::Tools::Run::Alignment::Gmap is not present
t/gmap-run.t .................. ok
t/tRNAscanSE.t ................ skipped: The optional module IPC::Run (or dependencies thereof) was not installed
Test Summary Report
-------------------
t/Eponine.t (Wstat: 65280 Tests: 2 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 2.
t/SABlastPlus.t (Wstat: 65280 Tests: 3 Failed: 2)
Failed tests: 1, 3
Non-zero exit status: 255
Parse errors: Bad plan. You planned 73 tests but ran 3.
Files=80, Tests=1203, 44 wallclock secs ( 0.43 usr 0.60 sys + 17.89 cusr 24.48 csys = 43.41 CPU)
Result: FAIL
Failed 2/80 test programs. 2/1203 subtests failed.
MISSING PREREQUISITES:
It was observed that the test suite seem to fail without these modules:
IPC::Run
As such, adding the prerequisite module(s) to 'PREREQ_PM' in your
Makefile.PL should solve this problem. For example:
WriteMakefile(
AUTHOR => 'Christopher Fields (bioperl-l@bioperl.org)',
... # other information
PREREQ_PM => {
'IPC::Run' => '0', # or a minimum working version
}
);
Thanks! :-)
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
Bio::Root::Root 0 0
Bio::Root::Test 0 0
Bio::Root::Version 1.007002 1.007000
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9168
CPANPLUS::Dist::Build 0.88
Cwd 3.62
ExtUtils::CBuilder 0.280226
ExtUtils::Command 7.30
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
Module::Build 0.4224
Pod::Parser 1.63
Pod::Simple 3.29
Test2 1.302086
Test::Harness 3.39
Test::More 1.302086
version 0.9918
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 1.02.
Powered by minismokebox version 0.68
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/YFOdZeTHm4/BioPerl-1.007002/blib/script:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/aPhMZ1Tyct/Data-Stag-0.14/blib/script:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/home/cpan/bin
PERL5LIB = :/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/BSgvJ3HjcP/IO-String-1.08/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/BSgvJ3HjcP/IO-String-1.08/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/aPhMZ1Tyct/Data-Stag-0.14/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/aPhMZ1Tyct/Data-Stag-0.14/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Sd4kdhKGtu/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Sd4kdhKGtu/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/7Sn6SsNcq_/Devel-StackTrace-2.02/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/7Sn6SsNcq_/Devel-StackTrace-2.02/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/mUWafeoVf0/Exception-Class-1.43/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/mUWafeoVf0/Exception-Class-1.43/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/FyNqpXywbL/Test-Deep-1.127/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/FyNqpXywbL/Test-Deep-1.127/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/i4pbM32Y6V/Capture-Tiny-0.46/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/i4pbM32Y6V/Capture-Tiny-0.46/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Btmbxqxw6l/Algorithm-Diff-1.1903/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Btmbxqxw6l/Algorithm-Diff-1.1903/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/v6mNrLO7kC/Text-Diff-1.45/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/v6mNrLO7kC/Text-Diff-1.45/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/AeUlOaXGb_/Test-Differences-0.64/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/AeUlOaXGb_/Test-Differences-0.64/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/MwD8hIBZtV/Sub-Uplevel-0.2800/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/MwD8hIBZtV/Sub-Uplevel-0.2800/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/8z9szCgjF1/Test-Exception-0.43/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/8z9szCgjF1/Test-Exception-0.43/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/f80DsHxOuX/Test-Warn-0.32/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/f80DsHxOuX/Test-Warn-0.32/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Igo7onopVR/Test-Most-0.35/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Igo7onopVR/Test-Most-0.35/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/3_zZ2iENaH/Test-Needs-0.002005/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/3_zZ2iENaH/Test-Needs-0.002005/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/e6j1nnNcBA/URI-1.72/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/e6j1nnNcBA/URI-1.72/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/YFOdZeTHm4/BioPerl-1.007002/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/YFOdZeTHm4/BioPerl-1.007002/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/arch
PERL5_CPANPLUS_IS_RUNNING = 44666
PERL5_CPANPLUS_IS_VERSION = 0.9168
PERL5_MINISMOKEBOX = 0.68
PERL5_YACSMOKE_BASE = /usr/home/cpan/pit/thr/conf/perl-5.22.1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/local/bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /usr/home/cpan/pit/thr/perl-5.22.1/bin/perl5.22.1
UID: $< = 1002
EUID: $> = 1002
GID: $( = 1002 1002
EGID: $) = 1002 1002
-------------------------------
--
Summary of my perl5 (revision 5 version 22 subversion 1) configuration:
Platform:
osname=freebsd, osvers=11.1-release, archname=amd64-freebsd-thread-multi
uname='freebsd fforc 11.1-release freebsd 11.1-release #0 r321309: fri jul 21 02:08:28 utc 2017 root@releng2.nyi.freebsd.org:usrobjusrsrcsysgeneric amd64 '
config_args='-des -Dprefix=/usr/home/cpan/pit/thr/perl-5.22.1 -Dusethreads'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_FORTIFY_SOURCE=2',
optimize='-O',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='4.2.1 Compatible FreeBSD Clang 4.0.0 (tags/RELEASE_400/final 297347)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-pthread -Wl,-E -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib /usr/bin/../lib/clang/4.0.0/lib /usr/lib
libs=-lpthread -lgdbm -lm -lcrypt -lutil
perllibs=-lpthread -lm -lcrypt -lutil
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
USE_64_BIT_ALL USE_64_BIT_INT USE_ITHREADS
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
USE_PERLIO USE_PERL_ATOF USE_REENTRANT_API
Locally applied patches:
Devel::PatchPerl 1.48
Built under freebsd
Compiled at Jul 27 2017 14:43:25
%ENV:
PERL5LIB=":/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/BSgvJ3HjcP/IO-String-1.08/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/BSgvJ3HjcP/IO-String-1.08/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/aPhMZ1Tyct/Data-Stag-0.14/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/aPhMZ1Tyct/Data-Stag-0.14/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Sd4kdhKGtu/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Sd4kdhKGtu/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/7Sn6SsNcq_/Devel-StackTrace-2.02/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/7Sn6SsNcq_/Devel-StackTrace-2.02/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/mUWafeoVf0/Exception-Class-1.43/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/mUWafeoVf0/Exception-Class-1.43/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/FyNqpXywbL/Test-Deep-1.127/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/FyNqpXywbL/Test-Deep-1.127/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/i4pbM32Y6V/Capture-Tiny-0.46/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/i4pbM32Y6V/Capture-Tiny-0.46/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Btmbxqxw6l/Algorithm-Diff-1.1903/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Btmbxqxw6l/Algorithm-Diff-1.1903/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/v6mNrLO7kC/Text-Diff-1.45/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/v6mNrLO7kC/Text-Diff-1.45/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/AeUlOaXGb_/Test-Differences-0.64/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/AeUlOaXGb_/Test-Differences-0.64/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/MwD8hIBZtV/Sub-Uplevel-0.2800/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/MwD8hIBZtV/Sub-Uplevel-0.2800/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/8z9szCgjF1/Test-Exception-0.43/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/8z9szCgjF1/Test-Exception-0.43/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/f80DsHxOuX/Test-Warn-0.32/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/f80DsHxOuX/Test-Warn-0.32/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Igo7onopVR/Test-Most-0.35/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Igo7onopVR/Test-Most-0.35/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/3_zZ2iENaH/Test-Needs-0.002005/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/3_zZ2iENaH/Test-Needs-0.002005/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/e6j1nnNcBA/URI-1.72/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/e6j1nnNcBA/URI-1.72/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/YFOdZeTHm4/BioPerl-1.007002/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/YFOdZeTHm4/BioPerl-1.007002/blib/arch:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib:/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/arch"
PERL5_CPANPLUS_IS_RUNNING="44666"
PERL5_CPANPLUS_IS_VERSION="0.9168"
PERL5_MINISMOKEBOX="0.68"
PERL5_YACSMOKE_BASE="/usr/home/cpan/pit/thr/conf/perl-5.22.1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/BSgvJ3HjcP/IO-String-1.08/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/BSgvJ3HjcP/IO-String-1.08/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/aPhMZ1Tyct/Data-Stag-0.14/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/aPhMZ1Tyct/Data-Stag-0.14/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Sd4kdhKGtu/Class-Data-Inheritable-0.08/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Sd4kdhKGtu/Class-Data-Inheritable-0.08/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/7Sn6SsNcq_/Devel-StackTrace-2.02/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/7Sn6SsNcq_/Devel-StackTrace-2.02/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/mUWafeoVf0/Exception-Class-1.43/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/mUWafeoVf0/Exception-Class-1.43/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/FyNqpXywbL/Test-Deep-1.127/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/FyNqpXywbL/Test-Deep-1.127/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/i4pbM32Y6V/Capture-Tiny-0.46/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/i4pbM32Y6V/Capture-Tiny-0.46/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Btmbxqxw6l/Algorithm-Diff-1.1903/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Btmbxqxw6l/Algorithm-Diff-1.1903/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/v6mNrLO7kC/Text-Diff-1.45/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/v6mNrLO7kC/Text-Diff-1.45/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/AeUlOaXGb_/Test-Differences-0.64/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/AeUlOaXGb_/Test-Differences-0.64/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/MwD8hIBZtV/Sub-Uplevel-0.2800/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/MwD8hIBZtV/Sub-Uplevel-0.2800/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/8z9szCgjF1/Test-Exception-0.43/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/8z9szCgjF1/Test-Exception-0.43/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/f80DsHxOuX/Test-Warn-0.32/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/f80DsHxOuX/Test-Warn-0.32/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Igo7onopVR/Test-Most-0.35/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/Igo7onopVR/Test-Most-0.35/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/3_zZ2iENaH/Test-Needs-0.002005/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/3_zZ2iENaH/Test-Needs-0.002005/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/e6j1nnNcBA/URI-1.72/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/e6j1nnNcBA/URI-1.72/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/YFOdZeTHm4/BioPerl-1.007002/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/YFOdZeTHm4/BioPerl-1.007002/blib/arch
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/lib
/usr/home/cpan/pit/thr/conf/perl-5.22.1/.cpanplus/5.22.1/build/xPZCniUn6R/BioPerl-Run-1.007002/blib/arch
/usr/home/cpan/pit/thr/perl-5.22.1/lib/site_perl/5.22.1/amd64-freebsd-thread-multi
/usr/home/cpan/pit/thr/perl-5.22.1/lib/site_perl/5.22.1
/usr/home/cpan/pit/thr/perl-5.22.1/lib/5.22.1/amd64-freebsd-thread-multi
/usr/home/cpan/pit/thr/perl-5.22.1/lib/5.22.1
.