Microarray v0.45c Perl 5 v5.24.4 x86_64-linux-ld
- Status
- Fail
- From
- Slaven Rezić
- Dist
-
Microarray v0.45c
- Platform
- Perl 5 v5.24.4 x86_64-linux-ld
- Date
- 2021-08-14 11:34:54
- ID
- a513869c-fcf3-11eb-a85d-a43f1f24ea8f
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Jones,
This is a computer-generated report for Microarray-0.45c
on perl 5.24.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/opt/perl-5.24.4D/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/Microarray-File-Data-BlueFuse.t .... ok
t/Microarray-File-Data-Quantarray.t .. ok
t/Microarray-File-Data.t ............. ok
t/Microarray-File-GAL.t .............. ok
t/Microarray-Image-CGH_Plot.t ........ ok
# Failed test 'mean_ratios'
# at t/Microarray-Reporter.t line 67.
# got: '0.788117500091487656'
# expected: '0.788117500091488'
# Failed test 'ratio means'
# at t/Microarray-Reporter.t line 68.
# got: '0.788014389751689041'
# expected: '0.788014389751689'
# Failed test 'log_mean_ratios'
# at t/Microarray-Reporter.t line 69.
# got: '-0.343559536947397402'
# expected: '-0.343559536947397'
# Failed test 'log_ratio means'
# at t/Microarray-Reporter.t line 70.
# got: '-0.343706120238891977'
# expected: '-0.343706120238892'
# Failed test 'analysed data hash'
# at t/Microarray-Reporter.t line 73.
# +----+------------------------------------------------+---------------------------------------------+
# | Elt|Got |Expected |
# +----+------------------------------------------------+---------------------------------------------+
# | 0|{ |{ |
# * 1| M_mean_of_ratios => '-0.343559536947397402', | M_mean_of_ratios => '-0.343559536947397', *
# * 2| M_ratio_of_means => '-0.343706120238891977', | M_ratio_of_means => '-0.343706120238892', *
# | 3| ch1_mean => '4490.5', | ch1_mean => '4490.5', |
# | 4| ch2_mean => '5698.5' | ch2_mean => '5698.5' |
# | 5|} |} |
# +----+------------------------------------------------+---------------------------------------------+
# Failed test 'all_ratios array'
# at t/Microarray-Reporter.t line 79.
# +----+---------------------------+------------------------+
# | Elt|Got |Expected |
# +----+---------------------------+------------------------+
# | 0|[ |[ |
# * 1| '0.782091097308488613', | '0.782091097308489', *
# * 2| '0.794143902874486699' | '0.794143902874487' *
# | 3|] |] |
# +----+---------------------------+------------------------+
# Looks like you failed 6 tests of 28.
t/Microarray-Reporter.t ..............
Dubious, test returned 6 (wstat 1536, 0x600)
Failed 6/28 subtests
t/Microarray-Spot.t .................. ok
t/Microarray.t ....................... ok
Test Summary Report
-------------------
t/Microarray-Reporter.t (Wstat: 1536 Tests: 28 Failed: 6)
Failed tests: 13-16, 18, 24
Non-zero exit status: 6
Files=8, Tests=79, 5 wallclock secs ( 0.26 usr 0.34 sys + 2.84 cusr 1.79 csys = 5.23 CPU)
Result: FAIL
Failed 1/8 test programs. 6/79 subtests failed.
Makefile:958: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- ------- --------
File::Basename 2.73 2.85
File::Slurp 9999.12 9999.32
FileHandle 2.01 2.02
GD 2.32 2.73
Image::ExifTool 6.66 12.26
Module::List 0.001 0.004
Statistics::Descriptive 2.6 3.0800
Test::Deep 0.096 1.128
Test::Differences 0.47 0.68
Test::Group 0.07 0.20
Test::Image::GD 0.03 0.03
Test::More 0.62 1.001014
build_requires:
Module Need Have
----------------------- ------- --------
ExtUtils::MakeMaker 0 7.10_02
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = C
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB = /home/cpansand/.local/share/.cpan/build/2021080701/Statistics-Descriptive-3.0800-jfqUXt/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Statistics-Descriptive-3.0800-jfqUXt/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-0.430-F4L62o/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-0.430-F4L62o/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-LeakTrace-0.17-53qK68/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-LeakTrace-0.17-53qK68/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Exporter-Tiny-1.002002-yS0Vg2/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Exporter-Tiny-1.002002-yS0Vg2/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-XS-0.430-KBulvE/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-XS-0.430-KBulvE/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Group-0.20-NdGTdt/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Group-0.20-NdGTdt/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Cmd-1.09-4LtTBq/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Cmd-1.09-4LtTBq/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/File-Slurp-9999.32-rbJlJO/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/File-Slurp-9999.32-rbJlJO/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Image-GD-0.03-o4fDl1/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Image-GD-0.03-o4fDl1/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Module-List-0.004-OG3HYy/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Module-List-0.004-OG3HYy/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Image-ExifTool-12.26-rZR3ox/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Image-ExifTool-12.26-rZR3ox/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/GD-2.73-8rtQ7R/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/GD-2.73-8rtQ7R/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Fork-0.02-HKxNzL/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Fork-0.02-HKxNzL/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Module-Build-0.4231-kOLNuG/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Module-Build-0.4231-kOLNuG/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/ExtUtils-PkgConfig-1.16-ZywUd1/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/ExtUtils-PkgConfig-1.16-ZywUd1/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Differences-0.68-H9chIY/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Differences-0.68-H9chIY/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 22637
PERL5_CPAN_IS_RUNNING = 22637
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 11178,22637
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2021080622/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2021080622
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.24.4D/bin/perl
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- ----------
CPAN 2.11_01
CPAN::Meta 2.150005
Cwd 3.63_01
ExtUtils::CBuilder 0.280225
ExtUtils::Command 7.10_02
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.10_02
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.31
File::Spec 3.63_01
JSON n/a
JSON::PP 2.27300_01
Module::Build 0.4231
Module::Signature n/a
Parse::CPAN::Meta 1.4417_001
Test::Harness 3.36_01
Test::More 1.001014
YAML 1.29
YAML::Syck 1.31
version 0.9916
--
Summary of my perl5 (revision 5 version 24 subversion 4) configuration:
Platform:
osname=linux, osvers=4.9.0-9-amd64, archname=x86_64-linux-ld
uname='linux debian9 4.9.0-9-amd64 #1 smp debian 4.9.168-1+deb9u4 (2019-07-19) x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.24.4D -Duselongdouble -Dcf_email=srezic@cpan.org'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
optimize='-O2',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='6.3.0 20170516', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='long double', nvsize=16, Off_t='off_t', lseeksize=8
alignbytes=16, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
USE_LONG_DOUBLE USE_PERLIO USE_PERL_ATOF
Built under linux
Compiled at Aug 6 2019 17:58:28
%ENV:
PERL5LIB="/home/cpansand/.local/share/.cpan/build/2021080701/Statistics-Descriptive-3.0800-jfqUXt/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Statistics-Descriptive-3.0800-jfqUXt/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-0.430-F4L62o/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-0.430-F4L62o/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-LeakTrace-0.17-53qK68/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-LeakTrace-0.17-53qK68/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Exporter-Tiny-1.002002-yS0Vg2/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Exporter-Tiny-1.002002-yS0Vg2/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-XS-0.430-KBulvE/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-XS-0.430-KBulvE/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Group-0.20-NdGTdt/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Group-0.20-NdGTdt/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Cmd-1.09-4LtTBq/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Cmd-1.09-4LtTBq/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/File-Slurp-9999.32-rbJlJO/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/File-Slurp-9999.32-rbJlJO/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Image-GD-0.03-o4fDl1/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Image-GD-0.03-o4fDl1/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Module-List-0.004-OG3HYy/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Module-List-0.004-OG3HYy/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Image-ExifTool-12.26-rZR3ox/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Image-ExifTool-12.26-rZR3ox/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/GD-2.73-8rtQ7R/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/GD-2.73-8rtQ7R/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Fork-0.02-HKxNzL/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Fork-0.02-HKxNzL/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Module-Build-0.4231-kOLNuG/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Module-Build-0.4231-kOLNuG/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/ExtUtils-PkgConfig-1.16-ZywUd1/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/ExtUtils-PkgConfig-1.16-ZywUd1/blib/lib:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Differences-0.68-H9chIY/blib/arch:/home/cpansand/.local/share/.cpan/build/2021080701/Test-Differences-0.68-H9chIY/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="22637"
PERL5_CPAN_IS_RUNNING="22637"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="11178,22637"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2021080622/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/cpansand/.local/share/.cpan/build/2021080701/Statistics-Descriptive-3.0800-jfqUXt/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Statistics-Descriptive-3.0800-jfqUXt/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-0.430-F4L62o/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-0.430-F4L62o/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Test-LeakTrace-0.17-53qK68/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Test-LeakTrace-0.17-53qK68/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Exporter-Tiny-1.002002-yS0Vg2/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Exporter-Tiny-1.002002-yS0Vg2/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-XS-0.430-KBulvE/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/List-MoreUtils-XS-0.430-KBulvE/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Group-0.20-NdGTdt/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Group-0.20-NdGTdt/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Cmd-1.09-4LtTBq/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Cmd-1.09-4LtTBq/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/File-Slurp-9999.32-rbJlJO/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/File-Slurp-9999.32-rbJlJO/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Image-GD-0.03-o4fDl1/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Image-GD-0.03-o4fDl1/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Module-List-0.004-OG3HYy/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Module-List-0.004-OG3HYy/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Image-ExifTool-12.26-rZR3ox/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Image-ExifTool-12.26-rZR3ox/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/GD-2.73-8rtQ7R/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/GD-2.73-8rtQ7R/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Fork-0.02-HKxNzL/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Fork-0.02-HKxNzL/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Module-Build-0.4231-kOLNuG/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Module-Build-0.4231-kOLNuG/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/ExtUtils-PkgConfig-1.16-ZywUd1/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/ExtUtils-PkgConfig-1.16-ZywUd1/blib/lib
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Differences-0.68-H9chIY/blib/arch
/home/cpansand/.local/share/.cpan/build/2021080701/Test-Differences-0.68-H9chIY/blib/lib
/opt/perl-5.24.4D/lib/site_perl/5.24.4/x86_64-linux-ld
/opt/perl-5.24.4D/lib/site_perl/5.24.4
/opt/perl-5.24.4D/lib/5.24.4/x86_64-linux-ld
/opt/perl-5.24.4D/lib/5.24.4
.