BioPerl v1.007002 Perl 5 v5.24.3 x86_64-linux-multi
- Status
- Fail
- From
- Nigel Horne
- Dist
-
BioPerl v1.007002
- Platform
- Perl 5 v5.24.3 x86_64-linux-multi
- Date
- 2018-04-09 03:54:07
- ID
- a6ff3e9c-3ba9-11e8-91ce-d3e3deac0b3f
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for BioPerl-1.007002
on perl 5.24.3, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
t/Align/AlignUtil.t .................... ok
t/Align/AlignStats.t ................... ok
t/Align/Graphics.t ..................... skipped: The optional module GD (or dependencies thereof) was not installed
t/Align/TreeBuild.t .................... ok
t/Align/SimpleAlign.t .................. ok
t/Align/Utilities.t .................... ok
t/AlignIO/AlignIO.t .................... ok
t/AlignIO/arp.t ........................ ok
t/AlignIO/bl2seq.t ..................... ok
t/AlignIO/clustalw.t ................... ok
t/AlignIO/fasta.t ...................... ok
t/AlignIO/emboss.t ..................... ok
t/AlignIO/maf.t ........................ ok
t/AlignIO/largemultifasta.t ............ ok
t/AlignIO/mase.t ....................... ok
t/AlignIO/mega.t ....................... ok
t/AlignIO/meme.t ....................... ok
t/AlignIO/metafasta.t .................. ok
t/AlignIO/nexml.t ...................... skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/AlignIO/msf.t ........................ ok
t/AlignIO/pfam.t ....................... ok
t/AlignIO/nexus.t ...................... ok
t/AlignIO/phylip.t ..................... ok
t/AlignIO/po.t ......................... ok
t/AlignIO/prodom.t ..................... ok
t/AlignIO/psi.t ........................ ok
t/AlignIO/selex.t ...................... ok
t/AlignIO/stockholm.t .................. ok
t/Alphabet.t ........................... ok
t/AlignIO/xmfa.t ....................... ok
t/Annotation/AnnotationAdaptor.t ....... ok
t/Annotation/Annotation.t .............. ok
t/Assembly/IO/bowtie.t ................. skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
Possible precedence issue with control flow operator at Bio/DB/IndexedBase.pm line 845, <GEN0> line 20.
t/Assembly/IO/sam.t .................... skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
t/Assembly/ContigSpectrum.t ............ ok
t/Cluster/UniGene.t .................... ok
Possible precedence issue with control flow operator at Bio/DB/IndexedBase.pm line 845.
t/ClusterIO/ClusterIO.t ................ ok
t/ClusterIO/SequenceFamily.t ........... ok
t/ClusterIO/unigene.t .................. ok
t/Draw/Pictogram.t ..................... skipped: The optional module SVG (or dependencies thereof) was not installed
t/LiveSeq/Chain.t ...................... ok
t/LiveSeq/LiveSeq.t .................... ok
t/Assembly/core.t ...................... ok
t/LiveSeq/Mutation.t ................... ok
You are loading a Bio::DB::GFF database with GFF3 formatted data.
While this will likely work fine, the Bio::DB::GFF schema does not
always faithfully capture the complexity represented in GFF3 files.
Unless you have a specific reason for using Bio::DB::GFF, we suggest
that you use a Bio::DB::SeqFeature::Store database and its corresponding
loader, bp_seqfeature_load.pl.
t/LocalDB/BioDBGFF.t ................... ok
Possible precedence issue with control flow operator at Bio/DB/IndexedBase.pm line 845.
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at Bio/DB/IndexedBase.pm line 304.
t/LiveSeq/Mutator.t .................... ok
t/LocalDB/Flat.t ....................... ok
t/LocalDB/Fasta.t ...................... ok
t/LocalDB/Index/Blast.t ................ ok
------------- EXCEPTION -------------
MSG: This index file is from version [1.007002] - You need to rebuild it to use module version [0.2]
STACK Bio::Index::Abstract::_type_and_version Bio/Index/Abstract.pm:493
STACK Bio::Index::Abstract::open_dbm Bio/Index/Abstract.pm:415
STACK Bio::Index::Abstract::new Bio/Index/Abstract.pm:162
STACK Bio::Index::AbstractSeq::new Bio/Index/AbstractSeq.pm:93
STACK toplevel t/LocalDB/Index/Index.t:27
-------------------------------------
# Looks like your test exited with 255 just after 10.
t/LocalDB/Index/Index.t ................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 63/73 subtests
Possible precedence issue with control flow operator at Bio/DB/IndexedBase.pm line 845.
t/LocalDB/Index/BlastTable.t ........... ok
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at Bio/DB/IndexedBase.pm line 304.
t/LocalDB/Qual.t ....................... ok
Possible precedence issue with control flow operator at Bio/DB/IndexedBase.pm line 845.
t/LocalDB/Registry.t ................... ok
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at Bio/DB/IndexedBase.pm line 304.
t/LocalDB/Taxonomy/greengenes.t ........ ok
t/LocalDB/Taxonomy/silva.t ............. ok
t/LocalDB/Taxonomy/sqlite.t ............ skipped: The optional module DBD::SQLite (or dependencies thereof) was not installed
t/LocalDB/SeqFeature.t ................. ok
t/Map/Cyto.t ........................... ok
t/Map/Linkage.t ........................ ok
t/Map/Map.t ............................ ok
t/Map/MapIO.t .......................... ok
t/Map/MicrosatelliteMarker.t ........... ok
t/Map/Physical.t ....................... ok
t/Matrix/IO/masta.t .................... ok
t/Matrix/IO/psm.t ...................... ok
t/Matrix/InstanceSite.t ................ ok
t/Matrix/Matrix.t ...................... ok
t/Matrix/ProtMatrix.t .................. ok
t/Matrix/ProtPsm.t ..................... ok
t/Matrix/SiteMatrix.t .................. ok
t/Ontology/GOterm.t .................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/GraphAdaptor.t .............. skipped: The optional module Graph (or dependencies thereof) was not installed
t/LocalDB/transfac_pro.t ............... ok
t/Ontology/IO/go.t ..................... skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/IO/interpro.t ............... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/Ontology/IO/obo.t .................... skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/Ontology.t .................. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/OntologyEngine.t ............ skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/OntologyStore.t ............. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/Relationship.t .............. skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/RelationshipType.t .......... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/Term.t ...................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Phenotype/Correlate.t ................ ok
t/Perl.t ............................... ok
t/Phenotype/MeSH.t ..................... ok
t/Phenotype/Measure.t .................. ok
t/Phenotype/MiniMIMentry.t ............. ok
t/Phenotype/OMIMentryAllelicVariant.t .. ok
t/Phenotype/OMIMentry.t ................ ok
t/Phenotype/OMIMparser.t ............... ok
t/Phenotype/Phenotype.t ................ ok
t/PodSyntax.t .......................... skipped: Test::Pod 1.00 required for testing POD
t/PopGen/HtSNP.t ....................... ok
t/PopGen/Coalescent.t .................. ok
t/PopGen/MK.t .......................... ok
t/PopGen/PopGenSims.t .................. ok
t/PopGen/TagHaplotype.t ................ ok
t/RemoteDB/BioFetch.t .................. skipped: Network tests have not been requested
t/RemoteDB/CUTG.t ...................... ok
t/RemoteDB/EMBL.t ...................... skipped: Network tests have not been requested
t/RemoteDB/EntrezGene.t ................ skipped: The optional module Bio::ASN1::EntrezGene (or dependencies thereof) was not installed
t/PopGen/PopGen.t ...................... ok
t/RemoteDB/GenBank.t ................... skipped: Network tests have not been requested
t/RemoteDB/GenPept.t ................... skipped: Network tests have not been requested
t/RemoteDB/HIV/HIVAnnotProcessor.t ..... ok
t/RemoteDB/HIV/HIV.t ................... ok
t/RemoteDB/HIV/HIVQuery.t .............. skipped: The optional module CGI (or dependencies thereof) was not installed
t/RemoteDB/MeSH.t ...................... skipped: Network tests have not been requested
t/RemoteDB/HIV/HIVQueryHelper.t ........ ok
t/RemoteDB/Query/GenBank.t ............. skipped: Network tests have not been requested
t/RemoteDB/RefSeq.t .................... ok
t/RemoteDB/SeqRead_fail.t .............. skipped: Network tests have not been requested
t/RemoteDB/SeqVersion.t ................ skipped: The optional module HTML::TableExtract (or dependencies thereof) was not installed
t/RemoteDB/Taxonomy.t .................. skipped: The optional module XML::Twig (or dependencies thereof) was not installed
t/RemoteDB/SwissProt.t ................. skipped: Network tests have not been requested
t/Restriction/Analysis.t ............... ok
t/Restriction/Gel.t .................... ok
t/Restriction/IO.t ..................... ok
t/Root/Exception.t ..................... ok
t/Root/HTTPget.t ....................... skipped: Network tests have not been requested
t/Root/IO.t ............................ ok
t/Root/RootI.t ......................... ok
t/Restriction/Analysis-refac.t ......... ok
t/Root/Storable.t ...................... ok
t/Root/RootIO.t ........................ skipped: Network tests have not been requested
t/SearchDist.t ......................... skipped: The optional module Bio::Ext::Align (or dependencies thereof) was not installed
t/Root/Utilities.t ..................... ok
t/SearchIO/SearchIO.t .................. ok
t/SearchIO/CigarString.t ............... ok
t/SearchIO/SimilarityPair.t ............ ok
t/SearchIO/Writer/GbrowseGFF.t ......... ok
t/SearchIO/Writer/HSPTableWriter.t ..... ok
t/SearchIO/Writer/HTMLWriter.t ......... ok
t/SearchIO/Tiling.t .................... ok
t/SearchIO/Writer/HitTableWriter.t ..... ok
t/SearchIO/axt.t ....................... ok
t/SearchIO/Writer/TextWriter.t ......... ok
t/SearchIO/blast_pull.t ................ ok
t/SearchIO/blasttable.t ................ ok
t/SearchIO/cross_match.t ............... ok
t/SearchIO/erpin.t ..................... ok
t/SearchIO/exonerate.t ................. ok
t/SearchIO/blast.t ..................... ok
t/SearchIO/fasta.t ..................... ok
t/SearchIO/gmap_f9.t ................... ok
t/SearchIO/hmmer_pull.t ................ ok
t/SearchIO/hmmer.t ..................... ok
t/SearchIO/infernal.t .................. ok
t/SearchIO/megablast.t ................. ok
t/SearchIO/psl.t ....................... ok
t/SearchIO/rnamotif.t .................. ok
t/SearchIO/sim4.t ...................... ok
t/SearchIO/waba.t ...................... ok
t/SearchIO/wise.t ...................... ok
t/Seq/EncodedSeq.t ..................... ok
t/Seq/DBLink.t ......................... ok
t/Seq/LargeLocatableSeq.t .............. ok
t/Seq/LargePSeq.t ...................... ok
t/Seq/LocatableSeq.t ................... ok
t/Seq/MetaSeq.t ........................ ok
t/Seq/PrimaryQual.t .................... ok
t/Seq/PrimarySeq.t ..................... ok
t/Seq/PrimedSeq.t ...................... ok
t/Seq/Seq.t ............................ ok
t/Seq/Quality.t ........................ ok
t/Seq/SimulatedRead.t .................. ok
t/Seq/WithQuality.t .................... ok
t/SeqEvolution.t ....................... ok
t/SeqFeature/Amplicon.t ................ ok
t/SeqFeature/Clone.t ................... ok
t/SeqFeature/Computation.t ............. ok
t/SeqFeature/Collection.t .............. ok
t/SeqFeature/FeaturePair.t ............. ok
t/SeqFeature/Gene.t .................... ok
t/SeqFeature/Location.t ................ ok
t/SeqFeature/LocationFactory.t ......... ok
t/SeqFeature/Generic.t ................. ok
t/SeqFeature/Primer.t .................. ok
t/SeqFeature/Range.t ................... ok
t/SeqFeature/RangeI.t .................. ok
t/SeqFeature/SeqAnalysisParser.t ....... ok
t/SeqFeature/SubSeq.t .................. ok
t/SeqIO/Handler.t ...................... ok
t/SeqIO/MultiFile.t .................... ok
t/SeqIO/Multiple_fasta.t ............... ok
t/SeqIO/SeqBuilder.t ................... ok
t/SeqIO/SeqIO.t ........................ ok
t/SeqIO/Splicedseq.t ................... ok
t/SeqIO/abi.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/ace.t .......................... ok
t/SeqIO/agave.t ........................ skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/alf.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/asciitree.t .................... ok
t/SeqIO/bsml.t ......................... skipped: The optional module XML::DOM (or dependencies thereof) was not installed
t/SeqIO/bsml_sax.t ..................... skipped: The optional module XML::SAX::Writer (or dependencies thereof) was not installed
t/SeqIO/chadoxml.t ..................... skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/chaos.t ........................ ok
t/SeqIO/chaosxml.t ..................... ok
t/SeqIO/ctf.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/embl.t ......................... ok
t/SeqIO/entrezgene.t ................... skipped: The optional module Bio::ASN1::EntrezGene (or dependencies thereof) was not installed
t/SeqIO/excel.t ........................ skipped: The optional module Spreadsheet::ParseExcel (or dependencies thereof) was not installed
t/SeqIO/exp.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/fasta.t ........................ ok
t/SeqIO/fastq.t ........................ ok
t/SeqIO/flybase_chadoxml.t ............. skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/game.t ......................... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/SeqIO/gbxml.t ........................ ok
t/SeqIO/gcg.t .......................... ok
t/SeqIO/genbank.t ...................... ok
t/SeqIO/interpro.t ..................... skipped: The optional module XML::DOM::XPath (or dependencies thereof) was not installed
t/SeqIO/kegg.t ......................... ok
t/SeqIO/largefasta.t ................... ok
t/SeqIO/lasergene.t .................... ok
t/SeqIO/locuslink.t .................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/SeqIO/mbsout.t ....................... ok
t/SeqIO/metafasta.t .................... ok
t/SeqIO/msout.t ........................ ok
t/SeqIO/nexml.t ........................ skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/SeqIO/phd.t .......................... ok
t/SeqIO/pir.t .......................... ok
t/SeqFeature/Unflattener.t ............. ok
t/SeqIO/pln.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/qual.t ......................... ok
t/SeqIO/raw.t .......................... ok
t/SeqIO/seqxml.t ....................... skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/strider.t ...................... skipped: The optional module Convert::Binary::C (or dependencies thereof) was not installed
t/SeqIO/swiss.t ........................ ok
t/SeqIO/tab.t .......................... ok
t/SeqIO/table.t ........................ skipped: The optional module IO::Scalar (or dependencies thereof) was not installed
t/SeqIO/tigr.t ......................... skipped: The optional module Error (or dependencies thereof) was not installed
t/SeqIO/tigrxml.t ...................... skipped: The optional module XML::SAX::Writer (or dependencies thereof) was not installed
t/SeqIO/tinyseq.t ...................... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/SeqIO/scf.t .......................... ok
t/SeqIO/ztr.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqTools/Backtranslate.t ............. skipped: The optional module List::MoreUtils (or dependencies thereof) was not installed
t/SeqTools/CodonTable.t ................ ok
t/SeqTools/ECnumber.t .................. ok
t/SeqTools/OddCodes.t .................. ok
t/SeqTools/SeqPattern.t ................ ok
t/SeqTools/GuessSeqFormat.t ............ ok
t/SeqTools/SeqStats.t .................. ok
t/SeqTools/SeqUtils.t .................. ok
t/SeqTools/SeqWords.t .................. ok
t/Species.t ............................ ok
t/Structure/IO.t ....................... ok
t/Structure/Structure.t ................ ok
t/Symbol.t ............................. ok
t/TaxonTree.t .......................... skipped: These modules are now probably deprecated
t/Tools/Alignment/Consed.t ............. ok
t/Tools/AmpliconSearch.t ............... ok
t/Tools/Analysis/DNA/ESEfinder.t ....... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/Domcut.t ...... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/ELM.t ......... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/GOR4.t ........ skipped: Network tests have not been requested
t/Tools/Analysis/Protein/HNN.t ......... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/NetPhos.t ..... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/Sopma.t ....... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/Scansite.t .... ok
t/Tools/EMBOSS/Palindrome.t ............ ok
t/Tools/Est2Genome.t ................... ok
t/Tools/FootPrinter.t .................. ok
t/Tools/GFF.t .......................... ok
t/Tools/Geneid.t ....................... ok
t/Tools/Genewise.t ..................... ok
t/Tools/Genomewise.t ................... ok
t/Tools/Genpred.t ...................... ok
t/Tools/IUPAC.t ........................ ok
t/Tools/Lucy.t ......................... ok
t/Tools/Hmmer.t ........................ ok
t/Tools/Match.t ........................ ok
t/Tools/Phylo/Gerp.t ................... ok
t/Tools/Phylo/Molphy.t ................. ok
t/Tools/Phylo/Phylip/ProtDist.t ........ ok
t/Tools/Primer3.t ...................... ok
t/Tools/Promoterwise.t ................. ok
t/Tools/PrositeScan.t .................. ok
t/Tools/Pseudowise.t ................... ok
t/Tools/RandDistFunctions.t ............ ok
t/Tools/QRNA.t ......................... ok
t/Tools/RepeatMasker.t ................. ok
t/Tools/Run/RemoteBlast.t .............. skipped: Network tests have not been requested
t/Tools/Run/RemoteBlast_rpsblast.t ..... skipped: Network tests have not been requested
t/Tools/Seg.t .......................... ok
t/Tools/Sigcleave.t .................... ok
t/Tools/SiRNA.t ........................ ok
t/Tools/Signalp.t ...................... ok
t/Tools/Sim4.t ......................... ok
t/Tools/Signalp/ExtendedSignalp.t ...... ok
t/Tools/Spidey/Spidey.t ................ ok
t/Tools/TandemRepeatsFinder.t .......... ok
t/Tools/Tmhmm.t ........................ ok
t/Tools/TargetP.t ...................... ok
t/Tools/pICalculator.t ................. ok
t/Tools/ePCR.t ......................... ok
t/Tree/Compatible.t .................... skipped: The optional module Set::Scalar (or dependencies thereof) was not installed
t/Tools/tRNAscanSE.t ................... ok
t/Tree/Node.t .......................... ok
t/Tree/PhyloNetwork/Factory.t .......... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/GraphViz.t ......... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/MuVector.t ......... ok
t/Tree/PhyloNetwork/PhyloNetwork.t ..... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/RandomFactory.t .... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/TreeFactory.t ...... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/RandomTreeFactory.t ............. ok
t/Tree/Tree.t .......................... ok
t/Tree/TreeIO/lintree.t ................ ok
t/Tree/TreeIO/newick.t ................. ok
t/Tree/TreeIO.t ........................ ok
t/Tree/TreeIO/nexml.t .................. skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/Tree/TreeIO/nexus.t .................. ok
t/Tree/TreeIO/nhx.t .................... ok
t/Tree/TreeIO/svggraph.t ............... ok
t/Tree/TreeIO/phyloxml.t ............... ok
t/Tree/TreeIO/tabtree.t ................ ok
t/Tree/TreeStatistics.t ................ ok
t/Variation/AAChange.t ................. ok
t/Variation/AAReverseMutate.t .......... ok
t/Variation/Allele.t ................... ok
t/Variation/DNAMutation.t .............. ok
t/Variation/RNAChange.t ................ ok
t/Variation/SNP.t ...................... ok
t/Variation/SeqDiff.t .................. ok
t/Variation/Variation_IO.t ............. skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/nexml.t .............................. skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
Test Summary Report
-------------------
t/LocalDB/Index/Index.t (Wstat: 65280 Tests: 10 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 73 tests but ran 10.
Files=325, Tests=18299, 61 wallclock secs ( 2.78 usr 0.66 sys + 98.20 cusr 10.98 csys = 112.62 CPU)
Result: FAIL
Failed 1/325 test programs. 0/18299 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------ ------ --------
Data::Stag 0.11 0.14
ExtUtils::Manifest 1.52 1.70
IO::String 0 1.08
perl v5.6.1 5.024003
Scalar::Util 0 1.42_02
build_requires:
Module Need Have
------------------ ------ --------
CPAN 1.81 2.11_01
Module::Build 0.42 0.4224
Test::Harness 2.62 3.36_01
Test::Most 0 0.35
URI::Escape 0 3.31
configure_requires:
Module Need Have
------------------ ------ --------
Module::Build 0.42 0.4224
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = j2
LANG = en_US.UTF-8
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/bin:src/njh/smoker/bin:/usr/bin:/bin
PERL5LIB = /home/njh/.cpan/build/Data-Stag-0.14-bQRmRq/blib/arch:/home/njh/.cpan/build/Data-Stag-0.14-bQRmRq/blib/lib:/home/njh/.cpan/build/IO-String-1.08-nXZUem/blib/arch:/home/njh/.cpan/build/IO-String-1.08-nXZUem/blib/lib:/home/njh/.cpan/build/DBI-1.641-nhh45S/blib/arch:/home/njh/.cpan/build/DBI-1.641-nhh45S/blib/lib:/home/njh/.cpan/build/Acme-Pointer-0.03-fRRDwF/blib/arch:/home/njh/.cpan/build/Acme-Pointer-0.03-fRRDwF/blib/lib:/home/njh/.cpan/build/Test-LeakTrace-0.16-MznOoa/blib/arch:/home/njh/.cpan/build/Test-LeakTrace-0.16-MznOoa/blib/lib:/home/njh/.cpan/build/Module-Build-Tiny-0.039-42tc1X/blib/arch:/home/njh/.cpan/build/Module-Build-Tiny-0.039-42tc1X/blib/lib:/home/njh/.cpan/build/ExtUtils-InstallPaths-0.011-667noh/blib/arch:/home/njh/.cpan/build/ExtUtils-InstallPaths-0.011-667noh/blib/lib:/home/njh/.cpan/build/ExtUtils-Config-0.008-pV0NYz/blib/arch:/home/njh/.cpan/build/ExtUtils-Config-0.008-pV0NYz/blib/lib:/home/njh/.cpan/build/ExtUtils-Helpers-0.026-tUrBpB/blib/arch:/home/njh/.cpan/build/ExtUtils-Helpers-0.026-tUrBpB/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 8494
PERL5_CPAN_IS_RUNNING = 8494
PERLBREW_HOME = /home/njh/.perlbrew
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/bin
PERLBREW_PERL = perl-5.24.3-multi
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.82
PERLBREW_VERSION = 0.82
SHELL = /bin/sh
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/bin/perl5.24.3
$UID/$EUID = 1000 / 1000
$GID = 1000 4 24 25 29 30 44 46 103 108 115 123 1000
$EGID = 1000 4 24 25 29 30 44 46 103 108 115 123 1000
Perl module toolchain versions installed:
Module Have
------------------- ----------
CPAN 2.11_01
CPAN::Meta 2.150005
Cwd 3.63_01
ExtUtils::CBuilder 0.280225
ExtUtils::Command 7.30
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.31
File::Spec 3.63_01
JSON n/a
JSON::PP 2.27300_01
Module::Build 0.4224
Module::Signature n/a
Parse::CPAN::Meta 1.4417_001
Test::Harness 3.36_01
Test::More 1.302106
YAML n/a
YAML::Syck n/a
version 0.9916
--
Summary of my perl5 (revision 5 version 24 subversion 3) configuration:
Platform:
osname=linux, osvers=4.9.0-3-amd64, archname=x86_64-linux-multi
uname='linux amelia 4.9.0-3-amd64 #1 smp debian 4.9.25-1 (2017-05-02) x86_64 gnulinux '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi -Dusedevel -Dusemultiplicity -Accflags= -Aeval:scriptdir=/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=define
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
optimize='-O2',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='7.2.0', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /lib64 /usr/lib64
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_COPY_ON_WRITE PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_USE_DEVEL USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Oct 5 2017 00:58:31
%ENV:
PERL5LIB="/home/njh/.cpan/build/Data-Stag-0.14-bQRmRq/blib/arch:/home/njh/.cpan/build/Data-Stag-0.14-bQRmRq/blib/lib:/home/njh/.cpan/build/IO-String-1.08-nXZUem/blib/arch:/home/njh/.cpan/build/IO-String-1.08-nXZUem/blib/lib:/home/njh/.cpan/build/DBI-1.641-nhh45S/blib/arch:/home/njh/.cpan/build/DBI-1.641-nhh45S/blib/lib:/home/njh/.cpan/build/Acme-Pointer-0.03-fRRDwF/blib/arch:/home/njh/.cpan/build/Acme-Pointer-0.03-fRRDwF/blib/lib:/home/njh/.cpan/build/Test-LeakTrace-0.16-MznOoa/blib/arch:/home/njh/.cpan/build/Test-LeakTrace-0.16-MznOoa/blib/lib:/home/njh/.cpan/build/Module-Build-Tiny-0.039-42tc1X/blib/arch:/home/njh/.cpan/build/Module-Build-Tiny-0.039-42tc1X/blib/lib:/home/njh/.cpan/build/ExtUtils-InstallPaths-0.011-667noh/blib/arch:/home/njh/.cpan/build/ExtUtils-InstallPaths-0.011-667noh/blib/lib:/home/njh/.cpan/build/ExtUtils-Config-0.008-pV0NYz/blib/arch:/home/njh/.cpan/build/ExtUtils-Config-0.008-pV0NYz/blib/lib:/home/njh/.cpan/build/ExtUtils-Helpers-0.026-tUrBpB/blib/arch:/home/njh/.cpan/build/ExtUtils-Helpers-0.026-tUrBpB/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="8494"
PERL5_CPAN_IS_RUNNING="8494"
PERLBREW_HOME="/home/njh/.perlbrew"
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/bin"
PERLBREW_PERL="perl-5.24.3-multi"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.82"
PERLBREW_VERSION="0.82"
@INC:
/home/njh/.cpan/build/Data-Stag-0.14-bQRmRq/blib/arch
/home/njh/.cpan/build/Data-Stag-0.14-bQRmRq/blib/lib
/home/njh/.cpan/build/IO-String-1.08-nXZUem/blib/arch
/home/njh/.cpan/build/IO-String-1.08-nXZUem/blib/lib
/home/njh/.cpan/build/DBI-1.641-nhh45S/blib/arch
/home/njh/.cpan/build/DBI-1.641-nhh45S/blib/lib
/home/njh/.cpan/build/Acme-Pointer-0.03-fRRDwF/blib/arch
/home/njh/.cpan/build/Acme-Pointer-0.03-fRRDwF/blib/lib
/home/njh/.cpan/build/Test-LeakTrace-0.16-MznOoa/blib/arch
/home/njh/.cpan/build/Test-LeakTrace-0.16-MznOoa/blib/lib
/home/njh/.cpan/build/Module-Build-Tiny-0.039-42tc1X/blib/arch
/home/njh/.cpan/build/Module-Build-Tiny-0.039-42tc1X/blib/lib
/home/njh/.cpan/build/ExtUtils-InstallPaths-0.011-667noh/blib/arch
/home/njh/.cpan/build/ExtUtils-InstallPaths-0.011-667noh/blib/lib
/home/njh/.cpan/build/ExtUtils-Config-0.008-pV0NYz/blib/arch
/home/njh/.cpan/build/ExtUtils-Config-0.008-pV0NYz/blib/lib
/home/njh/.cpan/build/ExtUtils-Helpers-0.026-tUrBpB/blib/arch
/home/njh/.cpan/build/ExtUtils-Helpers-0.026-tUrBpB/blib/lib
/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/lib/site_perl/5.24.3/x86_64-linux-multi
/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/lib/site_perl/5.24.3
/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/lib/5.24.3/x86_64-linux-multi
/home/njh/perl5/perlbrew/perls/perl-5.24.3-multi/lib/5.24.3
.