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From: metabase:user:0d96120c-29e2-11e5-b049-ede3035d37de
Subject: FAIL BioPerl-Run-1.006900 v5.18.4 GNU/Linux
Date: 2015-07-23T14:32:33Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for BioPerl-Run-1.006900
on perl 5.18.4, created by CPAN-Reporter-1.2014.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Required executable for Bio::Tools::Run::Alignment::Amap is not present
t/Amap.t ...................... ok
t/AnalysisFactory_soap.t ...... skipped: Network tests have not been requested
t/Analysis_soap.t ............. skipped: Network tests have not been requested
t/BEDTools.t .................. skipped: The optional module Bio::Tools::Run::BEDTools (or dependencies thereof) was not installed
------------- EXCEPTION -------------
MSG: Bio::Assembly::IO::sam requires installation of samtools (libbam) and Bio::DB::Sam (available on CPAN; not part of BioPerl)
STACK Bio::Assembly::IO::sam::BEGIN /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Assembly/IO/sam.pm:189
STACK (eval) /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Assembly/IO/sam.pm:195
STACK (eval) /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Assembly/IO/sam.pm:195
STACK main::BEGIN t/BWA.t:21
STACK (eval) /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Assembly/IO/sam.pm:195
STACK toplevel /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Assembly/IO/sam.pm:195
-------------------------------------
BEGIN failed--compilation aborted at /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Assembly/IO/sam.pm line 195.
Compilation failed in require at t/BWA.t line 21.
BEGIN failed--compilation aborted at t/BWA.t line 21.
# Looks like your test exited with 2 before it could output anything.
t/BWA.t .......................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 36/36 subtests
------------- EXCEPTION -------------
MSG: Cannot find executable for blat. path="blat"
STACK Bio::Tools::Run::WrapperBase::executable /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Tools/Run/WrapperBase.pm:340
STACK toplevel t/Blat.t:23
-------------------------------------
# Looks like you planned 33 tests but ran 4.
# Looks like your test exited with 2 just after 4.
t/Blat.t ......................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 29/33 subtests
1024
# Failed test 'translate params'
# at t/Bowtie.t line 111.
# got: '-v 4 -S -y --solexa-quals'
# expected: '-v 4 --solexa-quals -y -S'
# Required executable for Bio::Tools::Run::Bowtie is not present
# Looks like you failed 1 test of 73.
t/Bowtie.t ....................
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/73 subtests
(less 40 skipped subtests: 32 okay)
# Required executable for Bio::Tools::Run::Cap3 is not present
t/Cap3.t ...................... ok
# Required executable for Bio::Tools::Run::Alignment::Clustalw is not present
t/Clustalw.t .................. ok
# Required executable for Bio::Tools::Run::Coil is not present
t/Coil.t ...................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::Consense is not present
t/Consense.t .................. ok
# Required executable for Bio::Tools::Run::Alignment::DBA is not present
t/DBA.t ....................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::DrawGram is not present
t/DrawGram.t .................. ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::DrawTree is not present
t/DrawTree.t .................. ok
t/EMBOSS.t .................... skipped: The optional module XML::Twig (or dependencies thereof) was not installed
t/Ensembl.t ................... skipped: Network tests have not been requested
# Looks like you planned 7 tests but ran 2.
t/Eponine.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/7 subtests
# Required executable for Bio::Tools::Run::Alignment::Exonerate is not present
t/Exonerate.t ................. ok
# Required executable for Bio::Tools::Run::FootPrinter is not present
t/FootPrinter.t ............... ok
# Required environment variable $GENEMARK_MODELS is not set
t/Genemark.hmm.prokaryotic.t .. ok
# Required executable for Bio::Tools::Run::Genewise is not present
t/Genewise.t .................. ok
# Required environment variable $GENSCANDIR is not set
t/Genscan.t ................... ok
# Required executable for Bio::Tools::Run::Phylo::Gerp is not present
t/Gerp.t ...................... ok
# Required executable for Bio::Tools::Run::Glimmer is not present
t/Glimmer2.t .................. ok
# Required executable for Bio::Tools::Run::Glimmer is not present
t/Glimmer3.t .................. ok
# Failed test 'use Bio::Tools::Run::Phylo::Gumby;'
# at t/Gumby.t line 10.
# Tried to use 'Bio::Tools::Run::Phylo::Gumby'.
# Error: Can't locate Bio/SeqFeature/Annotated.pm in @INC (you may need to install the Bio::SeqFeature::Annotated module) (@INC contains: /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4 .) at /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Tools/Phylo/Gumby.pm line 83.
# BEGIN failed--compilation aborted at /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Tools/Phylo/Gumby.pm line 83.
# Compilation failed in require at /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/Phylo/Gumby.pm line 143.
# BEGIN failed--compilation aborted at /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/Phylo/Gumby.pm line 143.
# Compilation failed in require at t/Gumby.t line 10.
# BEGIN failed--compilation aborted at t/Gumby.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Gumby" at t/Gumby.t line 25.
# Looks like you planned 124 tests but ran 8.
# Looks like you failed 1 test of 8 run.
# Looks like your test exited with 255 just after 8.
t/Gumby.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 117/124 subtests
# Required executable for Bio::Tools::Run::Hmmer is not present
t/Hmmer.t ..................... ok
# Required executable for Bio::Tools::Run::Phylo::Hyphy::SLAC is not present
t/Hyphy.t ..................... ok
# Required executable for Bio::Tools::Run::Infernal is not present
t/Infernal.t .................. ok
# Required executable for Bio::Tools::Run::Alignment::Kalign is not present
t/Kalign.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::LVB is not present
t/LVB.t ....................... ok
# Required executable for Bio::Tools::Run::Alignment::Lagan is not present
t/Lagan.t ..................... ok
# Required executable for Bio::Tools::Run::Alignment::MAFFT is not present
t/MAFFT.t ..................... ok
# Failed test 'use Bio::Tools::Run::MCS;'
# at t/MCS.t line 8.
# Tried to use 'Bio::Tools::Run::MCS'.
# Error: Can't locate Bio/FeatureIO.pm in @INC (you may need to install the Bio::FeatureIO module) (@INC contains: /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4 .) at /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/MCS.pm line 132.
# BEGIN failed--compilation aborted at /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/MCS.pm line 132.
# Compilation failed in require at t/MCS.t line 8.
# BEGIN failed--compilation aborted at t/MCS.t line 8.
# Failed test 'use Bio::SeqFeature::Annotated;'
# at t/MCS.t line 9.
# Tried to use 'Bio::SeqFeature::Annotated'.
# Error: Can't locate Bio/SeqFeature/Annotated.pm in @INC (you may need to install the Bio::SeqFeature::Annotated module) (@INC contains: /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4 .) at t/MCS.t line 9.
# BEGIN failed--compilation aborted at t/MCS.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::MCS" at t/MCS.t line 17.
# Looks like you planned 24 tests but ran 4.
# Looks like you failed 2 tests of 4 run.
# Looks like your test exited with 255 just after 4.
t/MCS.t .......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 22/24 subtests
# Failed test 'parameter really reset via arg'
# at t/Maq.t line 41.
# got: undef
# expected: '0.05'
# Required executable for Bio::Tools::Run::Maq is not present
# Looks like you failed 1 test of 51.
t/Maq.t .......................
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/51 subtests
(less 27 skipped subtests: 23 okay)
# Failed test 'use Bio::Tools::Run::Match;'
# at t/Match.t line 9.
# Tried to use 'Bio::Tools::Run::Match'.
# Error: Can't locate Bio/FeatureIO.pm in @INC (you may need to install the Bio::FeatureIO module) (@INC contains: /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4 .) at /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/Match.pm line 117.
# BEGIN failed--compilation aborted at /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/Match.pm line 117.
# Compilation failed in require at t/Match.t line 9.
# BEGIN failed--compilation aborted at t/Match.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Match" at t/Match.t line 16.
# Looks like you planned 7 tests but ran 1.
# Looks like you failed 1 test of 1 run.
# Looks like your test exited with 255 just after 1.
t/Match.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/7 subtests
# Required executable for Bio::Tools::Run::Mdust is not present
t/Mdust.t ..................... ok
# Required executable for Bio::Tools::Run::Meme is not present
t/Meme.t ...................... ok
# Required executable for Bio::Tools::Run::Minimo is not present
t/Minimo.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::Molphy::ProtML is not present
t/Molphy.t .................... ok
# Required executable for Bio::Tools::Run::Alignment::Muscle is not present
t/Muscle.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::Neighbor is not present
t/Neighbor.t .................. ok
# Required executable for Bio::Tools::Run::Newbler is not present
t/Newbler.t ................... ok
# Required executable for Bio::Tools::Run::Phylo::Njtree::Best is not present
t/Njtree.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::PAML::Codeml is not present
t/PAML.t ...................... ok
# Required executable for Bio::Tools::Run::Alignment::Pal2Nal is not present
t/Pal2Nal.t ................... ok
# Failed test 'use Bio::Tools::Run::Phylo::Phast::PhastCons;'
# at t/PhastCons.t line 10.
# Tried to use 'Bio::Tools::Run::Phylo::Phast::PhastCons'.
# Error: Can't locate Bio/FeatureIO.pm in @INC (you may need to install the Bio::FeatureIO module) (@INC contains: /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch /home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch /home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch /home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch /home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch /home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch /home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch /home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch /home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch /home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch /home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch /home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch /home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch /home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch /home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib /home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld /home/perltest/sysperl/lib/perl5 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4 /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4/x86_64-linux-thread-multi-ld /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4 .) at /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm line 140.
# BEGIN failed--compilation aborted at /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm line 140.
# Compilation failed in require at t/PhastCons.t line 10.
# BEGIN failed--compilation aborted at t/PhastCons.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Phast::PhastCons" at t/PhastCons.t line 23.
# Looks like you planned 181 tests but ran 6.
# Looks like you failed 1 test of 6 run.
# Looks like your test exited with 255 just after 6.
t/PhastCons.t .................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 176/181 subtests
# Required executable for Bio::Tools::Run::Phrap is not present
t/Phrap.t ..................... ok
------------- EXCEPTION -------------
MSG: Cannot find executable for phyml. path="phyml"
STACK Bio::Tools::Run::WrapperBase::executable /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Tools/Run/WrapperBase.pm:340
STACK Bio::Tools::Run::Phylo::Phyml::version /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/Phylo/Phyml.pm:301
STACK Bio::Tools::Run::Phylo::Phyml::model /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/Phylo/Phyml.pm:479
STACK toplevel t/Phyml.t:31
-------------------------------------
# Looks like you planned 47 tests but ran 11.
# Looks like your test exited with 2 just after 11.
t/Phyml.t .....................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 36/47 subtests
# Required executable for Bio::Tools::Run::Primate is not present
t/Primate.t ................... ok
# Required executable for Bio::Tools::Run::Primer3 is not present
t/Primer3.t ................... ok
# Required executable for Bio::Tools::Run::Prints is not present
t/Prints.t .................... ok
# Required executable for Bio::Tools::Run::Alignment::Probalign is not present
t/Probalign.t ................. ok
# Required executable for Bio::Tools::Run::Alignment::Probcons is not present
t/Probcons.t .................. ok
# Required executable for Bio::Tools::Run::Profile is not present
t/Profile.t ................... ok
# Required executable for Bio::Tools::Run::Promoterwise is not present
t/Promoterwise.t .............. ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::ProtDist is not present
t/ProtDist.t .................. ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::ProtPars is not present
t/ProtPars.t .................. ok
# Required executable for Bio::Tools::Run::Pseudowise is not present
t/Pseudowise.t ................ ok
# Required executable for Bio::Tools::Run::Phylo::QuickTree is not present
t/QuickTree.t ................. ok
------------- EXCEPTION -------------
MSG: Cannot find executable for RepeatMasker. path="RepeatMasker"
STACK Bio::Tools::Run::WrapperBase::executable /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Tools/Run/WrapperBase.pm:340
STACK Bio::Tools::Run::RepeatMasker::new /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/RepeatMasker.pm:207
STACK toplevel t/RepeatMasker.t:18
-------------------------------------
# Looks like you planned 12 tests but ran 2.
# Looks like your test exited with 2 just after 2.
t/RepeatMasker.t ..............
Dubious, test returned 2 (wstat 512, 0x200)
Failed 10/12 subtests
# Required executable for Bio::Tools::Run::BlastPlus is not present
# Looks like you planned 65 tests but ran 63.
t/SABlastPlus.t ...............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 2/65 subtests
(less 59 skipped subtests: 4 okay)
# Required executable for Bio::Tools::Run::Phylo::SLR is not present
t/SLR.t ....................... ok
------------- EXCEPTION -------------
MSG: Can't find executable for 'samtools'; can't continue
STACK Bio::Tools::Run::WrapperBase::_run /home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm:974
STACK Bio::Tools::Run::Samtools::run /data/.cpan/build/BioPerl-Run-1.006900-Uk5z_k/blib/lib/Bio/Tools/Run/Samtools.pm:176
STACK toplevel t/Samtools.t:71
-------------------------------------
# Looks like you planned 40 tests but ran 24.
# Looks like your test exited with 2 just after 24.
t/Samtools.t ..................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 16/40 subtests
# Required executable for Bio::Tools::Run::Seg is not present
t/Seg.t ....................... ok
# Required executable for Bio::Tools::Run::Phylo::Semphy is not present
t/Semphy.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::SeqBoot is not present
t/SeqBoot.t ................... ok
# Required executable for Bio::Tools::Run::Signalp is not present
t/Signalp.t ................... ok
# Required executable for Bio::Tools::Run::Alignment::Sim4 is not present
t/Sim4.t ...................... ok
# Required executable for Bio::Tools::Run::Simprot is not present
t/Simprot.t ................... ok
t/SoapEU-function.t ........... skipped: The optional module Bio::DB::ESoap (or dependencies thereof) was not installed
t/SoapEU-unit.t ............... skipped: The optional module Bio::DB::ESoap (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Alignment::StandAloneFasta is not present
t/StandAloneFasta.t ........... ok
# Required executable for Bio::Tools::Run::Alignment::TCoffee is not present
t/TCoffee.t ................... ok
# Required executable for Bio::Tools::Run::TigrAssembler is not present
# Required executable for Bio::Tools::Run::TigrAssembler is not present
t/TigrAssembler.t ............. ok
# Required executable for Bio::Tools::Run::Tmhmm is not present
t/Tmhmm.t ..................... ok
t/TribeMCL.t .................. ok
t/Vista.t ..................... ok
# Required executable for Bio::Tools::Run::Alignment::Gmap is not present
t/gmap-run.t .................. ok
# Required executable for Bio::Tools::Run::tRNAscanSE is not present
t/tRNAscanSE.t ................ ok
Test Summary Report
-------------------
t/BWA.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 36 tests but ran 0.
t/Blat.t (Wstat: 512 Tests: 4 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 33 tests but ran 4.
t/Bowtie.t (Wstat: 256 Tests: 73 Failed: 1)
Failed test: 33
Non-zero exit status: 1
t/Eponine.t (Wstat: 65280 Tests: 2 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 2.
t/Gumby.t (Wstat: 65280 Tests: 8 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 124 tests but ran 8.
t/MCS.t (Wstat: 65280 Tests: 4 Failed: 2)
Failed tests: 1-2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 24 tests but ran 4.
t/Maq.t (Wstat: 256 Tests: 51 Failed: 1)
Failed test: 14
Non-zero exit status: 1
t/Match.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 1.
t/PhastCons.t (Wstat: 65280 Tests: 6 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 181 tests but ran 6.
t/Phyml.t (Wstat: 512 Tests: 11 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 47 tests but ran 11.
t/RepeatMasker.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 12 tests but ran 2.
t/SABlastPlus.t (Wstat: 65280 Tests: 63 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 65 tests but ran 63.
t/Samtools.t (Wstat: 512 Tests: 24 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 40 tests but ran 24.
Files=80, Tests=1990, 8 wallclock secs ( 0.31 usr 0.06 sys + 6.58 cusr 1.36 csys = 8.31 CPU)
Result: FAIL
Failed 13/80 test programs. 7/1990 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------ -------- --------
Bio::Root::Version 1.006900 1.006924
perl v5.6.1 5.018004
configure_requires:
Module Need Have
------------------ -------- --------
Module::Build 0.38 0.4214
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
NONINTERACTIVE_TESTING = 1
PATH = /home/perltest/sysperl/bin:/home/perltest/perl5/perlbrew/bin:/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/bin:/home/perltest/perltest/bin:/home/perltest/perl5/perlbrew/bin:/home/perltest/perl5/perlbrew/perls/perl-5.18.4-ld/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/perltest/perltest/bin
PERL5LIB = /home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch:/home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib:/home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch:/home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib:/home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch:/home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib:/home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch:/home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib:/home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch:/home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib:/home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch:/home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib:/home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch:/home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib:/home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch:/home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib:/home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch:/home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib:/home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch:/home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib:/home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch:/home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib:/home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch:/home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib:/home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch:/home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib:/home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch:/home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib:/home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch:/home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib:/home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch:/home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib:/home/perltest/sysperl/lib/perl5
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 3918
PERL5_CPAN_IS_RUNNING = 3918
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 2733,3918
PERLBREW_BASHRC_VERSION = 0.73
PERLBREW_HOME = /home/perltest/.perlbrew
PERLBREW_LIB =
PERLBREW_MANPATH = /home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/man
PERLBREW_PATH = /home/perltest/perl5/perlbrew/bin:/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/bin
PERLBREW_PERL = perl-5.18.4-thread-multi-ld
PERLBREW_ROOT = /home/perltest/perl5/perlbrew
PERLBREW_VERSION = 0.73
PERL_CR_SMOKER_CURRENT = Mecom-1.15
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_LOCAL_LIB_ROOT = /home/perltest/sysperl:
PERL_MB_OPT = --install_base "//home/perltest/sysperl"
PERL_MM_OPT = INSTALL_BASE=/home/perltest/sysperl
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /data/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/bin/perl
$UID/$EUID = 2000 / 2000
$GID = 2000 2000
$EGID = 2000 2000
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.00
CPAN::Meta 2.150005
Cwd 3.40
ExtUtils::CBuilder 0.280210
ExtUtils::Command 1.17
ExtUtils::Install 1.59
ExtUtils::MakeMaker 6.66
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.18
File::Spec 3.40
JSON 2.90
JSON::PP 2.27202
Module::Build 0.4214
Module::Signature n/a
Parse::CPAN::Meta 1.4417
Test::Harness 3.35
Test::More 1.001014
YAML 1.15
YAML::Syck n/a
version 0.9912
--
Summary of my perl5 (revision 5 version 18 subversion 4) configuration:
Platform:
osname=linux, osvers=3.19.0-18-generic, archname=x86_64-linux-thread-multi-ld
uname='linux perltest.antelope.net 3.19.0-18-generic #18-ubuntu smp tue may 19 18:31:35 utc 2015 x86_64 x86_64 x86_64 gnulinux '
config_args='-de -Dprefix=/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld -Dusemultiplicity -Duselongdouble -Dusethreads -Aeval:scriptdir=/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='long double', nvsize=16, Off_t='off_t', lseeksize=8
alignbytes=16, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=libc-2.21.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.21'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_SAWAMPERSAND USE_64_BIT_ALL
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LONG_DOUBLE USE_PERLIO
USE_PERL_ATOF USE_REENTRANT_API
Locally applied patches:
Devel::PatchPerl 1.38
Built under linux
Compiled at Jul 19 2015 23:12:48
%ENV:
PERL5LIB="/home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch:/home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib:/home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch:/home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib:/home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch:/home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib:/home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch:/home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib:/home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch:/home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib:/home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch:/home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib:/home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch:/home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib:/home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch:/home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib:/home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch:/home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib:/home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch:/home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib:/home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch:/home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib:/home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch:/home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib:/home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch:/home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib:/home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch:/home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib:/home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch:/home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib:/home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch:/home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib:/home/perltest/sysperl/lib/perl5"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="3918"
PERL5_CPAN_IS_RUNNING="3918"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="2733,3918"
PERLBREW_BASHRC_VERSION="0.73"
PERLBREW_HOME="/home/perltest/.perlbrew"
PERLBREW_LIB=""
PERLBREW_MANPATH="/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/man"
PERLBREW_PATH="/home/perltest/perl5/perlbrew/bin:/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/bin"
PERLBREW_PERL="perl-5.18.4-thread-multi-ld"
PERLBREW_ROOT="/home/perltest/perl5/perlbrew"
PERLBREW_VERSION="0.73"
PERL_CR_SMOKER_CURRENT="Mecom-1.15"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_LOCAL_LIB_ROOT="/home/perltest/sysperl:"
PERL_MB_OPT="--install_base "//home/perltest/sysperl""
PERL_MM_OPT="INSTALL_BASE=/home/perltest/sysperl"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/arch
/home/perltest/.cpan/build/Number-FormatEng-0.01-TVQn1W/blib/lib
/home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/arch
/home/perltest/.cpan/build/IPC-Run-0.94-_GF4Wg/blib/lib
/home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/arch
/home/perltest/.cpan/build/Statistics-Basic-1.6611-F8lqe7/blib/lib
/home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/arch
/home/perltest/.cpan/build/Number-Format-1.75-mXmfC1/blib/lib
/home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/arch
/home/perltest/.cpan/build/Statistics-Zed-0.10-EsYShx/blib/lib
/home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/arch
/home/perltest/.cpan/build/Math-Cephes-0.5304-DGCnal/blib/lib
/home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/arch
/home/perltest/.cpan/build/Statistics-Data-0.09-gW3bn6/blib/lib
/home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/arch
/home/perltest/.cpan/build/Data-Serializer-0.60-LorXzu/blib/lib
/home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/arch
/home/perltest/.cpan/build/Array-Compare-2.11-DxALT1/blib/lib
/home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/arch
/home/perltest/.cpan/build/Text-SimpleTable-2.03-d2Ylvm/blib/lib
/home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/arch
/home/perltest/.cpan/build/String-Util-1.24-uAWTPz/blib/lib
/home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/arch
/home/perltest/.cpan/build/Number-Misc-1.2-JUM9aC/blib/lib
/home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/arch
/home/perltest/.cpan/build/Statistics-Lite-3.61-iqbE8q/blib/lib
/home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/arch
/home/perltest/.cpan/build/BioPerl-1.6.924-Wmc_ci/blib/lib
/home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/arch
/home/perltest/.cpan/build/Data-Stag-0.14-vyL0GS/blib/lib
/home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/arch
/home/perltest/.cpan/build/Test-Most-0.34-d3gRC5/blib/lib
/home/perltest/sysperl/lib/perl5/x86_64-linux-thread-multi-ld
/home/perltest/sysperl/lib/perl5
/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4/x86_64-linux-thread-multi-ld
/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/site_perl/5.18.4
/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4/x86_64-linux-thread-multi-ld
/home/perltest/perl5/perlbrew/perls/perl-5.18.4-thread-multi-ld/lib/5.18.4
.