Bio-SearchIO-blastxml v1.70 Perl 5 v5.16.2 darwin-2level
- Status
- Pass
- From
- Nigel Horne
- Dist
-
Bio-SearchIO-blastxml v1.70
- Platform
- Perl 5 v5.16.2 darwin-2level
- Date
- 2018-01-09 10:06:08
- ID
- b672bfe6-f524-11e7-a8c3-bd0ebbf9c033
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for Bio-SearchIO-blastxml-1.70
on perl 5.16.2, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/sw/bin/make test':
PERL_DL_NONLAZY=1 "/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/SearchIO/*.t
t/author-eol.t ........... skipped: these tests are for testing by the author
t/author-mojibake.t ...... skipped: these tests are for testing by the author
t/author-no-tabs.t ....... skipped: these tests are for testing by the author
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author
t/00-compile.t ........... ok
t/SearchIO/blastxml.t .... ok
All tests successful.
Files=7, Tests=394, 0 wallclock secs ( 0.06 usr 0.01 sys + 0.47 cusr 0.12 csys = 0.66 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------------------------------- ----- --------
base 0 2.18
Bio::Root::Root 0 1.007002
Bio::SearchIO 0 0
Bio::SearchIO::IteratedSearchResultEventBuilder 0 0
IO::File 0 1.16
perl 5.006 5.016002
strict 0 1.07
Time::HiRes 0 1.9726
XML::SAX 0 0.99
XML::SAX::Base 0 1.08
build_requires:
Module Need Have
----------------------------------------------- ----- --------
Bio::Root::Test 0 0
ExtUtils::MakeMaker 0 7.30
File::Spec 0 3.47
IO::Handle 0 1.33
IPC::Open3 0 1.12
lib 0 0.63
Test::More 0 1.302106
warnings 0 1.13
configure_requires:
Module Need Have
----------------------------------------------- ----- --------
ExtUtils::MakeMaker 0 7.30
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = c:j3
LANG = en_US.UTF-8
LC_ALL = POSIX
PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin:/Users/hornenj/bin:/usr/bin:/bin:/usr/X11R6/bin:/sw/bin:src/njh/smoker/bin
PERL5LIB = /Users/hornenj/.cpan/build/BioPerl-1.007002-19/blib/arch:/Users/hornenj/.cpan/build/BioPerl-1.007002-19/blib/lib:/Users/hornenj/.cpan/build/Data-Stag-0.14-19/blib/arch:/Users/hornenj/.cpan/build/Data-Stag-0.14-19/blib/lib:/Users/hornenj/.cpan/build/WordPress-Grep-0.010_004-19/blib/arch:/Users/hornenj/.cpan/build/WordPress-Grep-0.010_004-19/blib/lib:/Users/hornenj/.cpan/build/DBD-mysql-4.043-7/blib/arch:/Users/hornenj/.cpan/build/DBD-mysql-4.043-7/blib/lib:/Users/hornenj/.cpan/build/WebService-Coincheck-0.02-19/blib/arch:/Users/hornenj/.cpan/build/WebService-Coincheck-0.02-19/blib/lib:/Users/hornenj/.cpan/build/WebService-Coincheck-0.01-19/blib/arch:/Users/hornenj/.cpan/build/WebService-Coincheck-0.01-19/blib/lib:/Users/hornenj/.cpan/build/Test-AllModules-0.15-15/blib/arch:/Users/hornenj/.cpan/build/Test-AllModules-0.15-15/blib/lib:/Users/hornenj/.cpan/build/String-CamelCase-0.03-15/blib/arch:/Users/hornenj/.cpan/build/String-CamelCase-0.03-15/blib/lib:/Users/hornenj/.cpan/build/Module-Build-Pluggable-CPANfile-0.05-19/blib/arch:/Users/hornenj/.cpan/build/Module-Build-Pluggable-CPANfile-0.05-19/blib/lib:/Users/hornenj/.cpan/build/Module-Build-Pluggable-0.10-18/blib/arch:/Users/hornenj/.cpan/build/Module-Build-Pluggable-0.10-18/blib/lib:/Users/hornenj/.cpan/build/Class-Accessor-Lite-0.08-18/blib/arch:/Users/hornenj/.cpan/build/Class-Accessor-Lite-0.08-18/blib/lib:/Users/hornenj/.cpan/build/AVLTree-0.0.6-19/blib/arch:/Users/hornenj/.cpan/build/AVLTree-0.0.6-19/blib/lib:/Users/hornenj/.cpan/build/CPAN-Reporter-Smoker-OpenBSD-0.011-19/blib/arch:/Users/hornenj/.cpan/build/CPAN-Reporter-Smoker-OpenBSD-0.011-19/blib/lib:/Users/hornenj/.cpan/build/Term-ProgressBar-2.21-19/blib/arch:/Users/hornenj/.cpan/build/Term-ProgressBar-2.21-19/blib/lib:/Users/hornenj/.cpan/build/Class-MethodMaker-2.24-19/blib/arch:/Users/hornenj/.cpan/build/Class-MethodMaker-2.24-19/blib/lib:/Users/hornenj/.cpan/build/Set-Tiny-0.04-8/blib/arch:/Users/hornenj/.cpan/build/Set-Tiny-0.04-8/blib/lib:/Users/hornenj/.cpan/build/Pod-Usage-1.69-7/blib/arch:/Users/hornenj/.cpan/build/Pod-Usage-1.69-7/blib/lib:/Users/hornenj/.cpan/build/podlators-4.10-8/blib/arch:/Users/hornenj/.cpan/build/podlators-4.10-8/blib/lib:/Users/hornenj/.cpan/build/DBIx-Struct-0.45-19/blib/arch:/Users/hornenj/.cpan/build/DBIx-Struct-0.45-19/blib/lib:/Users/hornenj/.cpan/build/DBIx-Struct-0.44-19/blib/arch:/Users/hornenj/.cpan/build/DBIx-Struct-0.44-19/blib/lib:/Users/hornenj/.cpan/build/DBIx-Struct-0.42-19/blib/arch:/Users/hornenj/.cpan/build/DBIx-Struct-0.42-19/blib/lib:/Users/hornenj/.cpan/build/SQL-Abstract-1.84-19/blib/arch:/Users/hornenj/.cpan/build/SQL-Abstract-1.84-19/blib/lib:/Users/hornenj/.cpan/build/Hash-Merge-0.299-19/blib/arch:/Users/hornenj/.cpan/build/Hash-Merge-0.299-19/blib/lib:/Users/hornenj/.cpan/build/Clone-Choose-0.008-19/blib/arch:/Users/hornenj/.cpan/build/Clone-Choose-0.008-19/blib/lib:/Users/hornenj/.cpan/build/DBIx-Connector-0.56-10/blib/arch:/Users/hornenj/.cpan/build/DBIx-Connector-0.56-10/blib/lib:/Users/hornenj/.cpan/build/Test-MockModule-0.13-10/blib/arch:/Users/hornenj/.cpan/build/Test-MockModule-0.13-10/blib/lib:/Users/hornenj/.cpan/build/SUPER-1.20141117-10/blib/arch:/Users/hornenj/.cpan/build/SUPER-1.20141117-10/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 64826
PERL5_CPAN_IS_RUNNING = 64826
PERLBREW_BASHRC_VERSION = 0.80
PERLBREW_HOME = /Users/hornenj/.perlbrew
PERLBREW_MANPATH = /Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/man
PERLBREW_PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin
PERLBREW_PERL = perl-5.16.2
PERLBREW_ROOT = /Users/hornenj/perl5/perlbrew
PERLBREW_VERSION = 0.80
SHELL = /bin/bash
TERM = xterm-256color
TMPDIR = /var/folders/pz/pd7y1qjs6s3cbk170cw50fjc000c61/T/
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin/perl
$UID/$EUID = 12481 / 12481
$GID = 14 14 5344 37191 527 12 62 204 399 206 37223 241 223
$EGID = 14 14 5344 37191 527 12 62 204 399 206 37223 241 223
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.150005
Cwd 3.47
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.30
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.47
JSON 2.93
JSON::PP 2.27400
Module::Build 0.4214
Module::Signature n/a
Parse::CPAN::Meta 1.4422
Test::Harness 3.36
Test::More 1.302106
YAML 1.24
YAML::Syck 1.30
version 0.9912
--
Summary of my perl5 (revision 5 version 16 subversion 2) configuration:
Platform:
osname=darwin, osvers=12.2.1, archname=darwin-2level
uname='darwin ncbimac2008.ncbi.nlm.nih.gov 12.2.1 darwin kernel version 12.2.1: thu oct 18 12:13:47 pdt 2012; root:xnu-2050.20.9~1release_x86_64 x86_64 '
config_args='-de -Dprefix=/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2'
hint=previous, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector',
optimize='-O3',
cppflags='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector -fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector'
ccversion='', gccversion='4.2.1 Compatible Apple LLVM 4.2 (clang-425.0.24)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='env MACOSX_DEPLOYMENT_TARGET=10.3 cc', ldflags =' -fstack-protector'
libpth=/usr/lib
libs=-ldbm -ldl -lm -lutil -lc
perllibs=-ldl -lm -lutil -lc
libc=, so=dylib, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags=' -bundle -undefined dynamic_lookup -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under darwin
Compiled at Mar 4 2013 16:03:07
%ENV:
PERL5LIB="/Users/hornenj/.cpan/build/BioPerl-1.007002-19/blib/arch:/Users/hornenj/.cpan/build/BioPerl-1.007002-19/blib/lib:/Users/hornenj/.cpan/build/Data-Stag-0.14-19/blib/arch:/Users/hornenj/.cpan/build/Data-Stag-0.14-19/blib/lib:/Users/hornenj/.cpan/build/WordPress-Grep-0.010_004-19/blib/arch:/Users/hornenj/.cpan/build/WordPress-Grep-0.010_004-19/blib/lib:/Users/hornenj/.cpan/build/DBD-mysql-4.043-7/blib/arch:/Users/hornenj/.cpan/build/DBD-mysql-4.043-7/blib/lib:/Users/hornenj/.cpan/build/WebService-Coincheck-0.02-19/blib/arch:/Users/hornenj/.cpan/build/WebService-Coincheck-0.02-19/blib/lib:/Users/hornenj/.cpan/build/WebService-Coincheck-0.01-19/blib/arch:/Users/hornenj/.cpan/build/WebService-Coincheck-0.01-19/blib/lib:/Users/hornenj/.cpan/build/Test-AllModules-0.15-15/blib/arch:/Users/hornenj/.cpan/build/Test-AllModules-0.15-15/blib/lib:/Users/hornenj/.cpan/build/String-CamelCase-0.03-15/blib/arch:/Users/hornenj/.cpan/build/String-CamelCase-0.03-15/blib/lib:/Users/hornenj/.cpan/build/Module-Build-Pluggable-CPANfile-0.05-19/blib/arch:/Users/hornenj/.cpan/build/Module-Build-Pluggable-CPANfile-0.05-19/blib/lib:/Users/hornenj/.cpan/build/Module-Build-Pluggable-0.10-18/blib/arch:/Users/hornenj/.cpan/build/Module-Build-Pluggable-0.10-18/blib/lib:/Users/hornenj/.cpan/build/Class-Accessor-Lite-0.08-18/blib/arch:/Users/hornenj/.cpan/build/Class-Accessor-Lite-0.08-18/blib/lib:/Users/hornenj/.cpan/build/AVLTree-0.0.6-19/blib/arch:/Users/hornenj/.cpan/build/AVLTree-0.0.6-19/blib/lib:/Users/hornenj/.cpan/build/CPAN-Reporter-Smoker-OpenBSD-0.011-19/blib/arch:/Users/hornenj/.cpan/build/CPAN-Reporter-Smoker-OpenBSD-0.011-19/blib/lib:/Users/hornenj/.cpan/build/Term-ProgressBar-2.21-19/blib/arch:/Users/hornenj/.cpan/build/Term-ProgressBar-2.21-19/blib/lib:/Users/hornenj/.cpan/build/Class-MethodMaker-2.24-19/blib/arch:/Users/hornenj/.cpan/build/Class-MethodMaker-2.24-19/blib/lib:/Users/hornenj/.cpan/build/Set-Tiny-0.04-8/blib/arch:/Users/hornenj/.cpan/build/Set-Tiny-0.04-8/blib/lib:/Users/hornenj/.cpan/build/Pod-Usage-1.69-7/blib/arch:/Users/hornenj/.cpan/build/Pod-Usage-1.69-7/blib/lib:/Users/hornenj/.cpan/build/podlators-4.10-8/blib/arch:/Users/hornenj/.cpan/build/podlators-4.10-8/blib/lib:/Users/hornenj/.cpan/build/DBIx-Struct-0.45-19/blib/arch:/Users/hornenj/.cpan/build/DBIx-Struct-0.45-19/blib/lib:/Users/hornenj/.cpan/build/DBIx-Struct-0.44-19/blib/arch:/Users/hornenj/.cpan/build/DBIx-Struct-0.44-19/blib/lib:/Users/hornenj/.cpan/build/DBIx-Struct-0.42-19/blib/arch:/Users/hornenj/.cpan/build/DBIx-Struct-0.42-19/blib/lib:/Users/hornenj/.cpan/build/SQL-Abstract-1.84-19/blib/arch:/Users/hornenj/.cpan/build/SQL-Abstract-1.84-19/blib/lib:/Users/hornenj/.cpan/build/Hash-Merge-0.299-19/blib/arch:/Users/hornenj/.cpan/build/Hash-Merge-0.299-19/blib/lib:/Users/hornenj/.cpan/build/Clone-Choose-0.008-19/blib/arch:/Users/hornenj/.cpan/build/Clone-Choose-0.008-19/blib/lib:/Users/hornenj/.cpan/build/DBIx-Connector-0.56-10/blib/arch:/Users/hornenj/.cpan/build/DBIx-Connector-0.56-10/blib/lib:/Users/hornenj/.cpan/build/Test-MockModule-0.13-10/blib/arch:/Users/hornenj/.cpan/build/Test-MockModule-0.13-10/blib/lib:/Users/hornenj/.cpan/build/SUPER-1.20141117-10/blib/arch:/Users/hornenj/.cpan/build/SUPER-1.20141117-10/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="64826"
PERL5_CPAN_IS_RUNNING="64826"
PERLBREW_BASHRC_VERSION="0.80"
PERLBREW_HOME="/Users/hornenj/.perlbrew"
PERLBREW_MANPATH="/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/man"
PERLBREW_PATH="/Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin"
PERLBREW_PERL="perl-5.16.2"
PERLBREW_ROOT="/Users/hornenj/perl5/perlbrew"
PERLBREW_VERSION="0.80"
@INC:
/Users/hornenj/.cpan/build/BioPerl-1.007002-19/blib/arch
/Users/hornenj/.cpan/build/BioPerl-1.007002-19/blib/lib
/Users/hornenj/.cpan/build/Data-Stag-0.14-19/blib/arch
/Users/hornenj/.cpan/build/Data-Stag-0.14-19/blib/lib
/Users/hornenj/.cpan/build/WordPress-Grep-0.010_004-19/blib/arch
/Users/hornenj/.cpan/build/WordPress-Grep-0.010_004-19/blib/lib
/Users/hornenj/.cpan/build/DBD-mysql-4.043-7/blib/arch
/Users/hornenj/.cpan/build/DBD-mysql-4.043-7/blib/lib
/Users/hornenj/.cpan/build/WebService-Coincheck-0.02-19/blib/arch
/Users/hornenj/.cpan/build/WebService-Coincheck-0.02-19/blib/lib
/Users/hornenj/.cpan/build/WebService-Coincheck-0.01-19/blib/arch
/Users/hornenj/.cpan/build/WebService-Coincheck-0.01-19/blib/lib
/Users/hornenj/.cpan/build/Test-AllModules-0.15-15/blib/arch
/Users/hornenj/.cpan/build/Test-AllModules-0.15-15/blib/lib
/Users/hornenj/.cpan/build/String-CamelCase-0.03-15/blib/arch
/Users/hornenj/.cpan/build/String-CamelCase-0.03-15/blib/lib
/Users/hornenj/.cpan/build/Module-Build-Pluggable-CPANfile-0.05-19/blib/arch
/Users/hornenj/.cpan/build/Module-Build-Pluggable-CPANfile-0.05-19/blib/lib
/Users/hornenj/.cpan/build/Module-Build-Pluggable-0.10-18/blib/arch
/Users/hornenj/.cpan/build/Module-Build-Pluggable-0.10-18/blib/lib
/Users/hornenj/.cpan/build/Class-Accessor-Lite-0.08-18/blib/arch
/Users/hornenj/.cpan/build/Class-Accessor-Lite-0.08-18/blib/lib
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/Users/hornenj/.cpan/build/AVLTree-0.0.6-19/blib/lib
/Users/hornenj/.cpan/build/CPAN-Reporter-Smoker-OpenBSD-0.011-19/blib/arch
/Users/hornenj/.cpan/build/CPAN-Reporter-Smoker-OpenBSD-0.011-19/blib/lib
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/Users/hornenj/.cpan/build/Class-MethodMaker-2.24-19/blib/lib
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/Users/hornenj/.cpan/build/Set-Tiny-0.04-8/blib/lib
/Users/hornenj/.cpan/build/Pod-Usage-1.69-7/blib/arch
/Users/hornenj/.cpan/build/Pod-Usage-1.69-7/blib/lib
/Users/hornenj/.cpan/build/podlators-4.10-8/blib/arch
/Users/hornenj/.cpan/build/podlators-4.10-8/blib/lib
/Users/hornenj/.cpan/build/DBIx-Struct-0.45-19/blib/arch
/Users/hornenj/.cpan/build/DBIx-Struct-0.45-19/blib/lib
/Users/hornenj/.cpan/build/DBIx-Struct-0.44-19/blib/arch
/Users/hornenj/.cpan/build/DBIx-Struct-0.44-19/blib/lib
/Users/hornenj/.cpan/build/DBIx-Struct-0.42-19/blib/arch
/Users/hornenj/.cpan/build/DBIx-Struct-0.42-19/blib/lib
/Users/hornenj/.cpan/build/SQL-Abstract-1.84-19/blib/arch
/Users/hornenj/.cpan/build/SQL-Abstract-1.84-19/blib/lib
/Users/hornenj/.cpan/build/Hash-Merge-0.299-19/blib/arch
/Users/hornenj/.cpan/build/Hash-Merge-0.299-19/blib/lib
/Users/hornenj/.cpan/build/Clone-Choose-0.008-19/blib/arch
/Users/hornenj/.cpan/build/Clone-Choose-0.008-19/blib/lib
/Users/hornenj/.cpan/build/DBIx-Connector-0.56-10/blib/arch
/Users/hornenj/.cpan/build/DBIx-Connector-0.56-10/blib/lib
/Users/hornenj/.cpan/build/Test-MockModule-0.13-10/blib/arch
/Users/hornenj/.cpan/build/Test-MockModule-0.13-10/blib/lib
/Users/hornenj/.cpan/build/SUPER-1.20141117-10/blib/arch
/Users/hornenj/.cpan/build/SUPER-1.20141117-10/blib/lib
/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/site_perl/5.16.2/darwin-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/site_perl/5.16.2
/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/5.16.2/darwin-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/5.16.2
.