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From: metabase:user:322078bc-2aae-11df-837a-5e0a49663a4f
Subject: PASS AlignDB-Codon-1.1.1 v5.18.0 Debian GNU/kFreeBSD
Date: 2016-12-17T03:34:49Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear WANGQ,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9160. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
TEST RESULTS:
Below is the error stack from stage 'make test':
# Testing AlignDB::Codon 1.1.1
t/00.load.t ........ ok
t/01.codontable.t .. ok
t/02.syn.t ......... ok
t/03.bioperl.t ..... ok
t/04.syn_nsy.t ..... ok
t/05.seq.t ......... ok
t/06.start_ter.t ... ok
t/07.convert.t ..... ok
All tests successful.
Files=8, Tests=659, 3 wallclock secs ( 0.08 usr 0.03 sys + 1.38 cusr 1.32 csys = 2.82 CPU)
Result: PASS
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
AlignDB::IntSpan 1.1.1 0
List::MoreUtils 0.416 0
Moose 2.1806 0
Test::More 1.302062 0.88
YAML::Syck 1.29 0
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9160
CPANPLUS::Dist::Build 0.80
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
Module::Build 0.4220
Pod::Parser 1.60
Pod::Simple 3.28
Test2 1.302062
Test::Harness 3.36
Test::More 1.302062
version 0.9917
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 0.98.
Powered by minismokebox version 0.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_GB.UTF-8
LANGUAGE = en_GB:en
NONINTERACTIVE_TESTING = 1
PATH = /home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/jWjVQ22NRo/Moose-2.1806/blib/script:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/WOCi_zv8i6/Package-Stash-0.37/blib/script:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5LIB = :/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/hEhvNgK2gN/ExtUtils-Config-0.008/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/hEhvNgK2gN/ExtUtils-Config-0.008/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/TPjfm9JCK0/ExtUtils-Helpers-0.026/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/TPjfm9JCK0/ExtUtils-Helpers-0.026/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/26dU_qHafE/ExtUtils-InstallPaths-0.011/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/26dU_qHafE/ExtUtils-InstallPaths-0.011/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/MRokMe_GKl/Module-Build-Tiny-0.039/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/MRokMe_GKl/Module-Build-Tiny-0.039/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/niOmtXqd3N/Readonly-2.05/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/niOmtXqd3N/Readonly-2.05/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/VyalRx0m7i/Scalar-Util-Numeric-0.40/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/VyalRx0m7i/Scalar-Util-Numeric-0.40/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/ES7O5ESiOL/AlignDB-IntSpan-1.1.1/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/ES7O5ESiOL/AlignDB-IntSpan-1.1.1/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/HrwLyGrchD/Exporter-Tiny-0.042/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/HrwLyGrchD/Exporter-Tiny-0.042/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/Gt3_gPjO5m/XSLoader-0.24/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/Gt3_gPjO5m/XSLoader-0.24/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/BA7xlE5qcR/List-MoreUtils-0.416/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/BA7xlE5qcR/List-MoreUtils-0.416/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/zSHZy5fg34/Module-Metadata-1.000033/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/zSHZy5fg34/Module-Metadata-1.000033/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/YSNJd3lka6/Test-Deep-1.124/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/YSNJd3lka6/Test-Deep-1.124/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/jfFkleUm8h/CPAN-Meta-Check-0.014/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/jfFkleUm8h/CPAN-Meta-Check-0.014/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/4RtRZF_IiX/Params-Util-1.07/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/4RtRZF_IiX/Params-Util-1.07/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/2olQTmIXD5/Sub-Install-0.928/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/2olQTmIXD5/Sub-Install-0.928/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/F9RC4j9fnw/Data-OptList-0.110/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/F9RC4j9fnw/Data-OptList-0.110/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/3FHKLoS1qJ/Module-Runtime-0.014/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/3FHKLoS1qJ/Module-Runtime-0.014/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/BeT8OW5Lb3/Try-Tiny-0.27/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/BeT8OW5Lb3/Try-Tiny-0.27/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/JpfjOsIT5G/Test-Fatal-0.014/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/JpfjOsIT5G/Test-Fatal-0.014/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/XLKhXqpOI6/Test-Requires-0.10/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/XLKhXqpOI6/Test-Requires-0.10/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/n3NtqMnlXS/Module-Implementation-0.09/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/n3NtqMnlXS/Module-Implementation-0.09/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/RX9ivSHZ5y/Dist-CheckConflicts-0.11/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/RX9ivSHZ5y/Dist-CheckConflicts-0.11/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/DuVP8LwFQr/Package-Stash-XS-0.28/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/DuVP8LwFQr/Package-Stash-XS-0.28/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/WOCi_zv8i6/Package-Stash-0.37/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/WOCi_zv8i6/Package-Stash-0.37/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/4KekGd9YgM/Class-Load-0.23/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/4KekGd9YgM/Class-Load-0.23/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/KhoaVnvp2Q/Class-Load-XS-0.09/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/KhoaVnvp2Q/Class-Load-XS-0.09/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/BvzMpq6zco/Sub-Exporter-Progressive-0.001013/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/BvzMpq6zco/Sub-Exporter-Progressive-0.001013/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/AoIVIfzSHc/Devel-GlobalDestruction-0.14/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/AoIVIfzSHc/Devel-GlobalDestruction-0.14/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/NCEF55l6pQ/MRO-Compat-0.12/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/NCEF55l6pQ/MRO-Compat-0.12/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/24OOtR7qxG/Sub-Identify-0.12/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/24OOtR7qxG/Sub-Identify-0.12/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/9cH3YKMyX2/Devel-OverloadInfo-0.004/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/9cH3YKMyX2/Devel-OverloadInfo-0.004/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/udjSEfJbBA/Devel-StackTrace-2.02/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/udjSEfJbBA/Devel-StackTrace-2.02/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/LsqNQiQeRt/Eval-Closure-0.14/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/LsqNQiQeRt/Eval-Closure-0.14/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/NUoyy8LPUi/Scalar-List-Utils-1.46/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/NUoyy8LPUi/Scalar-List-Utils-1.46/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/vcnnqrr1Au/Module-Runtime-Conflicts-0.003/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/vcnnqrr1Au/Module-Runtime-Conflicts-0.003/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/DnY0Ch0Qg2/Sub-Name-0.21/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/DnY0Ch0Qg2/Sub-Name-0.21/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/H4ovgjkd_7/Test-Warnings-0.026/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/H4ovgjkd_7/Test-Warnings-0.026/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/FIPPEFrikM/Package-DeprecationManager-0.17/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/FIPPEFrikM/Package-DeprecationManager-0.17/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/6i10QtoS1H/Sub-Exporter-0.987/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/6i10QtoS1H/Sub-Exporter-0.987/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/wfPiyHqUxL/File-pushd-1.014/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/wfPiyHqUxL/File-pushd-1.014/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/5_5Dlqdcny/Test-Needs-0.002005/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/5_5Dlqdcny/Test-Needs-0.002005/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/HCEUUib6z5/Devel-Hide-0.0009/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/HCEUUib6z5/Devel-Hide-0.0009/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/Vi3eHftk99/Variable-Magic-0.60/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/Vi3eHftk99/Variable-Magic-0.60/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/jMRRLus1ht/B-Hooks-EndOfScope-0.21/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/jMRRLus1ht/B-Hooks-EndOfScope-0.21/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/f5mezmf2QJ/namespace-clean-0.27/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/f5mezmf2QJ/namespace-clean-0.27/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/pS_fgvi8sz/Test-CleanNamespaces-0.22/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/pS_fgvi8sz/Test-CleanNamespaces-0.22/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/jWjVQ22NRo/Moose-2.1806/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/jWjVQ22NRo/Moose-2.1806/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/GJRZxAPfkA/Devel-Leak-0.03/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/GJRZxAPfkA/Devel-Leak-0.03/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/89yRpnB6qP/YAML-Syck-1.29/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/89yRpnB6qP/YAML-Syck-1.29/blib/arch:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/ofslEtMMSu/AlignDB-Codon-1.1.1/blib/lib:/home/cpan/pit/bare/conf/perl-5.18.0/.cpanplus/5.18.0/build/ofslEtMMSu/AlignDB-Codon-1.1.1/blib/arch
PERL5_CPANPLUS_IS_RUNNING = 30847
PERL5_CPANPLUS_IS_VERSION = 0.9160
PERL5_MINISMOKEBOX = 0.58
PERL5_YACSMOKE_BASE = /home/cpan/pit/bare/conf/perl-5.18.0
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /home/cpan/pit/bare/perl-5.18.0/bin/perl
UID: $< = 1001
EUID: $> = 1001
GID: $( = 1001 1001
EGID: $) = 1001 1001
-------------------------------
--
Summary of my perl5 (revision 5 version 18 subversion 0) configuration:
Platform:
osname=gnukfreebsd, osvers=10.1-0-amd64, archname=x86_64-gnukfreebsd
uname='gnukfreebsd kondor 10.1-0-amd64 #0 wed, 16 mar 2016 23:16:33 +0000 x86_64 amd64 qemu virtual cpu version 2.0.0 gnukfreebsd '
config_args='-des -Dprefix=/home/cpan/pit/bare/perl-5.18.0'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-kfreebsd-gnu /lib/../lib /usr/lib/x86_64-kfreebsd-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -lgdbm -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=/usr/lib/x86_64-kfreebsd-gnu/libc.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_SAWAMPERSAND USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Locally applied patches:
Devel::PatchPerl 1.42
Built under gnukfreebsd
Compiled at May 7 2016 00:46:19
%ENV:
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PERL5_CPANPLUS_IS_RUNNING="30847"
PERL5_CPANPLUS_IS_VERSION="0.9160"
PERL5_MINISMOKEBOX="0.58"
PERL5_YACSMOKE_BASE="/home/cpan/pit/bare/conf/perl-5.18.0"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
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