BioPerl v1.007001 Perl 5 v5.14.4 aarch64-linux-thread-multi
- Status
- Fail
- From
- Nigel Horne
- Dist
-
BioPerl v1.007001
- Platform
- Perl 5 v5.14.4 aarch64-linux-thread-multi
- Date
- 2017-08-24 12:28:44
- ID
- c518163c-88c7-11e7-a04b-5afb6acf792f
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for BioPerl-1.007001
on perl 5.14.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
t/Align/Graphics.t ..................... skipped: The optional module GD (or dependencies thereof) was not installed
t/Align/AlignUtil.t .................... ok
t/Align/AlignStats.t ................... ok
t/Align/TreeBuild.t .................... ok
t/Align/Utilities.t .................... ok
t/Align/SimpleAlign.t .................. ok
t/AlignIO/arp.t ........................ ok
t/AlignIO/bl2seq.t ..................... ok
t/AlignIO/clustalw.t ................... ok
t/AlignIO/AlignIO.t .................... ok
t/AlignIO/emboss.t ..................... ok
t/AlignIO/fasta.t ...................... ok
t/AlignIO/largemultifasta.t ............ ok
t/AlignIO/maf.t ........................ ok
t/AlignIO/mase.t ....................... ok
t/AlignIO/mega.t ....................... ok
t/AlignIO/metafasta.t .................. ok
t/AlignIO/meme.t ....................... ok
t/AlignIO/nexml.t ...................... skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/AlignIO/msf.t ........................ ok
t/AlignIO/pfam.t ....................... ok
t/AlignIO/phylip.t ..................... ok
t/AlignIO/nexus.t ...................... ok
t/AlignIO/prodom.t ..................... ok
t/AlignIO/po.t ......................... ok
t/AlignIO/psi.t ........................ ok
t/AlignIO/selex.t ...................... ok
t/AlignIO/xmfa.t ....................... ok
t/Alphabet.t ........................... ok
t/AlignIO/stockholm.t .................. ok
t/Assembly/ContigSpectrum.t ............ skipped: The optional module DB_File (or dependencies thereof) was not installed
t/Annotation/AnnotationAdaptor.t ....... ok
t/Assembly/IO/bowtie.t ................. skipped: The optional module DB_File (or dependencies thereof) was not installed
t/Annotation/Annotation.t .............. ok
t/Assembly/IO/sam.t .................... skipped: The optional module DB_File (or dependencies thereof) was not installed
t/Assembly/core.t ...................... skipped: The optional module DB_File (or dependencies thereof) was not installed
t/Cluster/UniGene.t .................... ok
t/ClusterIO/ClusterIO.t ................ ok
t/Draw/Pictogram.t ..................... skipped: The optional module SVG (or dependencies thereof) was not installed
t/LiveSeq/Chain.t ...................... ok
t/ClusterIO/unigene.t .................. ok
t/ClusterIO/SequenceFamily.t ........... ok
t/LiveSeq/Mutation.t ................... ok
You are loading a Bio::DB::GFF database with GFF3 formatted data.
While this will likely work fine, the Bio::DB::GFF schema does not
always faithfully capture the complexity represented in GFF3 files.
Unless you have a specific reason for using Bio::DB::GFF, we suggest
that you use a Bio::DB::SeqFeature::Store database and its corresponding
loader, bp_seqfeature_load.pl.
t/LocalDB/Fasta.t ...................... ok
t/LocalDB/BioDBGFF.t ................... ok
t/LocalDB/Flat.t ....................... skipped: The optional module DB_File (or dependencies thereof) was not installed
t/LiveSeq/LiveSeq.t .................... ok
------------- EXCEPTION -------------
MSG: This index file is type [Bio::Index::Blast] - Can't access it with module for [Bio::Index::BlastTable]
STACK Bio::Index::Abstract::_type_and_version Bio/Index/Abstract.pm:495
STACK Bio::Index::Abstract::open_dbm Bio/Index/Abstract.pm:415
STACK Bio::Index::Abstract::new Bio/Index/Abstract.pm:162
STACK Bio::Index::BlastTable::new Bio/Index/BlastTable.pm:141
STACK toplevel t/LocalDB/Index/BlastTable.t:22
-------------------------------------
# Looks like your test exited with 255 just after 3.
t/LocalDB/Index/BlastTable.t ...........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 24/27 subtests
t/LocalDB/Index/Index.t ................ skipped: The optional module DB_File (or dependencies thereof) was not installed
t/LocalDB/Qual.t ....................... ok
t/LocalDB/Index/Blast.t ................ ok
t/LocalDB/SeqFeature.t ................. skipped: The optional module DB_File (or dependencies thereof) was not installed
t/LocalDB/Registry.t ................... ok
t/LocalDB/Taxonomy/greengenes.t ........ ok
t/LocalDB/Taxonomy/sqlite.t ............ skipped: The optional module DB_File (or dependencies thereof) was not installed
t/LocalDB/Taxonomy/silva.t ............. ok
t/LocalDB/transfac_pro.t ............... skipped: The optional module DB_File (or dependencies thereof) was not installed
t/LiveSeq/Mutator.t .................... ok
t/Map/Linkage.t ........................ ok
t/Map/Cyto.t ........................... ok
t/Map/MicrosatelliteMarker.t ........... ok
t/Map/MapIO.t .......................... ok
t/Matrix/IO/masta.t .................... ok
t/Map/Physical.t ....................... ok
t/Matrix/IO/psm.t ...................... ok
t/Matrix/InstanceSite.t ................ ok
t/Map/Map.t ............................ ok
t/Matrix/Matrix.t ...................... ok
t/Matrix/ProtMatrix.t .................. ok
t/Matrix/SiteMatrix.t .................. ok
t/Matrix/ProtPsm.t ..................... ok
t/Ontology/GOterm.t .................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/IO/go.t ..................... skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/IO/interpro.t ............... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/Ontology/GraphAdaptor.t .............. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/OntologyEngine.t ............ skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/IO/obo.t .................... skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/OntologyStore.t ............. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/Ontology.t .................. skipped: The optional module Graph (or dependencies thereof) was not installed
t/Ontology/Relationship.t .............. skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/Term.t ...................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Ontology/RelationshipType.t .......... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Phenotype/Correlate.t ................ ok
t/Phenotype/Measure.t .................. ok
t/Phenotype/MeSH.t ..................... ok
t/Phenotype/MiniMIMentry.t ............. ok
t/Perl.t ............................... ok
t/Phenotype/OMIMentryAllelicVariant.t .. ok
t/PodSyntax.t .......................... skipped: Test::Pod 1.00 required for testing POD
t/Phenotype/OMIMentry.t ................ ok
t/Phenotype/OMIMparser.t ............... ok
t/PopGen/HtSNP.t ....................... ok
t/PopGen/Coalescent.t .................. ok
t/Phenotype/Phenotype.t ................ ok
t/PopGen/PopGenSims.t .................. ok
t/PopGen/TagHaplotype.t ................ ok
t/RemoteDB/BioFetch.t .................. skipped: Network tests have not been requested
t/RemoteDB/CUTG.t ...................... ok
t/RemoteDB/EMBL.t ...................... skipped: Network tests have not been requested
t/RemoteDB/EntrezGene.t ................ skipped: The optional module Bio::ASN1::EntrezGene (or dependencies thereof) was not installed
t/RemoteDB/GenBank.t ................... skipped: Network tests have not been requested
t/RemoteDB/GenPept.t ................... skipped: Network tests have not been requested
t/RemoteDB/HIV/HIV.t ................... skipped: The optional module XML::Simple (or dependencies thereof) was not installed
t/PopGen/MK.t .......................... ok
t/RemoteDB/HIV/HIVAnnotProcessor.t ..... ok
t/RemoteDB/HIV/HIVQueryHelper.t ........ skipped: The optional module XML::Simple (or dependencies thereof) was not installed
t/RemoteDB/HIV/HIVQuery.t .............. skipped: The optional module XML::Simple (or dependencies thereof) was not installed
t/RemoteDB/MeSH.t ...................... skipped: Network tests have not been requested
t/RemoteDB/Query/GenBank.t ............. skipped: Network tests have not been requested
t/RemoteDB/SeqVersion.t ................ skipped: The optional module HTML::TableExtract (or dependencies thereof) was not installed
t/RemoteDB/RefSeq.t .................... ok
t/RemoteDB/SeqRead_fail.t .............. skipped: Network tests have not been requested
t/RemoteDB/Taxonomy.t .................. skipped: The optional module DB_File (or dependencies thereof) was not installed
t/RemoteDB/SwissProt.t ................. skipped: Network tests have not been requested
t/Restriction/Gel.t .................... ok
t/Restriction/IO.t ..................... ok
t/Restriction/Analysis.t ............... ok
t/Root/Exception.t ..................... ok
t/Root/HTTPget.t ....................... skipped: Network tests have not been requested
t/Root/IO.t ............................ ok
t/Root/RootI.t ......................... ok
t/Root/Storable.t ...................... ok
t/Root/RootIO.t ........................ skipped: Network tests have not been requested
t/SearchDist.t ......................... skipped: The optional module Bio::Ext::Align (or dependencies thereof) was not installed
t/Root/Utilities.t ..................... ok
t/SearchIO/SearchIO.t .................. ok
t/PopGen/PopGen.t ...................... ok
t/SearchIO/CigarString.t ............... ok
t/SearchIO/SimilarityPair.t ............ ok
t/SearchIO/Writer/GbrowseGFF.t ......... ok
t/SearchIO/Writer/HSPTableWriter.t ..... ok
t/SearchIO/Writer/HTMLWriter.t ......... ok
t/SearchIO/Writer/HitTableWriter.t ..... ok
t/SearchIO/axt.t ....................... ok
t/SearchIO/Writer/TextWriter.t ......... ok
t/SearchIO/blast_pull.t ................ ok
t/Restriction/Analysis-refac.t ......... ok
t/SearchIO/blasttable.t ................ ok
t/SearchIO/cross_match.t ............... ok
t/SearchIO/exonerate.t ................. ok
t/SearchIO/erpin.t ..................... ok
t/SearchIO/Tiling.t .................... ok
t/SearchIO/fasta.t ..................... ok
t/SearchIO/hmmer_pull.t ................ ok
t/SearchIO/blast.t ..................... ok
t/SearchIO/megablast.t ................. ok
t/SearchIO/infernal.t .................. ok
t/SearchIO/psl.t ....................... ok
t/SearchIO/rnamotif.t .................. ok
t/SearchIO/sim4.t ...................... ok
t/SearchIO/waba.t ...................... ok
t/SearchIO/wise.t ...................... ok
t/Seq/EncodedSeq.t ..................... ok
t/Seq/DBLink.t ......................... ok
t/Seq/LargeLocatableSeq.t .............. ok
t/Seq/LargePSeq.t ...................... ok
t/SearchIO/gmap_f9.t ................... ok
t/Seq/LocatableSeq.t ................... ok
t/Seq/MetaSeq.t ........................ ok
t/Seq/PrimaryQual.t .................... ok
t/Seq/PrimarySeq.t ..................... ok
t/Seq/PrimedSeq.t ...................... ok
t/Seq/SimulatedRead.t .................. ok
t/Seq/WithQuality.t .................... ok
t/Seq/Seq.t ............................ ok
t/Seq/Quality.t ........................ ok
t/SeqEvolution.t ....................... ok
t/SeqFeature/Amplicon.t ................ ok
t/SeqFeature/Clone.t ................... ok
t/SeqFeature/Collection.t .............. skipped: The optional module DB_File (or dependencies thereof) was not installed
t/SeqFeature/Computation.t ............. ok
t/SeqFeature/FeaturePair.t ............. ok
t/SeqFeature/Gene.t .................... ok
t/SearchIO/hmmer.t ..................... ok
t/SeqFeature/Location.t ................ ok
t/SeqFeature/Primer.t .................. ok
t/SeqFeature/LocationFactory.t ......... ok
t/SeqFeature/Range.t ................... ok
t/SeqFeature/RangeI.t .................. ok
t/SeqFeature/SeqAnalysisParser.t ....... ok
t/SeqFeature/SubSeq.t .................. ok
t/SeqIO/MultiFile.t .................... ok
t/SeqFeature/Generic.t ................. ok
t/SeqIO/Multiple_fasta.t ............... ok
t/SeqIO/SeqIO.t ........................ ok
t/SeqIO/SeqBuilder.t ................... ok
t/SeqIO/abi.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/ace.t .......................... ok
t/SeqIO/agave.t ........................ skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/Splicedseq.t ................... ok
t/SeqIO/alf.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/Handler.t ...................... ok
t/SeqIO/bsml.t ......................... skipped: The optional module XML::DOM (or dependencies thereof) was not installed
t/SeqIO/bsml_sax.t ..................... skipped: The optional module XML::SAX (or dependencies thereof) was not installed
t/SeqIO/chadoxml.t ..................... skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/asciitree.t .................... ok
t/SeqIO/ctf.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/chaos.t ........................ ok
t/SeqIO/entrezgene.t ................... skipped: The optional module Bio::ASN1::EntrezGene (or dependencies thereof) was not installed
t/SeqIO/chaosxml.t ..................... ok
t/SeqIO/excel.t ........................ skipped: The optional module Spreadsheet::ParseExcel (or dependencies thereof) was not installed
t/SeqIO/exp.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/embl.t ......................... ok
t/SeqIO/fasta.t ........................ ok
t/SeqIO/flybase_chadoxml.t ............. skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/SeqIO/game.t ......................... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/SeqIO/gbxml.t ........................ skipped: The optional module XML::SAX (or dependencies thereof) was not installed
t/SeqIO/gcg.t .......................... ok
t/SeqIO/interpro.t ..................... skipped: The optional module XML::DOM::XPath (or dependencies thereof) was not installed
t/SeqIO/fastq.t ........................ ok
t/SeqIO/kegg.t ......................... ok
t/SeqIO/largefasta.t ................... ok
t/SeqIO/lasergene.t .................... ok
t/SeqIO/locuslink.t .................... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/SeqIO/mbsout.t ....................... ok
t/SeqIO/metafasta.t .................... ok
t/SeqIO/genbank.t ...................... ok
t/SeqIO/nexml.t ........................ skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/SeqIO/phd.t .......................... ok
t/SeqIO/pir.t .......................... ok
t/SeqIO/msout.t ........................ ok
t/SeqIO/pln.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/qual.t ......................... ok
t/SeqIO/raw.t .......................... ok
t/SeqIO/seqxml.t ....................... skipped: The optional module XML::LibXML (or dependencies thereof) was not installed
t/SeqIO/strider.t ...................... skipped: The optional module Convert::Binary::C (or dependencies thereof) was not installed
t/SeqIO/tab.t .......................... ok
t/SeqIO/table.t ........................ skipped: The optional module IO::Scalar (or dependencies thereof) was not installed
t/SeqIO/tigr.t ......................... skipped: The optional module Error (or dependencies thereof) was not installed
t/SeqIO/swiss.t ........................ ok
t/SeqIO/tigrxml.t ...................... skipped: The optional module XML::SAX (or dependencies thereof) was not installed
t/SeqIO/ztr.t .......................... skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/tinyseq.t ...................... skipped: The optional module XML::Parser::PerlSAX (or dependencies thereof) was not installed
t/SeqTools/Backtranslate.t ............. skipped: The optional module List::MoreUtils (or dependencies thereof) was not installed
t/SeqTools/CodonTable.t ................ ok
t/SeqTools/ECnumber.t .................. ok
t/SeqTools/OddCodes.t .................. ok
t/SeqTools/SeqPattern.t ................ ok
t/SeqTools/GuessSeqFormat.t ............ ok
t/SeqTools/SeqStats.t .................. ok
t/SeqTools/SeqUtils.t .................. ok
t/SeqTools/SeqWords.t .................. ok
t/SeqIO/scf.t .......................... ok
t/Structure/Structure.t ................ ok
t/Species.t ............................ ok
t/Structure/IO.t ....................... ok
t/Symbol.t ............................. ok
t/TaxonTree.t .......................... skipped: These modules are now probably deprecated
t/Tools/Alignment/Consed.t ............. ok
t/Tools/Analysis/DNA/ESEfinder.t ....... skipped: Network tests have not been requested
t/Tools/AmpliconSearch.t ............... ok
t/Tools/Analysis/Protein/Domcut.t ...... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/GOR4.t ........ skipped: Network tests have not been requested
t/Tools/Analysis/Protein/ELM.t ......... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/HNN.t ......... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/NetPhos.t ..... skipped: Network tests have not been requested
t/Tools/Analysis/Protein/Scansite.t .... ok
t/Tools/Analysis/Protein/Sopma.t ....... skipped: Network tests have not been requested
t/Tools/EMBOSS/Palindrome.t ............ ok
t/Tools/FootPrinter.t .................. ok
t/Tools/GFF.t .......................... ok
t/Tools/Est2Genome.t ................... ok
t/Tools/Geneid.t ....................... ok
t/Tools/Genomewise.t ................... ok
t/Tools/Genewise.t ..................... ok
t/Tools/IUPAC.t ........................ ok
t/Tools/Genpred.t ...................... ok
t/Tools/Lucy.t ......................... ok
t/Tools/Match.t ........................ ok
t/Tools/Phylo/Gerp.t ................... ok
t/Tools/Phylo/Molphy.t ................. ok
t/Tools/Phylo/Phylip/ProtDist.t ........ ok
t/Tools/Primer3.t ...................... ok
t/Tools/Hmmer.t ........................ ok
t/Tools/Phylo/PAML.t ................... ok
t/Tools/Promoterwise.t ................. ok
t/Tools/Pseudowise.t ................... ok
t/Tools/RandDistFunctions.t ............ ok
t/Tools/QRNA.t ......................... ok
t/Tools/RepeatMasker.t ................. ok
t/Tools/Seg.t .......................... ok
t/Tools/Run/RemoteBlast_rpsblast.t ..... skipped: Network tests have not been requested
t/Tools/Run/RemoteBlast.t .............. skipped: Network tests have not been requested
t/Tools/Sigcleave.t .................... ok
t/Tools/Signalp.t ...................... ok
t/Tools/Signalp/ExtendedSignalp.t ...... ok
t/Tools/SiRNA.t ........................ ok
t/Tools/Sim4.t ......................... ok
t/Tools/Spidey/Spidey.t ................ ok
t/Tools/TandemRepeatsFinder.t .......... ok
t/Tools/TargetP.t ...................... ok
t/Tools/Tmhmm.t ........................ ok
t/Tools/pICalculator.t ................. ok
t/Tools/ePCR.t ......................... ok
t/Tools/tRNAscanSE.t ................... ok
t/Tree/Compatible.t .................... skipped: The optional module Set::Scalar (or dependencies thereof) was not installed
t/Tree/Node.t .......................... ok
t/Tree/PhyloNetwork/Factory.t .......... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/GraphViz.t ......... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/PhyloNetwork.t ..... skipped: The optional module Graph::Directed (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/MuVector.t ......... ok
t/Tree/PhyloNetwork/RandomFactory.t .... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/PhyloNetwork/TreeFactory.t ...... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed
t/Tree/RandomTreeFactory.t ............. ok
t/Tree/Tree.t .......................... ok
t/Tree/TreeIO/lintree.t ................ ok
t/Tree/TreeIO/nexml.t .................. skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/Tree/TreeIO/newick.t ................. ok
t/Tree/TreeIO.t ........................ ok
t/Tree/TreeIO/phyloxml.t ............... skipped: The optional module XML::LibXML (or dependencies thereof) was not installed
t/Tree/TreeIO/svggraph.t ............... ok
t/Tree/TreeIO/nhx.t .................... ok
t/Tree/TreeIO/nexus.t .................. ok
t/Tree/TreeIO/tabtree.t ................ ok
t/Variation/AAChange.t ................. ok
t/Tree/TreeStatistics.t ................ ok
t/Variation/AAReverseMutate.t .......... ok
t/Variation/Allele.t ................... ok
t/Variation/RNAChange.t ................ ok
t/Variation/DNAMutation.t .............. ok
t/Variation/SNP.t ...................... ok
t/Variation/Variation_IO.t ............. skipped: The optional module XML::Writer (or dependencies thereof) was not installed
t/Variation/SeqDiff.t .................. ok
t/nexml.t .............................. skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/SeqFeature/Unflattener.t ............. ok
Test Summary Report
-------------------
t/LocalDB/Index/BlastTable.t (Wstat: 65280 Tests: 3 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 27 tests but ran 3.
Files=325, Tests=16920, 155 wallclock secs (15.28 usr 2.68 sys + 466.35 cusr 36.14 csys = 520.45 CPU)
Result: FAIL
Failed 1/325 test programs. 0/16920 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------ ------ --------
Data::Stag 0.11 0.14
ExtUtils::Manifest 1.52 1.70
IO::String 0 1.08
perl v5.6.1 5.014004
Scalar::Util 0 1.23
build_requires:
Module Need Have
------------------ ------ --------
CPAN 1.81 2.16
Module::Build 0.42 0.4224
Test::Harness 2.62 3.39
Test::Most 0 0.35
URI::Escape 0 3.31
configure_requires:
Module Need Have
------------------ ------ --------
Module::Build 0.42 0.4224
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = j4
LANG = en_US.UTF-8
LANGUAGE = en_US.UTF-8
LC_ALL = en_US.UTF-8
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.14.4/bin:/home/njh/perl5/perlbrew/bin:/home/njh/src/njh/smoker/bin:/usr/bin:/bin
PERL5LIB = /home/njh/.cpan/build/Test-Most-0.35-89/blib/arch:/home/njh/.cpan/build/Test-Most-0.35-89/blib/lib:/home/njh/.cpan/build/Test-Warn-0.32-217/blib/arch:/home/njh/.cpan/build/Test-Warn-0.32-217/blib/lib:/home/njh/.cpan/build/Carp-1.38-171/blib/arch:/home/njh/.cpan/build/Carp-1.38-171/blib/lib:/home/njh/.cpan/build/Test-Exception-0.43-212/blib/arch:/home/njh/.cpan/build/Test-Exception-0.43-212/blib/lib:/home/njh/.cpan/build/Sub-Uplevel-0.2800-108/blib/arch:/home/njh/.cpan/build/Sub-Uplevel-0.2800-108/blib/lib:/home/njh/.cpan/build/Test-Differences-0.64-102/blib/arch:/home/njh/.cpan/build/Test-Differences-0.64-102/blib/lib:/home/njh/.cpan/build/Test-Deep-1.127-307/blib/arch:/home/njh/.cpan/build/Test-Deep-1.127-307/blib/lib:/home/njh/.cpan/build/Exception-Class-1.43-115/blib/arch:/home/njh/.cpan/build/Exception-Class-1.43-115/blib/lib:/home/njh/.cpan/build/Devel-StackTrace-2.02-210/blib/arch:/home/njh/.cpan/build/Devel-StackTrace-2.02-210/blib/lib:/home/njh/.cpan/build/Class-Data-Inheritable-0.08-113/blib/arch:/home/njh/.cpan/build/Class-Data-Inheritable-0.08-113/blib/lib:/home/njh/.cpan/build/Data-Stag-0.14-34/blib/arch:/home/njh/.cpan/build/Data-Stag-0.14-34/blib/lib:/home/njh/.cpan/build/IO-String-1.08-33/blib/arch:/home/njh/.cpan/build/IO-String-1.08-33/blib/lib:/home/njh/.cpan/build/Module-Build-0.4224-22/blib/arch:/home/njh/.cpan/build/Module-Build-0.4224-22/blib/lib:/home/njh/.cpan/build/Array-Utils-0.5-34/blib/arch:/home/njh/.cpan/build/Array-Utils-0.5-34/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 28373
PERL5_CPAN_IS_RUNNING = 28373
PERLBREW_BASHRC_VERSION = 0.78
PERLBREW_LIB =
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.14.4/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.14.4/bin
PERLBREW_PERL = perl-5.14.4
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_VERSION = 0.78
PERL_LOCAL_LIB_ROOT =
SHELL = /bin/sh
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/njh/perl5/perlbrew/perls/perl-5.14.4/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 1000
$EGID = 1000 1000
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.143240
Cwd 3.36
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.30
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 2.2210
File::Spec 3.33
JSON n/a
JSON::PP 2.94
Module::Build 0.4224
Module::Signature n/a
Parse::CPAN::Meta 1.4414
Test::Harness 3.39
Test::More 1.302086
YAML 1.23
YAML::Syck 1.30
version 0.88
--
Summary of my perl5 (revision 5 version 14 subversion 4) configuration:
Platform:
osname=linux, osvers=4.9.23-std-1, archname=aarch64-linux-thread-multi
uname='linux scaleway 4.9.23-std-1 #1 smp mon apr 24 13:18:14 utc 2017 aarch64 gnulinux '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.14.4 -Duseithreads -Dusemultiplicity -Dusedevel -Accflags=-O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -Aeval:scriptdir=/home/njh/perl5/perlbrew/perls/perl-5.14.4/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fno-strict-aliasing -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/aarch64-linux-gnu /lib/../lib /usr/lib/aarch64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_USE_DEVEL USE_64_BIT_ALL
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_PERLIO USE_PERL_ATOF USE_REENTRANT_API
Locally applied patches:
Devel::PatchPerl 1.48
Built under linux
Compiled at Jun 22 2017 21:10:17
%ENV:
PERL5LIB="/home/njh/.cpan/build/Test-Most-0.35-89/blib/arch:/home/njh/.cpan/build/Test-Most-0.35-89/blib/lib:/home/njh/.cpan/build/Test-Warn-0.32-217/blib/arch:/home/njh/.cpan/build/Test-Warn-0.32-217/blib/lib:/home/njh/.cpan/build/Carp-1.38-171/blib/arch:/home/njh/.cpan/build/Carp-1.38-171/blib/lib:/home/njh/.cpan/build/Test-Exception-0.43-212/blib/arch:/home/njh/.cpan/build/Test-Exception-0.43-212/blib/lib:/home/njh/.cpan/build/Sub-Uplevel-0.2800-108/blib/arch:/home/njh/.cpan/build/Sub-Uplevel-0.2800-108/blib/lib:/home/njh/.cpan/build/Test-Differences-0.64-102/blib/arch:/home/njh/.cpan/build/Test-Differences-0.64-102/blib/lib:/home/njh/.cpan/build/Test-Deep-1.127-307/blib/arch:/home/njh/.cpan/build/Test-Deep-1.127-307/blib/lib:/home/njh/.cpan/build/Exception-Class-1.43-115/blib/arch:/home/njh/.cpan/build/Exception-Class-1.43-115/blib/lib:/home/njh/.cpan/build/Devel-StackTrace-2.02-210/blib/arch:/home/njh/.cpan/build/Devel-StackTrace-2.02-210/blib/lib:/home/njh/.cpan/build/Class-Data-Inheritable-0.08-113/blib/arch:/home/njh/.cpan/build/Class-Data-Inheritable-0.08-113/blib/lib:/home/njh/.cpan/build/Data-Stag-0.14-34/blib/arch:/home/njh/.cpan/build/Data-Stag-0.14-34/blib/lib:/home/njh/.cpan/build/IO-String-1.08-33/blib/arch:/home/njh/.cpan/build/IO-String-1.08-33/blib/lib:/home/njh/.cpan/build/Module-Build-0.4224-22/blib/arch:/home/njh/.cpan/build/Module-Build-0.4224-22/blib/lib:/home/njh/.cpan/build/Array-Utils-0.5-34/blib/arch:/home/njh/.cpan/build/Array-Utils-0.5-34/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="28373"
PERL5_CPAN_IS_RUNNING="28373"
PERLBREW_BASHRC_VERSION="0.78"
PERLBREW_LIB=""
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.14.4/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.14.4/bin"
PERLBREW_PERL="perl-5.14.4"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_VERSION="0.78"
PERL_LOCAL_LIB_ROOT=""
@INC:
/home/njh/.cpan/build/Test-Most-0.35-89/blib/arch
/home/njh/.cpan/build/Test-Most-0.35-89/blib/lib
/home/njh/.cpan/build/Test-Warn-0.32-217/blib/arch
/home/njh/.cpan/build/Test-Warn-0.32-217/blib/lib
/home/njh/.cpan/build/Carp-1.38-171/blib/arch
/home/njh/.cpan/build/Carp-1.38-171/blib/lib
/home/njh/.cpan/build/Test-Exception-0.43-212/blib/arch
/home/njh/.cpan/build/Test-Exception-0.43-212/blib/lib
/home/njh/.cpan/build/Sub-Uplevel-0.2800-108/blib/arch
/home/njh/.cpan/build/Sub-Uplevel-0.2800-108/blib/lib
/home/njh/.cpan/build/Test-Differences-0.64-102/blib/arch
/home/njh/.cpan/build/Test-Differences-0.64-102/blib/lib
/home/njh/.cpan/build/Test-Deep-1.127-307/blib/arch
/home/njh/.cpan/build/Test-Deep-1.127-307/blib/lib
/home/njh/.cpan/build/Exception-Class-1.43-115/blib/arch
/home/njh/.cpan/build/Exception-Class-1.43-115/blib/lib
/home/njh/.cpan/build/Devel-StackTrace-2.02-210/blib/arch
/home/njh/.cpan/build/Devel-StackTrace-2.02-210/blib/lib
/home/njh/.cpan/build/Class-Data-Inheritable-0.08-113/blib/arch
/home/njh/.cpan/build/Class-Data-Inheritable-0.08-113/blib/lib
/home/njh/.cpan/build/Data-Stag-0.14-34/blib/arch
/home/njh/.cpan/build/Data-Stag-0.14-34/blib/lib
/home/njh/.cpan/build/IO-String-1.08-33/blib/arch
/home/njh/.cpan/build/IO-String-1.08-33/blib/lib
/home/njh/.cpan/build/Module-Build-0.4224-22/blib/arch
/home/njh/.cpan/build/Module-Build-0.4224-22/blib/lib
/home/njh/.cpan/build/Array-Utils-0.5-34/blib/arch
/home/njh/.cpan/build/Array-Utils-0.5-34/blib/lib
/home/njh/perl5/perlbrew/perls/perl-5.14.4/lib/site_perl/5.14.4/aarch64-linux-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.14.4/lib/site_perl/5.14.4
/home/njh/perl5/perlbrew/perls/perl-5.14.4/lib/5.14.4/aarch64-linux-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.14.4/lib/5.14.4
.