Hashest v0.5.1 Perl 5 v5.24.4 i386-freebsd
- Status
- Fail
- From
- Chris Williams (BINGOS)
- Dist
-
Hashest v0.5.1
- Platform
- Perl 5 v5.24.4 i386-freebsd
- Date
- 2022-07-06 16:36:36
- ID
- cd4dcecc-fd49-11ec-8f4e-c962458f5e5b
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear LSKATZ,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9914. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
PERL_DL_NONLAZY=1 "/usr/home/cpan/pit/bare/perl-5.24.4/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00_env.t ............... ok
Attempt to reload Scalar/Util.pm aborted.
Compilation failed in require at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/Root/Root.pm line 5.
BEGIN failed--compilation aborted at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/Root/Root.pm line 5.
Compilation failed in require at /usr/local/lib/perl5/5.32/base.pm line 137.
...propagated at /usr/local/lib/perl5/5.32/base.pm line 159.
BEGIN failed--compilation aborted at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/Location/WidestCoordPolicy.pm line 81.
Compilation failed in require at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/Location/Atomic.pm line 80.
BEGIN failed--compilation aborted at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/Location/Atomic.pm line 80.
Compilation failed in require at /usr/local/lib/perl5/5.32/base.pm line 137.
...propagated at /usr/local/lib/perl5/5.32/base.pm line 159.
BEGIN failed--compilation aborted at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/Location/Simple.pm line 88.
Compilation failed in require at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/Factory/FTLocationFactory.pm line 98.
BEGIN failed--compilation aborted at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/Factory/FTLocationFactory.pm line 98.
Compilation failed in require at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/SeqIO.pm line 339.
BEGIN failed--compilation aborted at /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/Bio/SeqIO.pm line 339.
Compilation failed in require at /usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/t/../scripts/hashest-index.pl line 8.
BEGIN failed--compilation aborted at /usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/t/../scripts/hashest-index.pl line 8.
# Failed test 'indexing the senterica scheme'
# at t/01_index.t line 22.
# got: '65280'
# expected: '0'
# Looks like you failed 1 test of 1.
# Failed test 'index'
# at t/01_index.t line 36.
can't open /usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/t/senterica.hashest: No such file or directory at t/01_index.t line 25.
# Looks like your test exited with 255 just after 1.
t/01_index.t .............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 1/1 subtests
# Failed test 'dumping the senterica scheme with senterica.hashest to /usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/t/senterica.hashest.dmp'
# at t/02_dump.t line 24.
# got: '65280'
# expected: '0'
# Looks like you failed 1 test of 1.
# Failed test 'dump'
# at t/02_dump.t line 29.
# Looks like you failed 1 test of 1.
t/02_dump.t ..............
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/1 subtests
# Failed test 'searching the senterica scheme with SRR6881054.shovillSpades.fasta'
# at t/04_search.t line 23.
# got: '65280'
# expected: '0'
Bailout called. Further testing stopped: profile was not correct
t/04_search.t ............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 1/1 subtests
FAILED--Further testing stopped: profile was not correct
*** Error code 255
Stop.
make: stopped in /usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
Bio::SeqIO 1.7.8 0
Data::Dumper 2.160 0
Digest::MD5 2.54 0
File::Basename 2.85 0
Getopt::Long 2.48 0
List::MoreUtils 0.430 0
Storable 3.25 0
Test::More 1.302190 0.47
version 0.9929 0.77
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9914
CPANPLUS::Dist::Build 0.90
Cwd 3.75
ExtUtils::CBuilder 0.280236
ExtUtils::Command 7.64
ExtUtils::Install 2.20
ExtUtils::MakeMaker 7.64
ExtUtils::Manifest 1.73
ExtUtils::ParseXS 3.44
File::Spec 3.75
Module::Build 0.4231
Pod::Parser 1.63
Pod::Simple 3.32
Test2 1.302190
Test::Harness 3.44
Test::More 1.302190
version 0.9929
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 1.08.
Powered by minismokebox version 0.68
CPANPLUS is prefering Build.PL
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/blib/script:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/home/cpan/bin
PERL5LIB = /usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5:/usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/blib/arch
PERL5_CPANPLUS_IS_RUNNING = 41957
PERL5_CPANPLUS_IS_VERSION = 0.9914
PERL5_MINISMOKEBOX = 0.68
PERL5_YACSMOKE_BASE = /usr/home/cpan/pit/bare/conf/perl-5.24.4
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_LOCAL_LIB_ROOT = /usr/home/cpan/pit/jail/uIZavBJPcn
PERL_MB_OPT = --install_base "/usr/home/cpan/pit/jail/uIZavBJPcn"
PERL_MM_OPT = INSTALL_BASE=/usr/home/cpan/pit/jail/uIZavBJPcn
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/local/bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /usr/home/cpan/pit/bare/perl-5.24.4/bin/perl
UID: $< = 1002
EUID: $> = 1002
GID: $( = 1002 1002
EGID: $) = 1002 1002
-------------------------------
--
Summary of my perl5 (revision 5 version 24 subversion 4) configuration:
Platform:
osname=freebsd, osvers=12.3-release, archname=i386-freebsd
uname='freebsd ffyrc 12.3-release freebsd 12.3-release r371126 generic i386 '
config_args='-des -Dprefix=/usr/home/cpan/pit/bare/perl-5.24.4'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include',
optimize='-O2',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='FreeBSD Clang 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2)', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12, longdblkind=3
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-Wl,-E -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib /usr/lib/clang/10.0.1/lib /usr/lib
libs=-lpthread -lgdbm -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -ldl -lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
USE_PERL_ATOF
Locally applied patches:
Devel::PatchPerl 2.08
Built under freebsd
Compiled at Dec 12 2021 03:08:10
%ENV:
PERL5LIB="/usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5:/usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/blib/arch"
PERL5_CPANPLUS_IS_RUNNING="41957"
PERL5_CPANPLUS_IS_VERSION="0.9914"
PERL5_MINISMOKEBOX="0.68"
PERL5_YACSMOKE_BASE="/usr/home/cpan/pit/bare/conf/perl-5.24.4"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_LOCAL_LIB_ROOT="/usr/home/cpan/pit/jail/uIZavBJPcn"
PERL_MB_OPT="--install_base "/usr/home/cpan/pit/jail/uIZavBJPcn""
PERL_MM_OPT="INSTALL_BASE=/usr/home/cpan/pit/jail/uIZavBJPcn"
PERL_MM_USE_DEFAULT="1"
@INC:
/usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/5.24.4/i386-freebsd
/usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/5.24.4
/usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5/i386-freebsd
/usr/home/cpan/pit/jail/uIZavBJPcn/lib/perl5
/usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/blib/lib
/usr/home/cpan/pit/bare/conf/perl-5.24.4/.cpanplus/5.24.4/build/ouFqRxrnqU/Hashest-0.5.1/blib/arch
/usr/home/cpan/pit/bare/perl-5.24.4/lib/site_perl/5.24.4/i386-freebsd
/usr/home/cpan/pit/bare/perl-5.24.4/lib/site_perl/5.24.4
/usr/home/cpan/pit/bare/perl-5.24.4/lib/5.24.4/i386-freebsd
/usr/home/cpan/pit/bare/perl-5.24.4/lib/5.24.4
.