Back
From: metabase:user:320bfe00-2aae-11df-837a-5e0a49663a4f
Subject: FAIL go-perl-0.15 v5.8.1 GNU/Linux
Date: 2016-02-15T17:44:46Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for go-perl-0.15
on perl 5.8.1, created by CPAN-Reporter-1.2015.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/tmp/basesmoker-reloperl-G0fp/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
t/t170chadoxml.t ......... ok
t/t175chadoxml_oborel.t .. ok
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
t/t260oborel_in_chado.t .. ok
compilation error: file GO/xsl/oboxml_to_owl.xsl line 818 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
compilation error: file GO/xsl/oboxml_to_owl.xsl line 863 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.29455.go-with-local-id-mapping.obo-1.xml > TMP.29455.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_owl.xsl", "TMP.29455.go-with-local-id-mapping.obo-1.xml", "TMP.29455.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x16b6490), "./t/data/go-with-local-id-mapping.obo") called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 5 (wstat 1280, 0x500)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t270oborel_in_owl.t (Wstat: 1280 Tests: 0 Failed: 0)
Non-zero exit status: 5
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=136, 5 wallclock secs ( 0.15 usr 0.12 sys + 4.00 cusr 0.50 csys = 4.77 CPU)
Result: FAIL
Failed 1/24 test programs. 0/136 subtests failed.
Makefile:1557: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -----
Data::Dumper 0 2.154
Data::Stag 0.07 0.14
build_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 7.10
configure_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 7.10
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LANGUAGE = en_US:en
PATH = /usr/lib/ccache:/home/sand/bin:/usr/local/bin:/usr/lib/ccache:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 5371
PERL5_CPAN_IS_RUNNING = 5371
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /tmp/basesmoker-reloperl-G0fp/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.12
CPAN::Meta 2.150005
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.10
ExtUtils::Install 1.54
ExtUtils::MakeMaker 7.10
ExtUtils::Manifest 1.65
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON 2.90
JSON::PP 2.27300
Module::Build 0.4216
Module::Signature 0.79
Parse::CPAN::Meta 1.4417
Test::Harness 3.36
Test::More 1.001014
YAML 1.15
YAML::Syck 1.29
version 0.9912
--
Summary of my perl5 (revision 5.0 version 8 subversion 1) configuration:
Platform:
osname=linux, osvers=4.3.0-1-amd64, archname=x86_64-linux-thread-multi
uname='linux k83 4.3.0-1-amd64 #1 smp debian 4.3.3-7 (2016-01-19) x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/perl/perl-5.8.1/13e0 -Dmyhostname=k83 -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dlibswanted=cl pthread socket inet nsl gdbm dbm malloc dl ld sun m crypt sec util c cposix posix ucb BSD gdbm_compat -Duseithreads -Uuselongdouble'
hint=recommended, useposix=true, d_sigaction=define
usethreads=define use5005threads=undef useithreads=define usemultiplicity=define
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -I/usr/local/include'
ccversion='', gccversion='5.3.1 20160121', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lpthread -lnsl -lgdbm -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
libc=libc-2.21.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.21'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-rdynamic'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY USE_ITHREADS USE_64_BIT_INT USE_64_BIT_ALL USE_LARGE_FILES PERL_IMPLICIT_CONTEXT
Locally applied patches:
Devel::PatchPerl 1.40
Built under linux
Compiled at Feb 12 2016 08:07:50
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="5371"
PERL5_CPAN_IS_RUNNING="5371"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/sand/src/perl/repoperls/installed-perls/perl/perl-5.8.1/13e0/lib/5.8.1/x86_64-linux-thread-multi
/home/sand/src/perl/repoperls/installed-perls/perl/perl-5.8.1/13e0/lib/5.8.1
/home/sand/src/perl/repoperls/installed-perls/perl/perl-5.8.1/13e0/lib/site_perl/5.8.1/x86_64-linux-thread-multi
/home/sand/src/perl/repoperls/installed-perls/perl/perl-5.8.1/13e0/lib/site_perl/5.8.1
/home/sand/src/perl/repoperls/installed-perls/perl/perl-5.8.1/13e0/lib/site_perl
.