Bio-MUST-Apps-TwoScalp v0.180160 Perl 5 v5.20.1 amd64-freebsd

Status

Pass

From

Chris Williams (BINGOS)

Dist

Bio-MUST-Apps-TwoScalp v0.180160

Platform

Perl 5 v5.20.1 amd64-freebsd

Date

2018-01-20 09:39:32

ID

d151feae-fdc5-11e7-a1cf-bb670eaac09d

This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--

Dear DBAURAIN,

This is a computer-generated error report created automatically by
CPANPLUS, version 0.9170. Testers personal comments may appear
at the end of this report.


Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

TEST RESULTS:

Below is the error stack from stage 'make test':

PERL_DL_NONLAZY=1 "/usr/home/cpan/pit/bare/perl-5.20.1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/author-critic.t ....... skipped: these tests are for testing by the author
t/author-pod-syntax.t ... skipped: these tests are for testing by the author
t/author-portability.t .. skipped: these tests are for testing by the author
t/two_scalp.t ........... skipped: skipped all two-scalp.pl tests!
Files=4, Tests=0,  8 wallclock secs ( 0.08 usr  0.20 sys +  4.59 cusr  3.46 csys =  8.33 CPU)
Result: NOTESTS


PREREQUISITES:

Here is a list of prerequisites you specified and versions we
managed to load:

	  Module Name                        Have     Want
	  Bio::MUST::Core                0.180190        0
	  Bio::MUST::Core::Ali           0.180190        0
	  Bio::MUST::Core::Constants     0.180190        0
	  Bio::MUST::Core::Seq           0.180190        0
	  Bio::MUST::Core::SeqId         0.180190        0
	  Bio::MUST::Core::SeqMask       0.180190        0
	  Bio::MUST::Core::Utils         0.180190        0
	  Bio::MUST::Drivers::Blast::Database::Temporary 0.173510        0
	  Bio::MUST::Drivers::Blast::Query 0.173510        0
	  ExtUtils::MakeMaker                7.30        0
	  Getopt::Euclid                    0.4.5        0
	  List::AllUtils                     0.14        0
	  Modern::Perl                   1.20170117        0
	  Moose                            2.2009        0
	  Path::Class                        0.37        0
	  Smart::Comments                    1.06        0
	  Test::Files                        0.14        0
	  Test::Most                         0.35        0
	  aliased                            0.34        0
	  autodie                            2.23        0
	  experimental                      0.007        0
	  feature                            1.36        0
	  namespace::autoclean               0.28        0
	  strict                             1.08        0
	  warnings                           1.23        0

Perl module toolchain versions installed:
	Module Name                        Have
	CPANPLUS                         0.9170
	CPANPLUS::Dist::Build              0.88
	Cwd                                3.62
	ExtUtils::CBuilder             0.280226
	ExtUtils::Command                  7.30
	ExtUtils::Install                  2.14
	ExtUtils::MakeMaker                7.30
	ExtUtils::Manifest                 1.70
	ExtUtils::ParseXS                  3.35
	File::Spec                         3.62
	Module::Build                    0.4224
	Pod::Parser                        1.62
	Pod::Simple                        3.28
	Test2                          1.302096
	Test::Harness                      3.39
	Test::More                     1.302096
	version                          0.9918

******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender.  As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.

If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally.  We appreciate your patience. :)
**********************************************************************

Additional comments:


This report was machine-generated by CPANPLUS::Dist::YACSmoke 1.02.
Powered by minismokebox version 0.68

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    NONINTERACTIVE_TESTING = 1
    PATH = /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/fRYDFIoU9J/Bio-MUST-Apps-TwoScalp-0.180160/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/swjNADoiPP/Bio-MUST-Core-0.180190/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/MUoFcyDIsK/Test-YAML-1.06/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/a2xKsgpnQG/Cpanel-JSON-XS-3.0239/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/8711EmNdzg/Moose-2.2009/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/n9rPOE3WER/Package-Stash-0.37/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/6vYGalev_z/libwww-perl-6.31/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/jtdsI3T9LW/File-Find-Rule-0.34/blib/script:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/home/cpan/bin
    PERL5LIB = 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us/5.20.1/build/k7bAkNgTIK/XML-Bare-0.53/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/k7bAkNgTIK/XML-Bare-0.53/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/FkDXMTszkS/YAML-LibYAML-0.69/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/FkDXMTszkS/YAML-LibYAML-0.69/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/IakEGMtlcp/aliased-0.34/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/IakEGMtlcp/aliased-0.34/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/swjNADoiPP/Bio-MUST-Core-0.180190/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/swjNADoiPP/Bio-MUST-Core-0.180190/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/iE3qjrKKD6/Bio-FastParsers-0.173640/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/iE3qjrKKD6/Bio-FastParsers-0.173640/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/dO4Z6M1J7A/Bio-MUST-Drivers-0.173510/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/dO4Z6M1J7A/Bio-MUST-Drivers-0.173510/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/fRYDFIoU9J/Bio-MUST-Apps-TwoScalp-0.180160/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/fRYDFIoU9J/Bio-MUST-Apps-TwoScalp-0.180160/blib/arch
    PERL5_CPANPLUS_IS_RUNNING = 92872
    PERL5_CPANPLUS_IS_VERSION = 0.9170
    PERL5_MINISMOKEBOX = 0.68
    PERL5_YACSMOKE_BASE = /usr/home/cpan/pit/bare/conf/perl-5.20.1
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_MM_USE_DEFAULT = 1
    SHELL = /usr/local/bin/bash
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    Perl: $^X = /usr/home/cpan/pit/bare/perl-5.20.1/bin/perl
    UID:  $<  = 1002
    EUID: $>  = 1002
    GID:  $(  = 1002 1002
    EGID: $)  = 1002 1002


-------------------------------


--

Summary of my perl5 (revision 5 version 20 subversion 1) configuration:
   
  Platform:
    osname=freebsd, osvers=11.1-release, archname=amd64-freebsd
    uname='freebsd fforc 11.1-release freebsd 11.1-release #0 r321309: fri jul 21 02:08:28 utc 2017 root@releng2.nyi.freebsd.org:usrobjusrsrcsysgeneric amd64 '
    config_args='-des -Dprefix=/usr/home/cpan/pit/bare/perl-5.20.1'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include',
    optimize='-O',
    cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
    ccversion='', gccversion='4.2.1 Compatible FreeBSD Clang 4.0.0 (tags/RELEASE_400/final 297347)', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags ='-Wl,-E  -fstack-protector -L/usr/local/lib'
    libpth=/usr/lib /usr/local/lib /usr/bin/../lib/clang/4.0.0/lib /usr/lib
    libs=-lgdbm -lm -lcrypt -lutil -lc
    perllibs=-lm -lcrypt -lutil -lc
    libc=, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
    cccdlflags='-DPIC -fPIC', lddlflags='-shared  -L/usr/local/lib -fstack-protector'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
                        PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
                        USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
                        USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
                        USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
  Locally applied patches:
	Devel::PatchPerl 1.48
  Built under freebsd
  Compiled at Jul 26 2017 23:43:24
  %ENV:
    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.1/.cpanplus/5.20.1/build/k7bAkNgTIK/XML-Bare-0.53/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/k7bAkNgTIK/XML-Bare-0.53/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/FkDXMTszkS/YAML-LibYAML-0.69/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/FkDXMTszkS/YAML-LibYAML-0.69/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/IakEGMtlcp/aliased-0.34/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/IakEGMtlcp/aliased-0.34/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/swjNADoiPP/Bio-MUST-Core-0.180190/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/swjNADoiPP/Bio-MUST-Core-0.180190/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/iE3qjrKKD6/Bio-FastParsers-0.173640/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/iE3qjrKKD6/Bio-FastParsers-0.173640/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/dO4Z6M1J7A/Bio-MUST-Drivers-0.173510/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/dO4Z6M1J7A/Bio-MUST-Drivers-0.173510/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/fRYDFIoU9J/Bio-MUST-Apps-TwoScalp-0.180160/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/fRYDFIoU9J/Bio-MUST-Apps-TwoScalp-0.180160/blib/arch"
    PERL5_CPANPLUS_IS_RUNNING="92872"
    PERL5_CPANPLUS_IS_VERSION="0.9170"
    PERL5_MINISMOKEBOX="0.68"
    PERL5_YACSMOKE_BASE="/usr/home/cpan/pit/bare/conf/perl-5.20.1"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
    PERL_MM_USE_DEFAULT="1"
  @INC:
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    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/EQamtUX5dz/Bio-LITE-Taxonomy-0.07/blib/lib
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    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/yFj7eMPSn8/Bio-LITE-Taxonomy-NCBI-0.1/blib/lib
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/yFj7eMPSn8/Bio-LITE-Taxonomy-NCBI-0.1/blib/arch
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/s1dzdohLj0/File-Tail-1.3/blib/lib
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/s1dzdohLj0/File-Tail-1.3/blib/arch
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/X8221CDS3o/Bio-LITE-Taxonomy-NCBI-Gi2taxid-0.13/blib/lib
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/X8221CDS3o/Bio-LITE-Taxonomy-NCBI-Gi2taxid-0.13/blib/arch
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/x0EVzkpceH/Bio-Phylo-v2.0.1/blib/lib
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/x0EVzkpceH/Bio-Phylo-v2.0.1/blib/arch
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    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/u7F_191g7y/Config-Any-0.32/blib/arch
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/bG1jCARgNw/ExtUtils-Config-0.008/blib/lib
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/bG1jCARgNw/ExtUtils-Config-0.008/blib/arch
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    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/SXhzbq_1i5/ExtUtils-InstallPaths-0.011/blib/lib
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    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/IwrR1gw3Nb/Module-Build-Tiny-0.039/blib/lib
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    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/s7tat6xdCF/Sub-Exporter-Progressive-0.001013/blib/lib
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/s7tat6xdCF/Sub-Exporter-Progressive-0.001013/blib/arch
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/4mki5PG1h_/Try-Tiny-0.30/blib/lib
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/4mki5PG1h_/Try-Tiny-0.30/blib/arch
    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/7lGpsR7DCw/Test-Fatal-0.014/blib/lib
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    /usr/home/cpan/pit/bare/conf/perl-5.20.1/.cpanplus/5.20.1/build/eHOUQaCnIF/Const-Fast-0.014/blib/lib
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