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From: metabase:user:e3434da8-b236-11df-85ca-0247c6d74bde
Subject: FAIL Bio-PrimerDesigner-0.02 v5.8.9 GNU/Linux
Date: 2010-11-01T12:59:21Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Sheldon McKay,
This is a computer-generated report for Bio-PrimerDesigner-0.02
on perl 5.8.9, created by CPAN-Reporter-1.1803.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /home/cpt3/testing/perl-5.8.9/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/epcr...............
# Failed test 'use Bio::PrimerDesigner;'
# at t/epcr.t line 12.
# Tried to use 'Bio::PrimerDesigner'.
# Error: Can't locate Bio/PrimerDesigner.pm in @INC (@INC contains: /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/lib /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/lib /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 . /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 .) at (eval 2) line 2.
# BEGIN failed--compilation aborted at (eval 2) line 2.
Can't locate object method "new" via package "Bio::PrimerDesigner" (perhaps you forgot to load "Bio::PrimerDesigner"?) at t/epcr.t line 14.
# Looks like you planned 8 tests but only ran 1.
# Looks like you failed 1 test of 1 run.
# Looks like your test died just after 1.
dubious
Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-8
Failed 8/8 tests, 0.00% okay
t/primer3............
# Failed test 'use Bio::PrimerDesigner;'
# at t/primer3.t line 12.
# Tried to use 'Bio::PrimerDesigner'.
# Error: Can't locate Bio/PrimerDesigner.pm in @INC (@INC contains: /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/lib /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/lib /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 . /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 .) at (eval 2) line 2.
# BEGIN failed--compilation aborted at (eval 2) line 2.
Can't locate object method "new" via package "Bio::PrimerDesigner" (perhaps you forgot to load "Bio::PrimerDesigner"?) at t/primer3.t line 14.
# Looks like you planned 7 tests but only ran 1.
# Looks like you failed 1 test of 1 run.
# Looks like your test died just after 1.
dubious
Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-7
Failed 7/7 tests, 0.00% okay
t/primer_designer....
# Failed test 'use Bio::PrimerDesigner;'
# at t/primer_designer.t line 21.
# Tried to use 'Bio::PrimerDesigner'.
# Error: Can't locate Bio/PrimerDesigner.pm in @INC (@INC contains: /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/lib /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/lib /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 . /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 .) at (eval 2) line 2.
# BEGIN failed--compilation aborted at (eval 2) line 2.
Can't locate object method "new" via package "Bio::PrimerDesigner" (perhaps you forgot to load "Bio::PrimerDesigner"?) at t/primer_designer.t line 23.
# Looks like you planned 22 tests but only ran 1.
# Looks like you failed 1 test of 1 run.
# Looks like your test died just after 1.
dubious
Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-22
Failed 22/22 tests, 0.00% okay
t/remote.............
# Failed test 'Call to remote server'
# at t/remote.t line 20.
# Looks like you failed 1 test of 5.
dubious
Test returned status 1 (wstat 256, 0x100)
DIED. FAILED test 5
Failed 1/5 tests, 80.00% okay
t/result.............
# Failed test 'use Bio::PrimerDesigner;'
# at t/result.t line 12.
# Tried to use 'Bio::PrimerDesigner'.
# Error: Can't locate Bio/PrimerDesigner.pm in @INC (@INC contains: /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/lib /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/lib /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 . /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 .) at (eval 2) line 2.
# BEGIN failed--compilation aborted at (eval 2) line 2.
Can't locate object method "new" via package "Bio::PrimerDesigner" (perhaps you forgot to load "Bio::PrimerDesigner"?) at t/result.t line 14.
# Looks like you planned 3 tests but only ran 1.
# Looks like you failed 1 test of 1 run.
# Looks like your test died just after 1.
dubious
Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-3
Failed 3/3 tests, 0.00% okay
t/tables.............Can't locate Bio/PrimerDesigner.pm in @INC (@INC contains: /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/lib /home/cpt3/.cpan/build/Bio-PrimerDesigner-0.02-cCX9D5/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/arch /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/lib /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 . /home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/5.8.9 /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux /home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9 .) at t/tables.t line 11.
BEGIN failed--compilation aborted at t/tables.t line 11.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-10
Failed 10/10 tests, 0.00% okay
Failed Test Stat Wstat Total Fail List of Failed
-------------------------------------------------------------------------------
t/epcr.t 255 65280 8 15 1-8
t/primer3.t 255 65280 7 13 1-7
t/primer_designer.t 255 65280 22 43 1-22
t/remote.t 1 256 5 1 5
t/result.t 255 65280 3 5 1-3
t/tables.t 255 65280 10 20 1-10
Failed 6/6 test scripts. 51/55 subtests failed.
Files=6, Tests=55, 1 wallclock secs ( 0.16 cusr + 0.03 csys = 0.19 CPU)
Failed 6/6 test programs. 51/55 subtests failed.
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
-------------- ---- -----
Class::Base 0 0.03
HTTP::Request 0 5.827
HTTP::Response 0 5.836
LWP::UserAgent 0 5.835
Test::More 0 0.80
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.utf8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5LIB = /home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/arch:/home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 22963
PERL5_CPAN_IS_RUNNING = 22963
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 20242,22963
PERL_CR_SMOKER_CURRENT = Bio-PrimerDesigner-0.02
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/cpt3/testing/perl-5.8.9/bin/perl
$UID/$EUID = 1004 / 1004
$GID = 1004 20 24 25 27 29 30 44 46 100 103 111 113 114 1004
$EGID = 1004 20 24 25 27 29 30 44 46 100 103 111 113 114 1004
Perl module toolchain versions installed:
Module Have
------------------- -------
CPAN 1.9301
Cwd 3.29
ExtUtils::CBuilder 0.2703
ExtUtils::Command 1.15
ExtUtils::Install 1.50_01
ExtUtils::MakeMaker 6.48
ExtUtils::Manifest 1.55
ExtUtils::ParseXS 2.19
File::Spec 3.29
Module::Build 0.3607
Module::Signature n/a
Test::Harness 2.64
Test::More 0.80
YAML 0.72
YAML::Syck n/a
version n/a
--
Summary of my perl5 (revision 5 version 8 subversion 9) configuration:
Platform:
osname=linux, osvers=2.6.35-4.slh.9-aptosid-686, archname=i686-linux
uname='linux firenze 2.6.35-4.slh.9-aptosid-686 #1 smp preempt mon sep 13 16:40:35 utc 2010 i686 gnulinux '
config_args='-Dprefix=/home/cpt3/testing/perl-5.8.9'
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=undef use64bitall=undef uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.4.5', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=/lib/libc-2.11.2.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.11.2'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: PERL_MALLOC_WRAP USE_FAST_STDIO USE_LARGE_FILES
USE_PERLIO
Built under linux
Compiled at Oct 11 2010 12:18:13
%ENV:
PERL5LIB="/home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/arch:/home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="22963"
PERL5_CPAN_IS_RUNNING="22963"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="20242,22963"
PERL_CR_SMOKER_CURRENT="Bio-PrimerDesigner-0.02"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/arch
/home/cpt3/.cpan/build/Class-Base-0.03-mx5pm6/blib/lib
/home/cpt3/testing/perl-5.8.9/lib/5.8.9/i686-linux
/home/cpt3/testing/perl-5.8.9/lib/5.8.9
/home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9/i686-linux
/home/cpt3/testing/perl-5.8.9/lib/site_perl/5.8.9
.