Bio-DB-NCBIHelper v1.7.8 Perl 5 v5.40.2 MSWin32-x64-multi-thread

Status
Pass
From
LNATION
Dist
Bio-DB-NCBIHelper v1.7.8
Platform
Perl 5 v5.40.2 MSWin32-x64-multi-thread
Date
2025-05-22 16:15:58
ID
e3397f8f-6c24-1014-8029-c0fc8df6cb0c
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear Christopher Fields,

This is a computer-generated report for Bio-DB-NCBIHelper-1.7.8
on perl 5.40.2, created by CPAN-Reporter-1.2020.

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from 'C:\Strawberry\c\bin\gmake.EXE test':

"C:\Strawberry\perl\bin\perl.exe" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib\lib', 'blib\arch')" t/*.t
t/00-compile.t ......... ok
t/author-mojibake.t .... skipped: these tests are for testing by the author
t/author-pod-syntax.t .. skipped: these tests are for testing by the author
Subroutine _initialize redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 45.
Subroutine next_seq redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 60.
Subroutine _process_refseq redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 325.
Subroutine _process_links redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 424.
Subroutine _add_to_ann redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 449.
Subroutine _process_comments redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 462.
Subroutine _process_src redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 627.
Subroutine _add_references redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 692.
Subroutine _process_locus redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 714.
Subroutine _process_products_coordinates redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 775.
Subroutine _process_prop redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 836.
Subroutine _process_all_comments redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 867.
Subroutine _process_STS redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 959.
Subroutine _process_go redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 988.
Subroutine _process_grif redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 1014.
Subroutine _get_go_term redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 1070.
Subroutine _backcomp_ll redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 1089.
t/EntrezGene.t ......... ok
t/GenBank.t ............ ok
t/GenPept.t ............ ok
t/Query-Genbank.t ...... ok
t/RefSeq.t ............. ok
t/Taxonomy.t ........... ok
All tests successful.
Files=9, Tests=174, 164 wallclock secs ( 0.16 usr +  0.01 sys =  0.17 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                   Need   Have    
    ------------------------ ------ --------
    base                     0      2.27    
    Bio::DB::Query::WebQuery v1.7.7 1.7.8   
    Bio::DB::Taxonomy        0      1.7.8   
    Bio::DB::WebDBSeqI       0      1.7.8   
    Bio::Root::IO            0      1.7.8   
    Bio::Root::Root          0      1.7.8   
    Bio::SeqIO               0      1.7.8   
    Bio::SeqIO::entrezgene   0      1.73    
    Bio::Taxon               0      1.7.8   
    Bio::WebAgent            0      1.7.8   
    Cache::FileCache         0      0       
    CGI                      0      4.68    
    constant                 0      1.33    
    Getopt::Long             0      2.58    
    HTTP::Request::Common    0      7.00    
    LWP::Protocol::https     0      6.14    
    LWP::UserAgent           0      6.78    
    perl                     5.006  5.040002
    strict                   0      1.13    
    URI                      0      5.32    
    URI::Escape              0      5.32    
    vars                     0      1.05    
    warnings                 0      1.70    
    XML::Twig                0      3.53    

build_requires:

    Module                   Need   Have    
    ------------------------ ------ --------
    ExtUtils::MakeMaker      0      7.74    
    File::Spec               0      3.91    
    IO::Handle               0      1.55    
    IPC::Open3               0      1.22    
    Test::Exception          0      0.43    
    Test::More               0      1.302213
    Test::Most               0      0.38    
    Test::RequiresInternet   0      0.05    

configure_requires:

    Module                   Need   Have    
    ------------------------ ------ --------
    ExtUtils::MakeMaker      0      7.74    


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    COMSPEC = C:\Windows\system32\cmd.exe
    NUMBER_OF_PROCESSORS = 2
    PATH = C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Windows\System32\OpenSSH\;C:\Program Files\Amazon\cfn-bootstrap\;C:\Strawberry\c\bin;C:\Strawberry\perl\site\bin;C:\Strawberry\perl\bin;C:\Users\Administrator\AppData\Local\Microsoft\WindowsApps;C:\Users\Administrator\AppData\Local\Microsoft\WinGet\Links;
    PERL5LIB = 
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 3620
    PERL5_CPAN_IS_RUNNING = 3620
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 4336,3620
    PERL_CR_SMOKER_CURRENT = Bio-Kmer-0.55
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_MM_USE_DEFAULT = 1
    PERL_USE_UNSAFE_INC = 1
    PROCESSOR_IDENTIFIER = Intel64 Family 6 Model 85 Stepping 7, GenuineIntel
    TEMP = C:\Users\ADMINI~1\AppData\Local\Temp\2

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = C:\Strawberry\perl\bin\perl.exe
    $UID/$EUID = 0 / 0
    $GID = 0
    $EGID = 0
    Win32::GetOSName = WinServer
    Win32::GetOSVersion = , 10, 0, 26100, 2, 0, 0, 400, 3
    Win32::FsType = NTFS
    Win32::IsAdminUser = 1

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.38    
    CPAN::Meta          2.150010
    Cwd                 3.91    
    ExtUtils::CBuilder  0.280240
    ExtUtils::Command   7.74    
    ExtUtils::Install   2.22    
    ExtUtils::MakeMaker 7.74    
    ExtUtils::Manifest  1.75    
    ExtUtils::ParseXS   3.57    
    File::Spec          3.91    
    JSON                4.10    
    JSON::PP            4.16    
    Module::Build       0.4234  
    Module::Signature   n/a     
    Parse::CPAN::Meta   2.150010
    Test2               1.302213
    Test::Harness       3.52    
    Test::More          1.302213
    YAML                1.31    
    YAML::Syck          1.34    
    version             0.9933  


--

Summary of my perl5 (revision 5 version 40 subversion 2) configuration:
   
  Platform:
    osname=MSWin32
    osvers=10.0.22631.5189
    archname=MSWin32-x64-multi-thread
    uname='Win32 strawberry-perl 5.40.2.1 # 05:42:50 Sun May 11 2025 x64'
    config_args='undef'
    hint=recommended
    useposix=true
    d_sigaction=undef
    useithreads=define
    usemultiplicity=define
    use64bitint=define
    use64bitall=undef
    uselongdouble=undef
    usemymalloc=n
    default_inc_excludes_dot=define
  Compiler:
    cc='gcc'
    ccflags ='-std=c99 -DWIN32 -DWIN64 -DPERL_TEXTMODE_SCRIPTS -DMULTIPLICITY -DPERL_IMPLICIT_SYS -DUSE_PERLIO -D__USE_MINGW_ANSI_STDIO -fwrapv -fno-strict-aliasing -mms-bitfields'
    optimize='-O2'
    cppflags='-DWIN32'
    ccversion=''
    gccversion='13.2.0'
    gccosandvers=''
    intsize=4
    longsize=4
    ptrsize=8
    doublesize=8
    byteorder=12345678
    doublekind=3
    d_longlong=define
    longlongsize=8
    d_longdbl=define
    longdblsize=16
    longdblkind=3
    ivtype='long long'
    ivsize=8
    nvtype='double'
    nvsize=8
    Off_t='long long'
    lseeksize=8
    alignbytes=8
    prototype=define
  Linker and Libraries:
    ld='g++'
    ldflags ='-s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib" -L"C:\STRAWB~1\c\x86_64-w64-mingw32\lib" -L"C:\STRAWB~1\c\lib\gcc\x86_64-w64-mingw32\13.2.0"'
    libpth=C:\STRAWB~1\c\lib C:\STRAWB~1\c\x86_64-w64-mingw32\lib C:\STRAWB~1\c\lib\gcc\x86_64-w64-mingw32\13.2.0 C:\STRAWB~1\c\x86_64-w64-mingw32\lib C:\STRAWB~1\c\lib\gcc\x86_64-w64-mingw32\13.2.0
    libs= -lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
    perllibs= -lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
    libc=-lucrt
    so=dll
    useshrplib=true
    libperl=libperl540.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_win32.xs
    dlext=xs.dll
    d_dlsymun=undef
    ccdlflags=' '
    cccdlflags=' '
    lddlflags='-shared -s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib" -L"C:\STRAWB~1\c\x86_64-w64-mingw32\lib" -L"C:\STRAWB~1\c\lib\gcc\x86_64-w64-mingw32\13.2.0"'


Characteristics of this binary (from libperl): 
  Compile-time options:
    HAS_LONG_DOUBLE
    HAS_TIMES
    HAVE_INTERP_INTERN
    MULTIPLICITY
    PERLIO_LAYERS
    PERL_COPY_ON_WRITE
    PERL_DONT_CREATE_GVSV
    PERL_HASH_FUNC_SIPHASH13
    PERL_HASH_USE_SBOX32
    PERL_IMPLICIT_SYS
    PERL_MALLOC_WRAP
    PERL_OP_PARENT
    PERL_PRESERVE_IVUV
    PERL_USE_SAFE_PUTENV
    USE_64_BIT_INT
    USE_ITHREADS
    USE_LARGE_FILES
    USE_LOCALE
    USE_LOCALE_COLLATE
    USE_LOCALE_CTYPE
    USE_LOCALE_NUMERIC
    USE_LOCALE_TIME
    USE_PERLIO
    USE_PERL_ATOF
    USE_THREAD_SAFE_LOCALE
  Built under MSWin32
  Compiled at May 11 2025 15:48:20
  %ENV:
    PERL5_CPANPLUS_IS_RUNNING="3620"
    PERL5_CPAN_IS_RUNNING="3620"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="4336,3620"
    PERL_CR_SMOKER_CURRENT="Bio-Kmer-0.55"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
    PERL_MM_USE_DEFAULT="1"
    PERL_USE_UNSAFE_INC="1"
  @INC:
    C:/Strawberry/perl/site/lib
    C:/Strawberry/perl/vendor/lib
    C:/Strawberry/perl/lib
    .