Bio-DB-NCBIHelper v1.7.8 Perl 5 v5.40.2 MSWin32-x64-multi-thread
- Status
- Pass
- From
- LNATION
- Dist
-
Bio-DB-NCBIHelper v1.7.8
- Platform
- Perl 5 v5.40.2 MSWin32-x64-multi-thread
- Date
- 2025-05-22 16:15:58
- ID
- e3397f8f-6c24-1014-8029-c0fc8df6cb0c
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for Bio-DB-NCBIHelper-1.7.8
on perl 5.40.2, created by CPAN-Reporter-1.2020.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\Strawberry\c\bin\gmake.EXE test':
"C:\Strawberry\perl\bin\perl.exe" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib\lib', 'blib\arch')" t/*.t
t/00-compile.t ......... ok
t/author-mojibake.t .... skipped: these tests are for testing by the author
t/author-pod-syntax.t .. skipped: these tests are for testing by the author
Subroutine _initialize redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 45.
Subroutine next_seq redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 60.
Subroutine _process_refseq redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 325.
Subroutine _process_links redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 424.
Subroutine _add_to_ann redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 449.
Subroutine _process_comments redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 462.
Subroutine _process_src redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 627.
Subroutine _add_references redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 692.
Subroutine _process_locus redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 714.
Subroutine _process_products_coordinates redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 775.
Subroutine _process_prop redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 836.
Subroutine _process_all_comments redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 867.
Subroutine _process_STS redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 959.
Subroutine _process_go redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 988.
Subroutine _process_grif redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 1014.
Subroutine _get_go_term redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 1070.
Subroutine _backcomp_ll redefined at C:/Strawberry/perl/site/lib/Bio\SeqIO\entrezgene.pm line 1089.
t/EntrezGene.t ......... ok
t/GenBank.t ............ ok
t/GenPept.t ............ ok
t/Query-Genbank.t ...... ok
t/RefSeq.t ............. ok
t/Taxonomy.t ........... ok
All tests successful.
Files=9, Tests=174, 164 wallclock secs ( 0.16 usr + 0.01 sys = 0.17 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------ ------ --------
base 0 2.27
Bio::DB::Query::WebQuery v1.7.7 1.7.8
Bio::DB::Taxonomy 0 1.7.8
Bio::DB::WebDBSeqI 0 1.7.8
Bio::Root::IO 0 1.7.8
Bio::Root::Root 0 1.7.8
Bio::SeqIO 0 1.7.8
Bio::SeqIO::entrezgene 0 1.73
Bio::Taxon 0 1.7.8
Bio::WebAgent 0 1.7.8
Cache::FileCache 0 0
CGI 0 4.68
constant 0 1.33
Getopt::Long 0 2.58
HTTP::Request::Common 0 7.00
LWP::Protocol::https 0 6.14
LWP::UserAgent 0 6.78
perl 5.006 5.040002
strict 0 1.13
URI 0 5.32
URI::Escape 0 5.32
vars 0 1.05
warnings 0 1.70
XML::Twig 0 3.53
build_requires:
Module Need Have
------------------------ ------ --------
ExtUtils::MakeMaker 0 7.74
File::Spec 0 3.91
IO::Handle 0 1.55
IPC::Open3 0 1.22
Test::Exception 0 0.43
Test::More 0 1.302213
Test::Most 0 0.38
Test::RequiresInternet 0 0.05
configure_requires:
Module Need Have
------------------------ ------ --------
ExtUtils::MakeMaker 0 7.74
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
COMSPEC = C:\Windows\system32\cmd.exe
NUMBER_OF_PROCESSORS = 2
PATH = C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Windows\System32\OpenSSH\;C:\Program Files\Amazon\cfn-bootstrap\;C:\Strawberry\c\bin;C:\Strawberry\perl\site\bin;C:\Strawberry\perl\bin;C:\Users\Administrator\AppData\Local\Microsoft\WindowsApps;C:\Users\Administrator\AppData\Local\Microsoft\WinGet\Links;
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 3620
PERL5_CPAN_IS_RUNNING = 3620
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 4336,3620
PERL_CR_SMOKER_CURRENT = Bio-Kmer-0.55
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
PROCESSOR_IDENTIFIER = Intel64 Family 6 Model 85 Stepping 7, GenuineIntel
TEMP = C:\Users\ADMINI~1\AppData\Local\Temp\2
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\Strawberry\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinServer
Win32::GetOSVersion = , 10, 0, 26100, 2, 0, 0, 400, 3
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.38
CPAN::Meta 2.150010
Cwd 3.91
ExtUtils::CBuilder 0.280240
ExtUtils::Command 7.74
ExtUtils::Install 2.22
ExtUtils::MakeMaker 7.74
ExtUtils::Manifest 1.75
ExtUtils::ParseXS 3.57
File::Spec 3.91
JSON 4.10
JSON::PP 4.16
Module::Build 0.4234
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test2 1.302213
Test::Harness 3.52
Test::More 1.302213
YAML 1.31
YAML::Syck 1.34
version 0.9933
--
Summary of my perl5 (revision 5 version 40 subversion 2) configuration:
Platform:
osname=MSWin32
osvers=10.0.22631.5189
archname=MSWin32-x64-multi-thread
uname='Win32 strawberry-perl 5.40.2.1 # 05:42:50 Sun May 11 2025 x64'
config_args='undef'
hint=recommended
useposix=true
d_sigaction=undef
useithreads=define
usemultiplicity=define
use64bitint=define
use64bitall=undef
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
Compiler:
cc='gcc'
ccflags ='-std=c99 -DWIN32 -DWIN64 -DPERL_TEXTMODE_SCRIPTS -DMULTIPLICITY -DPERL_IMPLICIT_SYS -DUSE_PERLIO -D__USE_MINGW_ANSI_STDIO -fwrapv -fno-strict-aliasing -mms-bitfields'
optimize='-O2'
cppflags='-DWIN32'
ccversion=''
gccversion='13.2.0'
gccosandvers=''
intsize=4
longsize=4
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='long long'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='g++'
ldflags ='-s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib" -L"C:\STRAWB~1\c\x86_64-w64-mingw32\lib" -L"C:\STRAWB~1\c\lib\gcc\x86_64-w64-mingw32\13.2.0"'
libpth=C:\STRAWB~1\c\lib C:\STRAWB~1\c\x86_64-w64-mingw32\lib C:\STRAWB~1\c\lib\gcc\x86_64-w64-mingw32\13.2.0 C:\STRAWB~1\c\x86_64-w64-mingw32\lib C:\STRAWB~1\c\lib\gcc\x86_64-w64-mingw32\13.2.0
libs= -lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs= -lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=-lucrt
so=dll
useshrplib=true
libperl=libperl540.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs
dlext=xs.dll
d_dlsymun=undef
ccdlflags=' '
cccdlflags=' '
lddlflags='-shared -s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib" -L"C:\STRAWB~1\c\x86_64-w64-mingw32\lib" -L"C:\STRAWB~1\c\lib\gcc\x86_64-w64-mingw32\13.2.0"'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_LONG_DOUBLE
HAS_TIMES
HAVE_INTERP_INTERN
MULTIPLICITY
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_SIPHASH13
PERL_HASH_USE_SBOX32
PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_SAFE_PUTENV
USE_64_BIT_INT
USE_ITHREADS
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
USE_THREAD_SAFE_LOCALE
Built under MSWin32
Compiled at May 11 2025 15:48:20
%ENV:
PERL5_CPANPLUS_IS_RUNNING="3620"
PERL5_CPAN_IS_RUNNING="3620"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="4336,3620"
PERL_CR_SMOKER_CURRENT="Bio-Kmer-0.55"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
C:/Strawberry/perl/site/lib
C:/Strawberry/perl/vendor/lib
C:/Strawberry/perl/lib
.