Bio-DB-NCBIHelper v1.7.4 Perl 5 v5.24.0 MSWin32-x86-multi-thread
- Status
- Fail
- From
- Alexandr Ciornii (CHORNY)
- Dist
-
Bio-DB-NCBIHelper v1.7.4
- Platform
- Perl 5 v5.24.0 MSWin32-x86-multi-thread
- Date
- 2019-03-11 08:08:12
- ID
- eb57a0c6-6bf3-1014-9b8c-2ef8a6e97b6c
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for Bio-DB-NCBIHelper-1.7.4
on perl 5.24.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\STRAWB~1\c\bin\dmake.exe test':
"C:\Strawberry240\perl\bin\perl.exe" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib\lib', 'blib\arch')" t/*.t
t/00-compile.t ......... ok
t/author-mojibake.t .... skipped: these tests are for testing by the author
t/author-pod-syntax.t .. skipped: these tests are for testing by the author
# Failed test 'use Bio::SeqIO::entrezgene;'
# at t/EntrezGene.t line 9.
# Tried to use 'Bio::SeqIO::entrezgene'.
# Error: Can't locate Bio/ASN1/EntrezGene.pm in @INC (you may need to install the Bio::ASN1::EntrezGene module) (@INC contains: C:\STRAWB~1\cpan\build\Bio-DB-NCBIHelper-1.7.4-0\blib\lib C:\STRAWB~1\cpan\build\Bio-DB-NCBIHelper-1.7.4-0\blib\arch C:/Strawberry240/perl/site/lib C:/Strawberry240/perl/vendor/lib C:/Strawberry240/perl/lib .) at C:/Strawberry240/perl/site/lib/Bio/SeqIO/entrezgene.pm line 122.
# BEGIN failed--compilation aborted at C:/Strawberry240/perl/site/lib/Bio/SeqIO/entrezgene.pm line 122.
# Compilation failed in require at t/EntrezGene.t line 9.
# BEGIN failed--compilation aborted at t/EntrezGene.t line 9.
Bio::SeqIO: entrezgene cannot be found
Exception
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Failed to load module Bio::SeqIO::entrezgene. Can't locate Bio/ASN1/EntrezGene.pm in @INC (you may need to install the Bio::ASN1::EntrezGene module) (@INC contains: C:\STRAWB~1\cpan\build\Bio-DB-NCBIHelper-1.7.4-0\blib\lib C:\STRAWB~1\cpan\build\Bio-DB-NCBIHelper-1.7.4-0\blib\arch C:/Strawberry240/perl/site/lib C:/Strawberry240/perl/vendor/lib C:/Strawberry240/perl/lib .) at C:/Strawberry240/perl/site/lib/Bio\SeqIO\entrezgene.pm line 122.
BEGIN failed--compilation aborted at C:/Strawberry240/perl/site/lib/Bio\SeqIO\entrezgene.pm line 122.
Compilation failed in require at C:/Strawberry240/perl/site/lib/Bio/Root/Root.pm line 518.
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry240/perl/site/lib/Bio/Root/Root.pm:447
STACK: Bio::Root::Root::_load_module C:/Strawberry240/perl/site/lib/Bio/Root/Root.pm:520
STACK: Bio::SeqIO::_load_format_module C:/Strawberry240/perl/site/lib/Bio/SeqIO.pm:632
STACK: Bio::SeqIO::new C:/Strawberry240/perl/site/lib/Bio/SeqIO.pm:434
STACK: Bio::DB::WebDBSeqI::get_seq_stream C:/Strawberry240/perl/site/lib/Bio/DB/WebDBSeqI.pm:504
STACK: Bio::DB::WebDBSeqI::get_Stream_by_id C:/Strawberry240/perl/site/lib/Bio/DB/WebDBSeqI.pm:293
STACK: t/EntrezGene.t:21
-----------------------------------------------------------
For more information about the SeqIO system please see the SeqIO docs.
This includes ways of checking for formats at compile time, not run time
Can't call method "next_seq" on an undefined value at t/EntrezGene.t line 23.
# Looks like your test exited with 2 just after 3.
t/EntrezGene.t .........
Dubious, test returned 2 (wstat 512, 0x200)
Failed 7/9 subtests
t/GenBank.t ............ ok
t/GenPept.t ............ ok
t/Query-Genbank.t ...... ok
t/RefSeq.t ............. ok
# 5533
t/Taxonomy.t ........... ok
Test Summary Report
-------------------
t/EntrezGene.t (Wstat: 512 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 2
Parse errors: Bad plan. You planned 9 tests but ran 3.
Files=9, Tests=169, 106 wallclock secs ( 0.12 usr + 0.08 sys = 0.20 CPU)
Result: FAIL
Failed 1/9 test programs. 1/169 subtests failed.
dmake.exe: Error code 255, while making 'test_dynamic'
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------ ----- --------
base 0 2.23
Bio::DB::Query::WebQuery 0 0
Bio::DB::Taxonomy 0 0
Bio::DB::WebDBSeqI 0 1.007001
Bio::Root::IO 0 0
Bio::Root::Root 0 1.007001
Bio::SeqIO 0 1.007001
Bio::Taxon 0 0
Bio::WebAgent 0 0
Cache::FileCache 0 0
CGI 0 4.35
constant 0 1.33
Getopt::Long 0 2.49
HTTP::Request::Common 0 6.11
LWP::UserAgent 0 6.15
perl 5.006 5.024000
strict 0 1.11
URI 0 1.71
URI::Escape 0 3.31
vars 0 1.03
warnings 0 1.36
XML::Twig 0 3.52
build_requires:
Module Need Have
------------------------ ----- --------
ExtUtils::MakeMaker 0 7.24
File::Spec 0 3.63
IO::Handle 0 1.36
IPC::Open3 0 1.20
Test::Exception 0 0.43
Test::More 0 1.302073
Test::Most 0 0.35
Test::RequiresInternet 0 0.05
configure_requires:
Module Need Have
------------------------ ----- --------
ExtUtils::MakeMaker 0 7.24
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
COMSPEC = C:\WINDOWS\system32\cmd.exe
NUMBER_OF_PROCESSORS = 1
PATH = C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Git\cmd;C:\Strawberry240\c\bin;C:\Strawberry240\perl\site\bin;C:\Strawberry240\perl\bin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 348
PERL5_CPAN_IS_RUNNING = 348
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1108,348
PERL_CR_SMOKER_CURRENT = Bio-DB-NCBIHelper-1.7.4
PERL_CR_SMOKER_RUNONCE = 1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_HASH_SEED = 0x11111111
PERL_MM_USE_DEFAULT = 1
PROCESSOR_IDENTIFIER = x86 Family 16 Model 5 Stepping 3, AuthenticAMD
TEMP = C:\DOCUME~1\a\LOCALS~1\Temp
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\Strawberry240\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinXP/.Net
Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.14
CPAN::Meta 2.150010
Cwd 3.63
ExtUtils::CBuilder 0.280225
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.31
File::Spec 3.63
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4220
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.36
Test::More 1.302073
YAML 1.21
YAML::Syck 1.29
version 0.9917
--
Summary of my perl5 (revision 5 version 24 subversion 0) configuration:
Platform:
osname=MSWin32, osvers=4.0, archname=MSWin32-x86-multi-thread
uname='Win32 strawberry-perl 5.24.0.1-beta1 #1 Thu Dec 29 16:46:05 2016 i386'
config_args='undef'
hint=recommended, useposix=true, d_sigaction=undef
useithreads=define, usemultiplicity=define
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags =' -s -O2 -DWIN32 -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -fwrapv -fno-strict-aliasing -mms-bitfields',
optimize='-s -O2',
cppflags='-DWIN32'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12, longdblkind=3
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='g++', ldflags ='-s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib"'
libpth=C:\STRAWB~1\c\lib C:\STRAWB~1\c\i686-w64-mingw32\lib C:\STRAWB~1\c\lib\gcc\i686-w64-mingw32\4.9.2
libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=, so=dll, useshrplib=true, libperl=libperl524.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs, dlext=xs.dll, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags='-mdll -s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES HAVE_INTERP_INTERN MULTIPLICITY
PERLIO_LAYERS PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV USE_ITHREADS
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
USE_PERLIO USE_PERL_ATOF
Built under MSWin32
Compiled at Dec 29 2016 16:55:33
%ENV:
PERL5_CPANPLUS_IS_RUNNING="348"
PERL5_CPAN_IS_RUNNING="348"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1108,348"
PERL_CR_SMOKER_CURRENT="Bio-DB-NCBIHelper-1.7.4"
PERL_CR_SMOKER_RUNONCE="1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_HASH_SEED="0x11111111"
PERL_MM_USE_DEFAULT="1"
@INC:
C:/Strawberry240/perl/site/lib
C:/Strawberry240/perl/vendor/lib
C:/Strawberry240/perl/lib
.