Report for Bio-Biblio-1.70

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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: PASS Bio-Biblio-1.70 v5.24.0 GNU/Linux
Date: 2016-09-16T21:45:49Z

This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear carandraug,

This is a computer-generated report for Bio-Biblio-1.70
on perl 5.24.0, created by CPAN-Reporter-1.2018.

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 "/bbbike/perl-5.24.0/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ............ ok
t/Biblio.t ................ ok
t/biofetch.t .............. ok
t/eutils.t ................ ok
t/References.t ............ ok
t/release-eol.t ........... skipped: these tests are for release candidate testing
t/release-mojibake.t ...... skipped: these tests are for release candidate testing
t/release-no-tabs.t ....... skipped: these tests are for release candidate testing
t/release-pod-coverage.t .. skipped: these tests are for release candidate testing
t/release-pod-syntax.t .... skipped: these tests are for release candidate testing
All tests successful.
Files=10, Tests=609,  8 wallclock secs ( 0.04 usr  0.06 sys +  1.98 cusr  0.74 csys =  2.82 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                  Need Have        
    ----------------------- ---- ------------
    Bio::Annotation::DBLink 0    1.007000_006
    Bio::DB::DBFetch        0    0           
    Bio::Root::IO           0    0           
    Bio::Root::Root         0    1.007000006 
    Bio::Root::RootI        0    0           
    Data::Dumper            0    2.160       
    Getopt::Std             0    1.11        
    LWP::Simple             0    6.15        
    parent                  0    0.234       
    SOAP::Lite              0    1.19        
    strict                  0    1.11        
    Symbol                  0    1.07        
    URI::Escape             0    3.31        
    utf8                    0    1.19        
    vars                    0    1.03        
    warnings                0    1.36        
    XML::Parser             0    2.44        
    XML::Twig               0    3.49        

build_requires:

    Module                  Need Have        
    ----------------------- ---- ------------
    File::Find              0    1.34        
    File::Spec              0    3.63        
    File::Temp              0    0.2304      
    Test::More              0    1.302052    

configure_requires:

    Module                  Need Have        
    ----------------------- ---- ------------
    ExtUtils::MakeMaker     6.30 7.18        


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    LANG = C
    PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
    PERL5LIB = /home/cpansand/.cpan/build/2016091621/Bio-BPWrapper-1.11-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-BPWrapper-1.11-1/blib/lib:/home/cpansand/.cpan/build/2016091621/Bio-ASN1-EntrezGene-1.72-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-ASN1-EntrezGene-1.72-1/blib/lib:/home/cpansand/.cpan/build/2016091621/App-RecordStream-Bio-0.18-1/blib/arch:/home/cpansand/.cpan/build/2016091621/App-RecordStream-Bio-0.18-1/blib/lib:/home/cpansand/.cpan/build/2016091621/App-RecordStream-4.0.20-0/blib/arch:/home/cpansand/.cpan/build/2016091621/App-RecordStream-4.0.20-0/blib/lib:/home/cpansand/.cpan/build/2016091621/Module-Versions-Report-1.06-0/blib/arch:/home/cpansand/.cpan/build/2016091621/Module-Versions-Report-1.06-0/blib/lib:/home/cpansand/.cpan/build/2016091621/Catalyst-View-Bio-SeqIO-0.02-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Catalyst-View-Bio-SeqIO-0.02-1/blib/lib:/home/cpansand/.cpan/build/2016091621/Catalyst-Plugin-AutoCRUD-2.200002-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Catalyst-Plugin-AutoCRUD-2.200002-1/blib/lib:/home/cpansand/.cpan/build/2016091621/Bio-GMOD-Blast-Graph-0.06-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-GMOD-Blast-Graph-0.06-1/blib/lib:/home/cpansand/.cpan/build/2016091621/Bio-Chado-Schema-0.20000-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-Chado-Schema-0.20000-1/blib/lib:/home/cpansand/.cpan/build/2016091621/DBIx-Class-Tree-NestedSet-0.10-0/blib/arch:/home/cpansand/.cpan/build/2016091621/DBIx-Class-Tree-NestedSet-0.10-0/blib/lib:/home/cpansand/.cpan/build/2016091621/Bio-BLAST-0.4-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-BLAST-0.4-1/blib/lib
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 13796
    PERL5_CPAN_IS_RUNNING = 13796
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 13671,13796
    PERLDOC = -MPod::Perldoc::ToTextOverstrike
    PERL_BATCH = yes
    PERL_CANARY_STABILITY_NOPROMPT = 1
    PERL_CPAN_REPORTER_CONFIG = /run/user/1023/cpansmoker/2016091621/cpanreporter_004_config.ini
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_USE_UNSAFE_INC = 1
    SHELL = /bin/zsh
    TERM = screen
    TMPDIR = /run/user/1023/cpansmoker/2016091621

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /bbbike/perl-5.24.0/bin/perl
    $UID/$EUID = 1023 / 1023
    $GID = 1023 1023
    $EGID = 1023 1023

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.14    
    CPAN::Meta          2.150010
    Cwd                 3.63    
    ExtUtils::CBuilder  0.280225
    ExtUtils::Command   7.18    
    ExtUtils::Install   2.04    
    ExtUtils::MakeMaker 7.18    
    ExtUtils::Manifest  1.70    
    ExtUtils::ParseXS   3.31    
    File::Spec          3.63    
    JSON                2.90    
    JSON::PP            2.27400 
    Module::Build       0.4220  
    Module::Signature   0.79    
    Parse::CPAN::Meta   2.150010
    Test::Harness       3.36    
    Test::More          1.302052
    YAML                1.18    
    YAML::Syck          1.29    
    version             0.9917  


--

Summary of my perl5 (revision 5 version 24 subversion 0) configuration:
   
  Platform:
    osname=linux, osvers=3.16.0-4-amd64, archname=x86_64-linux
    uname='linux eserte 3.16.0-4-amd64 #1 smp debian 3.16.7-ckt25-2 (2016-04-08) x86_64 gnulinux '
    config_args='-ds -e -Dprefix=/opt/perl-5.24.0 -Dcf_email=srezic@cpan.org'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
    optimize='-O2',
    cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
    ccversion='', gccversion='4.9.2', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
    libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/4.9/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
    libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
    perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
    libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.19'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_COPY_ON_WRITE
                        PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
                        PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
                        USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
                        USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
                        USE_PERLIO USE_PERL_ATOF
  Built under linux
  Compiled at May  9 2016 17:35:52
  %ENV:
    PERL5LIB="/home/cpansand/.cpan/build/2016091621/Bio-BPWrapper-1.11-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-BPWrapper-1.11-1/blib/lib:/home/cpansand/.cpan/build/2016091621/Bio-ASN1-EntrezGene-1.72-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-ASN1-EntrezGene-1.72-1/blib/lib:/home/cpansand/.cpan/build/2016091621/App-RecordStream-Bio-0.18-1/blib/arch:/home/cpansand/.cpan/build/2016091621/App-RecordStream-Bio-0.18-1/blib/lib:/home/cpansand/.cpan/build/2016091621/App-RecordStream-4.0.20-0/blib/arch:/home/cpansand/.cpan/build/2016091621/App-RecordStream-4.0.20-0/blib/lib:/home/cpansand/.cpan/build/2016091621/Module-Versions-Report-1.06-0/blib/arch:/home/cpansand/.cpan/build/2016091621/Module-Versions-Report-1.06-0/blib/lib:/home/cpansand/.cpan/build/2016091621/Catalyst-View-Bio-SeqIO-0.02-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Catalyst-View-Bio-SeqIO-0.02-1/blib/lib:/home/cpansand/.cpan/build/2016091621/Catalyst-Plugin-AutoCRUD-2.200002-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Catalyst-Plugin-AutoCRUD-2.200002-1/blib/lib:/home/cpansand/.cpan/build/2016091621/Bio-GMOD-Blast-Graph-0.06-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-GMOD-Blast-Graph-0.06-1/blib/lib:/home/cpansand/.cpan/build/2016091621/Bio-Chado-Schema-0.20000-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-Chado-Schema-0.20000-1/blib/lib:/home/cpansand/.cpan/build/2016091621/DBIx-Class-Tree-NestedSet-0.10-0/blib/arch:/home/cpansand/.cpan/build/2016091621/DBIx-Class-Tree-NestedSet-0.10-0/blib/lib:/home/cpansand/.cpan/build/2016091621/Bio-BLAST-0.4-1/blib/arch:/home/cpansand/.cpan/build/2016091621/Bio-BLAST-0.4-1/blib/lib"
    PERL5OPT=""
    PERL5_CPANPLUS_IS_RUNNING="13796"
    PERL5_CPAN_IS_RUNNING="13796"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="13671,13796"
    PERLDOC="-MPod::Perldoc::ToTextOverstrike"
    PERL_BATCH="yes"
    PERL_CANARY_STABILITY_NOPROMPT="1"
    PERL_CPAN_REPORTER_CONFIG="/run/user/1023/cpansmoker/2016091621/cpanreporter_004_config.ini"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
    PERL_USE_UNSAFE_INC="1"
  @INC:
    /home/cpansand/.cpan/build/2016091621/Bio-BPWrapper-1.11-1/blib/arch
    /home/cpansand/.cpan/build/2016091621/Bio-BPWrapper-1.11-1/blib/lib
    /home/cpansand/.cpan/build/2016091621/Bio-ASN1-EntrezGene-1.72-1/blib/arch
    /home/cpansand/.cpan/build/2016091621/Bio-ASN1-EntrezGene-1.72-1/blib/lib
    /home/cpansand/.cpan/build/2016091621/App-RecordStream-Bio-0.18-1/blib/arch
    /home/cpansand/.cpan/build/2016091621/App-RecordStream-Bio-0.18-1/blib/lib
    /home/cpansand/.cpan/build/2016091621/App-RecordStream-4.0.20-0/blib/arch
    /home/cpansand/.cpan/build/2016091621/App-RecordStream-4.0.20-0/blib/lib
    /home/cpansand/.cpan/build/2016091621/Module-Versions-Report-1.06-0/blib/arch
    /home/cpansand/.cpan/build/2016091621/Module-Versions-Report-1.06-0/blib/lib
    /home/cpansand/.cpan/build/2016091621/Catalyst-View-Bio-SeqIO-0.02-1/blib/arch
    /home/cpansand/.cpan/build/2016091621/Catalyst-View-Bio-SeqIO-0.02-1/blib/lib
    /home/cpansand/.cpan/build/2016091621/Catalyst-Plugin-AutoCRUD-2.200002-1/blib/arch
    /home/cpansand/.cpan/build/2016091621/Catalyst-Plugin-AutoCRUD-2.200002-1/blib/lib
    /home/cpansand/.cpan/build/2016091621/Bio-GMOD-Blast-Graph-0.06-1/blib/arch
    /home/cpansand/.cpan/build/2016091621/Bio-GMOD-Blast-Graph-0.06-1/blib/lib
    /home/cpansand/.cpan/build/2016091621/Bio-Chado-Schema-0.20000-1/blib/arch
    /home/cpansand/.cpan/build/2016091621/Bio-Chado-Schema-0.20000-1/blib/lib
    /home/cpansand/.cpan/build/2016091621/DBIx-Class-Tree-NestedSet-0.10-0/blib/arch
    /home/cpansand/.cpan/build/2016091621/DBIx-Class-Tree-NestedSet-0.10-0/blib/lib
    /home/cpansand/.cpan/build/2016091621/Bio-BLAST-0.4-1/blib/arch
    /home/cpansand/.cpan/build/2016091621/Bio-BLAST-0.4-1/blib/lib
    /opt/perl-5.24.0/lib/site_perl/5.24.0/x86_64-linux
    /opt/perl-5.24.0/lib/site_perl/5.24.0
    /opt/perl-5.24.0/lib/5.24.0/x86_64-linux
    /opt/perl-5.24.0/lib/5.24.0
    .