Bio-Biblio v1.70 Perl 5 v5.27.4 x86_64-linux
- Status
- Fail
- From
- Slaven Rezić (SREZIC)
- Dist
-
Bio-Biblio v1.70
- Platform
- Perl 5 v5.27.4 x86_64-linux
- Date
- 2017-09-23 15:36:16
- ID
- f01e48c8-a074-11e7-9904-a4e93f426b07
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear carandraug,
This is a computer-generated report for Bio-Biblio-1.70
on perl 5.27.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/opt/perl-5.27.4/bin/perl5.27.4" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ............ ok
t/Biblio.t ................ ok
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: WebDBSeqI Request Error:
HTTP/1.1 500 Internal Server Error
Connection: close
Date: Sat, 23 Sep 2017 09:50:26 GMT
Content-Length: 10633
Content-Type: text/html
Client-Date: Sat, 23 Sep 2017 09:50:27 GMT
Client-Peer: 193.62.193.80:80
Client-Response-Num: 1
Link: <//www.ebi.ac.uk/web_guidelines/css/compliance/develop/boilerplate-style.css>; rel="stylesheet"
Link: <//www.ebi.ac.uk/web_guidelines/css/compliance/develop/ebi-global.css>; media="screen"; rel="stylesheet"; type="text/css"
Link: <//www.ebi.ac.uk/web_guidelines/css/compliance/develop/ebi-visual.css>; media="screen"; rel="stylesheet"; type="text/css"
Link: <//www.ebi.ac.uk/web_guidelines/css/compliance/develop/984-24-col-fluid.css>; media="screen"; rel="stylesheet"; type="text/css"
Link: <//www.ebi.ac.uk/web_guidelines/css/compliance/develop/embl-petrol-colours.css>; media="screen"; rel="stylesheet"; type="text/css"
Title: Server error < EMBL-EBI
X-Meta-Author: EMBL-EBI
X-Meta-Charset: utf-8
X-Meta-Description: EMBL-EBI
X-Meta-Keywords: bioinformatics, europe, institute
X-Meta-Viewport: width=device-width,initial-scale=1
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<body class="level1 page-error"><!-- add any of your classes or IDs -->
<div id="skip-to">
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<!--This has to be one line and no newline characters-->
<a href="//www.ebi.ac.uk/" title="Go to the EMBL-EBI homepage"><img src="//www.ebi.ac.uk/web_guidelines/images/logos/EMBL-EBI/EMBL_EBI_Logo_white.png" alt="EMBL European Bioinformatics Institute"></a>
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<!-- set active class as appropriate -->
<li id="services" class=" first "><a href="//www.ebi.ac.uk/services" title="Services">Services</a></li>
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</ul>
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<!-- NB: for additional title style patterns, see http://frontier.ebi.ac.uk/web/style/patterns -->
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<h1><a href="/" title="Back to Server error homepage">Server error</a></h1>
</div>
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<!-- Example layout containers -->
<section>
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<div>
<h2 class="alert">Something has gone wrong with our web server</h2>
<p>Our web server says this is a <span class="alert">500 internal server error</span>: the request cannot be carried out by the server.<br />
This problem means that the service you are trying to access is currently unavailable. We're very sorry.</p>
<p>Please try again but if it keeps happening, you can <a fix="h-" href="//www.ebi.ac.uk/support">contact us</a> and we will try to help you.</p>
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STACK: Error::throw
STACK: Bio::Root::Root::throw /opt/perl-5.27.4/lib/site_perl/5.27.4/Bio/Root/Root.pm:447
STACK: Bio::DB::WebDBSeqI::_request /opt/perl-5.27.4/lib/site_perl/5.27.4/Bio/DB/WebDBSeqI.pm:704
STACK: Bio::DB::Biblio::biofetch::get_seq_stream /home/cpansand/.cpan/build/2017092309/Bio-Biblio-1.70-0/blib/lib/Bio/DB/Biblio/biofetch.pm:87
STACK: Bio::DB::DBFetch::get_Stream_by_id /opt/perl-5.27.4/lib/site_perl/5.27.4/Bio/DB/DBFetch.pm:204
STACK: Bio::DB::Biblio::biofetch::get_by_id /home/cpansand/.cpan/build/2017092309/Bio-Biblio-1.70-0/blib/lib/Bio/DB/Biblio/biofetch.pm:55
STACK: t/biofetch.t:15
-----------------------------------------------------------
# Looks like your test exited with 255 just after 2.
t/biofetch.t ..............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/10 subtests
t/eutils.t ................ ok
t/References.t ............ ok
t/release-eol.t ........... skipped: these tests are for release candidate testing
t/release-mojibake.t ...... skipped: these tests are for release candidate testing
t/release-no-tabs.t ....... skipped: these tests are for release candidate testing
t/release-pod-coverage.t .. skipped: these tests are for release candidate testing
t/release-pod-syntax.t .... skipped: these tests are for release candidate testing
Test Summary Report
-------------------
t/biofetch.t (Wstat: 65280 Tests: 2 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 10 tests but ran 2.
Files=10, Tests=601, 14 wallclock secs ( 0.08 usr 0.06 sys + 3.45 cusr 1.01 csys = 4.60 CPU)
Result: FAIL
Failed 1/10 test programs. 0/601 subtests failed.
Makefile:1037: die Regel für Ziel âÂÂtest_dynamicâ scheiterte
make: *** [test_dynamic] Fehler 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- ---- --------
Bio::Annotation::DBLink 0 1.007002
Bio::DB::DBFetch 0 0
Bio::Root::IO 0 0
Bio::Root::Root 0 1.007002
Bio::Root::RootI 0 0
Data::Dumper 0 2.161
Getopt::Std 0 1.12
LWP::Simple 0 6.26
parent 0 0.236
SOAP::Lite 0 1.22
strict 0 1.11
Symbol 0 1.08
URI::Escape 0 3.31
utf8 0 1.20
vars 0 1.03
warnings 0 1.37
XML::Parser 0 2.44
XML::Twig 0 3.52
build_requires:
Module Need Have
----------------------- ---- --------
File::Find 0 1.34
File::Spec 0 3.62
File::Temp 0 0.2304
Test::More 0 1.302096
configure_requires:
Module Need Have
----------------------- ---- --------
ExtUtils::MakeMaker 6.30 7.30
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = C
LC_ALL = de_DE.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 18487
PERL5_CPAN_IS_RUNNING = 18487
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 27773,18487
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2017092303/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_PARALLEL_SMOKER = yes
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2017092303
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.27.4/bin/perl5.27.4
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.150010
Cwd 3.62
ExtUtils::CBuilder 0.280226
ExtUtils::Command 7.30
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.35
File::Spec 3.62
JSON 2.94
JSON::PP 2.94
Module::Build 0.4224
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.39
Test::More 1.302096
YAML 1.23
YAML::Syck 1.30
version 0.9918
--
Summary of my perl5 (revision 5 version 27 subversion 4) configuration:
Platform:
osname=linux
osvers=4.9.0-3-amd64
archname=x86_64-linux
uname='linux debian9 4.9.0-3-amd64 #1 smp debian 4.9.30-2+deb9u3 (2017-08-06) x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.27.4 -Dusedevel -Dusemallocwrap=no -Dcf_email=srezic@cpan.org'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2'
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='6.3.0 20170516'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_DEVEL
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Sep 20 2017 22:26:09
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="18487"
PERL5_CPAN_IS_RUNNING="18487"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="27773,18487"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2017092303/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_PARALLEL_SMOKER="yes"
PERL_USE_UNSAFE_INC="1"
@INC:
/opt/perl-5.27.4/lib/site_perl/5.27.4/x86_64-linux
/opt/perl-5.27.4/lib/site_perl/5.27.4
/opt/perl-5.27.4/lib/5.27.4/x86_64-linux
/opt/perl-5.27.4/lib/5.27.4
.