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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL BioX-SeqUtils-Promoter-0.1.1 v5.24.0 GNU/Linux
Date: 2017-02-04T15:38:18Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Charles Stephen Embry,
This is a computer-generated report for BioX-SeqUtils-Promoter-0.1.1
on perl 5.24.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Testing BioX::SeqUtils::Promoter 0.1.1
t/00.load.t ....... ok
t/10.length.t ..... ok
# Failed test 'use BioX::SeqUtils::Promoter::Alignment;'
# at t/10.load.t line 10.
# Tried to use 'BioX::SeqUtils::Promoter::Alignment'.
# Error: Can't locate DBIx/MySperql.pm in @INC (you may need to install the DBIx::MySperql module) (@INC contains: /home/cpansand/.cpan/build/2017020412/BioX-SeqUtils-Promoter-0/blib/lib /home/cpansand/.cpan/build/2017020412/BioX-SeqUtils-Promoter-0/blib/arch /opt/perl-5.24.0/lib/site_perl/5.24.0/x86_64-linux /opt/perl-5.24.0/lib/site_perl/5.24.0 /opt/perl-5.24.0/lib/5.24.0/x86_64-linux /opt/perl-5.24.0/lib/5.24.0 .) at /home/cpansand/.cpan/build/2017020412/BioX-SeqUtils-Promoter-0/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2017020412/BioX-SeqUtils-Promoter-0/blib/lib/BioX/SeqUtils/Promoter/Annotations/Consensus.pm line 13.
# Compilation failed in require at /home/cpansand/.cpan/build/2017020412/BioX-SeqUtils-Promoter-0/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2017020412/BioX-SeqUtils-Promoter-0/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 12.
# Compilation failed in require at t/10.load.t line 10.
# BEGIN failed--compilation aborted at t/10.load.t line 10.
# Failed test 'use BioX::SeqUtils::Promoter::Annotations::Consensus;'
# at t/10.load.t line 34.
# Tried to use 'BioX::SeqUtils::Promoter::Annotations::Consensus'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Annotations/Consensus.pm aborted.
# Compilation failed in require at t/10.load.t line 34.
# BEGIN failed--compilation aborted at t/10.load.t line 34.
# Failed test 'use BioX::SeqUtils::Promoter::SaveTypes::RImage;'
# at t/10.load.t line 58.
# Tried to use 'BioX::SeqUtils::Promoter::SaveTypes::RImage'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Alignment.pm aborted.
# Compilation failed in require at /home/cpansand/.cpan/build/2017020412/BioX-SeqUtils-Promoter-0/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2017020412/BioX-SeqUtils-Promoter-0/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# Compilation failed in require at t/10.load.t line 58.
# BEGIN failed--compilation aborted at t/10.load.t line 58.
# Testing BioX::SeqUtils::Promoter 0.1.1
# Testing BioX::SeqUtils::Promoter::Alignment
# Testing BioX::SeqUtils::Promoter::Annotations 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::CG 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Consensus
# Testing BioX::SeqUtils::Promoter::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes::RImage
# Testing BioX::SeqUtils::Promoter::SaveTypes::Text 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequence 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequences 0.1.1
# Looks like you failed 3 tests of 13.
t/10.load.t .......
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/13 subtests
t/10.sequence.t ... ok
t/10.sequences.t ..
Failed 1/2 subtests
t/11.new.t ........ ok
Test Summary Report
-------------------
t/10.load.t (Wstat: 768 Tests: 13 Failed: 3)
Failed tests: 2, 6, 10
Non-zero exit status: 3
t/10.sequences.t (Wstat: 0 Tests: 1 Failed: 0)
Parse errors: Tests out of sequence. Found (2) but expected (1)
Bad plan. You planned 2 tests but ran 1.
Files=6, Tests=22, 1 wallclock secs ( 0.04 usr 0.03 sys + 0.56 cusr 0.12 csys = 0.75 CPU)
Result: FAIL
Failed 2/6 test programs. 3/22 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------- ---- --------
Test::More 0 1.302075
version 0 0.9917
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = de_DE.utf8
LANGUAGE = de_DE.utf8
LC_ALL = de_DE.utf8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 27726
PERL5_CPAN_IS_RUNNING = 27726
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 17212,27726
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1001/2017020400/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
SHELL = /bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1001/2017020400
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.24.0/bin/perl5.24.0
$UID/$EUID = 1001 / 1001
$GID = 1001 1001
$EGID = 1001 1001
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.14
CPAN::Meta 2.150010
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4220
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.36
Test::More 1.302075
YAML 1.21
YAML::Syck 1.29
version 0.9917
--
Summary of my perl5 (revision 5 version 24 subversion 0) configuration:
Platform:
osname=linux, osvers=3.10.0-042stab120.6, archname=x86_64-linux
uname='linux h1980015.stratoserver.net 3.10.0-042stab120.6 #1 smp thu oct 27 16:59:03 msk 2016 x86_64 x86_64 x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.24.0 -Dcf_email=srezic@cpan.org'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
optimize='-O2',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='4.8.5 20150623 (Red Hat 4.8.5-11)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib /lib/../lib64 /usr/lib/../lib64 /lib /lib64 /usr/lib64 /usr/local/lib64
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.17.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.17'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
USE_PERLIO USE_PERL_ATOF
Built under linux
Compiled at Jan 22 2017 10:44:09
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="27726"
PERL5_CPAN_IS_RUNNING="27726"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="17212,27726"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1001/2017020400/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
@INC:
/opt/perl-5.24.0/lib/site_perl/5.24.0/x86_64-linux
/opt/perl-5.24.0/lib/site_perl/5.24.0
/opt/perl-5.24.0/lib/5.24.0/x86_64-linux
/opt/perl-5.24.0/lib/5.24.0
.