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From: metabase:user:320bfe00-2aae-11df-837a-5e0a49663a4f
Subject: FAIL go-perl-0.15 v5.23.8 GNU/Linux
Date: 2016-02-02T14:48:11Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for go-perl-0.15
on perl 5.23.8, created by CPAN-Reporter-1.2015.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/tmp/basesmoker-reloperl-NI9a/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.28093.llm.obo-1.xml > TMP.28093.llm.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_chadoxml.xsl", "TMP.28093.llm.obo-1.xml", "TMP.28093.llm.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x2cf17c8), "./t/data/llm.obo") called at t/t170chadoxml.t line 45
t/t170chadoxml.t .........
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 9/9 subtests
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.28095.llm2.obo-1.xml > TMP.28095.llm2.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_chadoxml.xsl", "TMP.28095.llm2.obo-1.xml", "TMP.28095.llm2.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0xef5778), "./t/data/llm2.obo") called at t/t175chadoxml_oborel.t line 45
t/t175chadoxml_oborel.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 9/9 subtests
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.28103.go-with-local-id-mapping.obo-1.xml > TMP.28103.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_chadoxml.xsl", "TMP.28103.go-with-local-id-mapping.obo-1.xml", "TMP.28103.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x26eb5a0), "./t/data/go-with-local-id-mapping.obo") called at t/t260oborel_in_chado.t line 44
t/t260oborel_in_chado.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 6/6 subtests
sh: 1: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.28105.go-with-local-id-mapping.obo-1.xml > TMP.28105.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_owl.xsl", "TMP.28105.go-with-local-id-mapping.obo-1.xml", "TMP.28105.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x186f768), "./t/data/go-with-local-id-mapping.obo") called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t170chadoxml.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t175chadoxml_oborel.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t260oborel_in_chado.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 6 tests but ran 0.
t/t270oborel_in_owl.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=112, 3 wallclock secs ( 0.08 usr 0.09 sys + 2.23 cusr 0.24 csys = 2.64 CPU)
Result: FAIL
Failed 4/24 test programs. 0/112 subtests failed.
Makefile:1557: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -------
Data::Dumper 0 2.160
Data::Stag 0.07 0.14
build_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 7.10_01
configure_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 7.10_01
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = C
PATH = /usr/lib/ccache:/home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 9805
PERL5_CPAN_IS_RUNNING = 9805
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /tmp/basesmoker-reloperl-NI9a/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.12
CPAN::Meta 2.150005
Cwd 3.62
ExtUtils::CBuilder 0.280225
ExtUtils::Command 7.10
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.10_01
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.31
File::Spec 3.62
JSON 2.90
JSON::PP 2.27300
Module::Build 0.4216
Module::Signature 0.79
Parse::CPAN::Meta 1.4417
Test::Harness 3.36
Test::More 1.001014
YAML 1.15
YAML::Syck 1.29
version 0.9912
--
Summary of my perl5 (revision 5 version 23 subversion 8) configuration:
Derived from: 1a3756de64921fe45a9e00f0c8bba3c75e843bca
Platform:
osname=linux, osvers=4.3.0-1-amd64, archname=x86_64-linux
uname='linux k93x64sid 4.3.0-1-amd64 #1 smp debian 4.3.3-7 (2016-01-19) x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/host/k93x64sid/v5.23.7-66-g1a3756d/29a8 -Dmyhostname=k93x64sid -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dlibswanted=cl pthread socket inet nsl gdbm dbm malloc dl ld sun m crypt sec util c cposix posix ucb BSD gdbm_compat -Uuseithreads -Uuselongdouble -DDEBUGGING=-g'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
optimize='-O2 -g',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='5.3.1 20160121', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/5/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.21.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.21'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_USE_DEVEL USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
USE_PERL_ATOF
Locally applied patches:
uncommitted-changes
Devel::PatchPerl 1.40
Built under linux
Compiled at Feb 1 2016 22:32:21
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="9805"
PERL5_CPAN_IS_RUNNING="9805"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/sand/src/perl/repoperls/installed-perls/host/k93x64sid/v5.23.7-66-g1a3756d/29a8/lib/site_perl/5.23.8/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93x64sid/v5.23.7-66-g1a3756d/29a8/lib/site_perl/5.23.8
/home/sand/src/perl/repoperls/installed-perls/host/k93x64sid/v5.23.7-66-g1a3756d/29a8/lib/5.23.8/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93x64sid/v5.23.7-66-g1a3756d/29a8/lib/5.23.8
.