Bio-SearchIO-blastxml v1.70 Perl 5 v5.10.1 darwin-thread-multi-2level
- Status
- Pass
- From
- Nigel Horne
- Dist
-
Bio-SearchIO-blastxml v1.70
- Platform
- Perl 5 v5.10.1 darwin-thread-multi-2level
- Date
- 2018-01-05 01:30:17
- ID
- fc8e0b54-f1b7-11e7-a429-dd1fbaf9c033
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for Bio-SearchIO-blastxml-1.70
on perl 5.10.1, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/sw/bin/make test':
PERL_DL_NONLAZY=1 "/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/SearchIO/*.t
t/author-eol.t ........... skipped: these tests are for testing by the author
t/author-mojibake.t ...... skipped: these tests are for testing by the author
t/author-no-tabs.t ....... skipped: these tests are for testing by the author
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author
t/00-compile.t ........... ok
t/SearchIO/blastxml.t .... ok
All tests successful.
Files=7, Tests=394, 0 wallclock secs ( 0.05 usr 0.02 sys + 0.48 cusr 0.14 csys = 0.69 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------------------------------- ----- --------
base 0 2.18
Bio::Root::Root 0 1.007002
Bio::SearchIO 0 0
Bio::SearchIO::IteratedSearchResultEventBuilder 0 0
IO::File 0 1.14
perl 5.006 5.010001
strict 0 1.04
Time::HiRes 0 1.9726
XML::SAX 0 0.99
XML::SAX::Base 0 1.08
build_requires:
Module Need Have
----------------------------------------------- ----- --------
Bio::Root::Test 0 0
ExtUtils::MakeMaker 0 7.30
File::Spec 0 3.2701
IO::Handle 0 1.28
IPC::Open3 0 1.04
lib 0 0.63
Test::More 0 1.302120
warnings 0 1.06
configure_requires:
Module Need Have
----------------------------------------------- ----- --------
ExtUtils::MakeMaker 0 7.30
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = c:j3
LANG = en_US.UTF-8
LC_ALL = POSIX
PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/bin:src/njh/smoker/bin:/Users/hornenj/bin:/usr/bin:/bin:/usr/X11R6/bin:/sw/bin
PERL5LIB = /Users/hornenj/.cpan/build/BioPerl-1.007002-10/blib/arch:/Users/hornenj/.cpan/build/BioPerl-1.007002-10/blib/lib:/Users/hornenj/.cpan/build/Data-Stag-0.14-10/blib/arch:/Users/hornenj/.cpan/build/Data-Stag-0.14-10/blib/lib:/Users/hornenj/.cpan/build/Module-Build-0.4224-0/blib/arch:/Users/hornenj/.cpan/build/Module-Build-0.4224-0/blib/lib:/Users/hornenj/.cpan/build/Convert-Base64-0.001-10/blib/arch:/Users/hornenj/.cpan/build/Convert-Base64-0.001-10/blib/lib:/Users/hornenj/.cpan/build/Geo-WeatherNWS-1.054-10/blib/arch:/Users/hornenj/.cpan/build/Geo-WeatherNWS-1.054-10/blib/lib:/Users/hornenj/.cpan/build/Perl-Critic-Policy-Moo-ProhibitMakeImmutable-0.02-10/blib/arch:/Users/hornenj/.cpan/build/Perl-Critic-Policy-Moo-ProhibitMakeImmutable-0.02-10/blib/lib:/Users/hornenj/.cpan/build/HTML-Valid-0.07-10/blib/arch:/Users/hornenj/.cpan/build/HTML-Valid-0.07-10/blib/lib:/Users/hornenj/.cpan/build/JSON-Parse-0.55-10/blib/arch:/Users/hornenj/.cpan/build/JSON-Parse-0.55-10/blib/lib:/Users/hornenj/.cpan/build/Gzip-Faster-0.21-10/blib/arch:/Users/hornenj/.cpan/build/Gzip-Faster-0.21-10/blib/lib:/Users/hornenj/.cpan/build/AVLTree-0.0.6-10/blib/arch:/Users/hornenj/.cpan/build/AVLTree-0.0.6-10/blib/lib:/Users/hornenj/.cpan/build/Digest-PBKDF2-0.013-10/blib/arch:/Users/hornenj/.cpan/build/Digest-PBKDF2-0.013-10/blib/lib:/Users/hornenj/.cpan/build/Test-Simple-1.302120-4/blib/arch:/Users/hornenj/.cpan/build/Test-Simple-1.302120-4/blib/lib:/Users/hornenj/.cpan/build/Crypt-PBKDF2-0.161520-10/blib/arch:/Users/hornenj/.cpan/build/Crypt-PBKDF2-0.161520-10/blib/lib:/Users/hornenj/.cpan/build/Digest-SHA3-1.03-10/blib/arch:/Users/hornenj/.cpan/build/Digest-SHA3-1.03-10/blib/lib:/Users/hornenj/.cpan/build/Test-Portability-Files-0.09-10/blib/arch:/Users/hornenj/.cpan/build/Test-Portability-Files-0.09-10/blib/lib:/Users/hornenj/.cpan/build/Test-Portability-Files-0.08-10/blib/arch:/Users/hornenj/.cpan/build/Test-Portability-Files-0.08-10/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 3674
PERL5_CPAN_IS_RUNNING = 3674
PERLBREW_BASHRC_VERSION = 0.80
PERLBREW_HOME = /Users/hornenj/.perlbrew
PERLBREW_MANPATH = /Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/man
PERLBREW_PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/bin
PERLBREW_PERL = perl-5.10.1
PERLBREW_ROOT = /Users/hornenj/perl5/perlbrew
PERLBREW_VERSION = 0.80
SHELL = /bin/bash
TERM = xterm-256color
TMPDIR = /var/folders/pz/pd7y1qjs6s3cbk170cw50fjc000c61/T/
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/bin/perl
$UID/$EUID = 12481 / 12481
$GID = 14 14 5344 37191 527 12 62 204 399 206 37223 241 223
$EGID = 14 14 5344 37191 527 12 62 204 399 206 37223 241 223
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.150005
Cwd 3.2701
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.30
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.2701
JSON 2.93
JSON::PP 2.27400
Module::Build 0.4224
Module::Signature n/a
Parse::CPAN::Meta 1.4422
Test::Harness 3.36
Test::More 1.302120
YAML 1.24
YAML::Syck 1.30
version 0.9912
--
Summary of my perl5 (revision 5 version 10 subversion 1) configuration:
Platform:
osname=darwin, osvers=12.5.0, archname=darwin-thread-multi-2level
uname='darwin ncbimac2008.ncbi.nlm.nih.gov 12.5.0 darwin kernel version 12.5.0: sun sep 29 13:33:47 pdt 2013; root:xnu-2050.48.12~1release_x86_64 x86_64 '
config_args='-Duseithreads -Dusemultiplicity -Dinstallprefix=/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1 -Dprefix=/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1 -de -Accflags=-O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse -mmmx -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fassociative-math -Acc=clang'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc=' clang', ccflags ='-fno-common -DPERL_DARWIN -no-cpp-precomp -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse -mmmx -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fassociative-math -fno-strict-aliasing -I/usr/local/include',
optimize='-O3',
cppflags='-no-cpp-precomp -fno-common -DPERL_DARWIN -no-cpp-precomp -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse -mmmx -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fassociative-math -fno-strict-aliasing -I/usr/local/include'
ccversion='', gccversion='4.2.1 Compatible Apple LLVM 4.2 (clang-425.0.24)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='env MACOSX_DEPLOYMENT_TARGET=10.3 cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib
libs=-ldbm -ldl -lm -lutil -lc
perllibs=-ldl -lm -lutil -lc
libc=, so=dylib, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags=' -bundle -undefined dynamic_lookup -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP USE_64_BIT_ALL
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_PERLIO USE_REENTRANT_API
Built under darwin
Compiled at Apr 1 2014 09:55:44
%ENV:
PERL5LIB="/Users/hornenj/.cpan/build/BioPerl-1.007002-10/blib/arch:/Users/hornenj/.cpan/build/BioPerl-1.007002-10/blib/lib:/Users/hornenj/.cpan/build/Data-Stag-0.14-10/blib/arch:/Users/hornenj/.cpan/build/Data-Stag-0.14-10/blib/lib:/Users/hornenj/.cpan/build/Module-Build-0.4224-0/blib/arch:/Users/hornenj/.cpan/build/Module-Build-0.4224-0/blib/lib:/Users/hornenj/.cpan/build/Convert-Base64-0.001-10/blib/arch:/Users/hornenj/.cpan/build/Convert-Base64-0.001-10/blib/lib:/Users/hornenj/.cpan/build/Geo-WeatherNWS-1.054-10/blib/arch:/Users/hornenj/.cpan/build/Geo-WeatherNWS-1.054-10/blib/lib:/Users/hornenj/.cpan/build/Perl-Critic-Policy-Moo-ProhibitMakeImmutable-0.02-10/blib/arch:/Users/hornenj/.cpan/build/Perl-Critic-Policy-Moo-ProhibitMakeImmutable-0.02-10/blib/lib:/Users/hornenj/.cpan/build/HTML-Valid-0.07-10/blib/arch:/Users/hornenj/.cpan/build/HTML-Valid-0.07-10/blib/lib:/Users/hornenj/.cpan/build/JSON-Parse-0.55-10/blib/arch:/Users/hornenj/.cpan/build/JSON-Parse-0.55-10/blib/lib:/Users/hornenj/.cpan/build/Gzip-Faster-0.21-10/blib/arch:/Users/hornenj/.cpan/build/Gzip-Faster-0.21-10/blib/lib:/Users/hornenj/.cpan/build/AVLTree-0.0.6-10/blib/arch:/Users/hornenj/.cpan/build/AVLTree-0.0.6-10/blib/lib:/Users/hornenj/.cpan/build/Digest-PBKDF2-0.013-10/blib/arch:/Users/hornenj/.cpan/build/Digest-PBKDF2-0.013-10/blib/lib:/Users/hornenj/.cpan/build/Test-Simple-1.302120-4/blib/arch:/Users/hornenj/.cpan/build/Test-Simple-1.302120-4/blib/lib:/Users/hornenj/.cpan/build/Crypt-PBKDF2-0.161520-10/blib/arch:/Users/hornenj/.cpan/build/Crypt-PBKDF2-0.161520-10/blib/lib:/Users/hornenj/.cpan/build/Digest-SHA3-1.03-10/blib/arch:/Users/hornenj/.cpan/build/Digest-SHA3-1.03-10/blib/lib:/Users/hornenj/.cpan/build/Test-Portability-Files-0.09-10/blib/arch:/Users/hornenj/.cpan/build/Test-Portability-Files-0.09-10/blib/lib:/Users/hornenj/.cpan/build/Test-Portability-Files-0.08-10/blib/arch:/Users/hornenj/.cpan/build/Test-Portability-Files-0.08-10/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="3674"
PERL5_CPAN_IS_RUNNING="3674"
PERLBREW_BASHRC_VERSION="0.80"
PERLBREW_HOME="/Users/hornenj/.perlbrew"
PERLBREW_MANPATH="/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/man"
PERLBREW_PATH="/Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/bin"
PERLBREW_PERL="perl-5.10.1"
PERLBREW_ROOT="/Users/hornenj/perl5/perlbrew"
PERLBREW_VERSION="0.80"
@INC:
/Users/hornenj/.cpan/build/BioPerl-1.007002-10/blib/arch
/Users/hornenj/.cpan/build/BioPerl-1.007002-10/blib/lib
/Users/hornenj/.cpan/build/Data-Stag-0.14-10/blib/arch
/Users/hornenj/.cpan/build/Data-Stag-0.14-10/blib/lib
/Users/hornenj/.cpan/build/Module-Build-0.4224-0/blib/arch
/Users/hornenj/.cpan/build/Module-Build-0.4224-0/blib/lib
/Users/hornenj/.cpan/build/Convert-Base64-0.001-10/blib/arch
/Users/hornenj/.cpan/build/Convert-Base64-0.001-10/blib/lib
/Users/hornenj/.cpan/build/Geo-WeatherNWS-1.054-10/blib/arch
/Users/hornenj/.cpan/build/Geo-WeatherNWS-1.054-10/blib/lib
/Users/hornenj/.cpan/build/Perl-Critic-Policy-Moo-ProhibitMakeImmutable-0.02-10/blib/arch
/Users/hornenj/.cpan/build/Perl-Critic-Policy-Moo-ProhibitMakeImmutable-0.02-10/blib/lib
/Users/hornenj/.cpan/build/HTML-Valid-0.07-10/blib/arch
/Users/hornenj/.cpan/build/HTML-Valid-0.07-10/blib/lib
/Users/hornenj/.cpan/build/JSON-Parse-0.55-10/blib/arch
/Users/hornenj/.cpan/build/JSON-Parse-0.55-10/blib/lib
/Users/hornenj/.cpan/build/Gzip-Faster-0.21-10/blib/arch
/Users/hornenj/.cpan/build/Gzip-Faster-0.21-10/blib/lib
/Users/hornenj/.cpan/build/AVLTree-0.0.6-10/blib/arch
/Users/hornenj/.cpan/build/AVLTree-0.0.6-10/blib/lib
/Users/hornenj/.cpan/build/Digest-PBKDF2-0.013-10/blib/arch
/Users/hornenj/.cpan/build/Digest-PBKDF2-0.013-10/blib/lib
/Users/hornenj/.cpan/build/Test-Simple-1.302120-4/blib/arch
/Users/hornenj/.cpan/build/Test-Simple-1.302120-4/blib/lib
/Users/hornenj/.cpan/build/Crypt-PBKDF2-0.161520-10/blib/arch
/Users/hornenj/.cpan/build/Crypt-PBKDF2-0.161520-10/blib/lib
/Users/hornenj/.cpan/build/Digest-SHA3-1.03-10/blib/arch
/Users/hornenj/.cpan/build/Digest-SHA3-1.03-10/blib/lib
/Users/hornenj/.cpan/build/Test-Portability-Files-0.09-10/blib/arch
/Users/hornenj/.cpan/build/Test-Portability-Files-0.09-10/blib/lib
/Users/hornenj/.cpan/build/Test-Portability-Files-0.08-10/blib/arch
/Users/hornenj/.cpan/build/Test-Portability-Files-0.08-10/blib/lib
/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/lib/5.10.1/darwin-thread-multi-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/lib/5.10.1
/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/lib/site_perl/5.10.1/darwin-thread-multi-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.10.1/lib/site_perl/5.10.1
.