CLIPSeqTools v1.0.0 Perl 5 v5.36.0 x86_64-linux

Status
Pass
From
Nedzad Hrnjica (NHRNJICA)
Dist
CLIPSeqTools v1.0.0
Platform
Perl 5 v5.36.0 x86_64-linux
Date
2022-08-14T21:28:57
ID
1ac7258a-1c18-11ed-a53e-e61512f29030
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear MNSMAR,

This is a computer-generated report for CLIPSeqTools-1.0.0
on perl 5.36.0, created by App::cpanminus::reporter 0.17 (1.7046).

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '':

Running Makefile.PL
Warning: prerequisite DBD::SQLite 0 not found.
Warning: prerequisite DBI 0 not found.
Warning: prerequisite Data::Table 0 not found.
Warning: prerequisite GenOO v1.4.5 not found.
Warning: prerequisite GenOO::Data::File::FASTQ 0 not found.
Warning: prerequisite GenOO::Data::File::SAM 0 not found.
Warning: prerequisite GenOO::GeneCollection::Factory 0 not found.
Warning: prerequisite GenOO::GenomicRegion 0 not found.
Warning: prerequisite GenOO::RegionCollection::Factory 0 not found.
Warning: prerequisite GenOO::TranscriptCollection::Factory 0 not found.
Warning: prerequisite GenOOx::Data::File::SAMbwa 0 not found.
Warning: prerequisite GenOOx::Data::File::SAMstar 0 not found.
Warning: prerequisite IO::Interactive 0 not found.
Warning: prerequisite Modern::Perl 0 not found.
Warning: prerequisite Moose 0 not found.
Warning: prerequisite MooseX::App 0 not found.
Warning: prerequisite MooseX::App::Command 0 not found.
Warning: prerequisite MooseX::App::Role 0 not found.
Warning: prerequisite MooseX::Getopt 0 not found.
Warning: prerequisite PDL 2.007 not found.
Warning: prerequisite Statistics::R 0 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for CLIPSeqTools
Writing MYMETA.yml and MYMETA.json
-> OK
Checking dependencies from MYMETA.json ...
Checking if you have GenOOx::Data::File::SAMstar 0 ... No
Checking if you have Statistics::R 0 ... No
Checking if you have Data::Dumper 0 ... Yes (2.184)
Checking if you have PDL 2.007 ... No
Checking if you have GenOO::RegionCollection::Factory 0 ... No
Checking if you have File::Spec 0 ... Yes (3.84)
Checking if you have GenOO::GenomicRegion 0 ... No
Checking if you have GenOO::GeneCollection::Factory 0 ... No
Checking if you have autodie 0 ... Yes (2.34)
Checking if you have MooseX::App 0 ... No
Checking if you have GenOO::Data::File::FASTQ 0 ... No
Checking if you have namespace::autoclean 0 ... Yes (0.29)
Checking if you have List::Util 0 ... Yes (1.62)
Checking if you have Data::Table 0 ... No
Checking if you have Modern::Perl 0 ... No
Checking if you have Moose 0 ... No
Checking if you have GenOO v1.4.5 ... No
Checking if you have GenOO::TranscriptCollection::Factory 0 ... No
Checking if you have IO::Interactive 0 ... No
Checking if you have File::Path 0 ... Yes (2.18)
Checking if you have MooseX::App::Command 0 ... No
Checking if you have MooseX::Getopt 0 ... No
Checking if you have DBD::SQLite 0 ... No
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.64)
Checking if you have Try::Tiny 0 ... Yes (0.31)
Checking if you have DBI 0 ... No
Checking if you have GenOOx::Data::File::SAMbwa 0 ... No
Checking if you have GenOO::Data::File::SAM 0 ... No
Checking if you have MooseX::App::Role 0 ... No
==> Found dependencies: GenOOx::Data::File::SAMstar, Statistics::R, PDL, GenOO::RegionCollection::Factory, GenOO::GenomicRegion, GenOO::GeneCollection::Factory, MooseX::App, GenOO::Data::File::FASTQ, Data::Table, Modern::Perl, Moose, GenOO, GenOO::TranscriptCollection::Factory, IO::Interactive, MooseX::App::Command, MooseX::Getopt, DBD::SQLite, DBI, GenOOx::Data::File::SAMbwa, GenOO::Data::File::SAM, MooseX::App::Role
Searching GenOOx::Data::File::SAMstar (0) on cpanmetadb ...
--> Working on GenOOx::Data::File::SAMstar
Fetching http://www.cpan.org/authors/id/M/MN/MNSMAR/GenOOx-Data-File-SAMstar-0.0.3.tar.gz
-> OK
Unpacking GenOOx-Data-File-SAMstar-0.0.3.tar.gz
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.36.0/.cpanm_temp/work/1660511532.1593062/PDL-2.080/IO/Storable'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.36.0/.cpanm_temp/work/1660511532.1593062/PDL-2.080/IO/STL'
PERL_DL_NONLAZY=1 "/home/liveapp/.plenv/versions/5.36.0/bin/perl5.36.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, '../../blib/lib', '../../blib/arch')" t/*.t
t/basic.t .. ok
All tests successful.
Files=1, Tests=3,  0 wallclock secs ( 0.02 usr  0.00 sys +  0.08 cusr  0.02 csys =  0.12 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

runtime:

    Module                               Need   Have      
    ------------------------------------ ------ ----------
    autodie                              0      2.34      
    Data::Dumper                         0      2.184     
    Data::Table                          0      1.78      
    DBD::SQLite                          0      1.70      
    DBI                                  0      1.643     
    File::Path                           0      2.18      
    File::Spec                           0      3.84      
  ! GenOO                                v1.4.5 n/a       
  ! GenOO::Data::File::FASTQ             0      n/a       
  ! GenOO::Data::File::SAM               0      n/a       
  ! GenOO::GeneCollection::Factory       0      n/a       
  ! GenOO::GenomicRegion                 0      n/a       
  ! GenOO::RegionCollection::Factory     0      n/a       
  ! GenOO::TranscriptCollection::Factory 0      n/a       
  ! GenOOx::Data::File::SAMbwa           0      n/a       
  ! GenOOx::Data::File::SAMstar          0      n/a       
    IO::Interactive                      0      1.023     
    List::Util                           0      1.62      
    Modern::Perl                         0      1.20220515
  ! Moose                                0      n/a       
  ! MooseX::App                          0      n/a       
  ! MooseX::App::Command                 0      n/a       
  ! MooseX::App::Role                    0      n/a       
  ! MooseX::Getopt                       0      n/a       
    namespace::autoclean                 0      0.29      
    PDL                                  2.007  2.080     
  ! Statistics::R                        0      n/a       
    Try::Tiny                            0      0.31      

configure:

    Module                               Need   Have      
    ------------------------------------ ------ ----------
    ExtUtils::MakeMaker                  0      7.64      


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    LANG = C.UTF-8
    PATH = /home/liveapp/.plenv/versions/5.36.0/bin:/home/liveapp/.plenv/libexec:/home/liveapp/.plenv/plugins/perl-build/bin:/home/liveapp/.plenv/shims:/home/liveapp/.plenv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
    PERL_CPANM_HOME = /home/liveapp/cpantesters.new/5.36.0/.cpanm_temp
    SHELL = /bin/bash
    TERM = xterm-256color

Perl special variables (and OS-specific diagnostics, for MSWin32):

    EGID = 1001 27 1001
    EUID = 1001
    EXECUTABLE_NAME = /home/liveapp/.plenv/versions/5.36.0/bin/perl5.36.0
    GID = 1001 27 1001
    UID = 1001

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.33    
    CPAN::Meta          2.150010
    Cwd                 3.84    
    ExtUtils::CBuilder  0.280236
    ExtUtils::Command   7.64    
    ExtUtils::Install   2.20    
    ExtUtils::MakeMaker 7.64    
    ExtUtils::Manifest  1.73    
    ExtUtils::ParseXS   3.45    
    File::Spec          3.84    
    JSON                n/a     
    JSON::PP            4.07    
    Module::Build       0.4231  
    Module::Signature   n/a     
    Parse::CPAN::Meta   2.150010
    Test::Harness       3.44    
    Test::More          1.302190
    YAML                n/a     
    YAML::Syck          n/a     
    version             0.9929  


--

Summary of my perl5 (revision 5 version 36 subversion 0) configuration:
   
  Platform:
    osname=linux
    osvers=5.4.0-91-generic
    archname=x86_64-linux
    uname='linux supremeadmin 5.4.0-91-generic #102-ubuntu smp fri nov 5 16:31:28 utc 2021 x86_64 x86_64 x86_64 gnulinux '
    config_args='-Dprefix=/home/liveapp/.plenv/versions/5.36.0 -de -Dversiononly -A'eval:scriptdir=/home/liveapp/.plenv/versions/5.36.0/bin''
    hint=recommended
    useposix=true
    d_sigaction=define
    useithreads=undef
    usemultiplicity=undef
    use64bitint=define
    use64bitall=define
    uselongdouble=undef
    usemymalloc=n
    default_inc_excludes_dot=define
  Compiler:
    cc='cc'
    ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64'
    optimize='-O2'
    cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
    ccversion=''
    gccversion='9.4.0'
    gccosandvers=''
    intsize=4
    longsize=8
    ptrsize=8
    doublesize=8
    byteorder=12345678
    doublekind=3
    d_longlong=define
    longlongsize=8
    d_longdbl=define
    longdblsize=16
    longdblkind=3
    ivtype='long'
    ivsize=8
    nvtype='double'
    nvsize=8
    Off_t='off_t'
    lseeksize=8
    alignbytes=8
    prototype=define
  Linker and Libraries:
    ld='cc'
    ldflags =' -fstack-protector-strong -L/usr/local/lib'
    libpth=/usr/local/lib /usr/lib/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib
    libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
    perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
    libc=libc-2.31.so
    so=so
    useshrplib=false
    libperl=libperl.a
    gnulibc_version='2.31'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs
    dlext=so
    d_dlsymun=undef
    ccdlflags='-Wl,-E'
    cccdlflags='-fPIC'
    lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'


Characteristics of this binary (from libperl): 
  Compile-time options:
    HAS_TIMES
    PERLIO_LAYERS
    PERL_COPY_ON_WRITE
    PERL_DONT_CREATE_GVSV
    PERL_MALLOC_WRAP
    PERL_OP_PARENT
    PERL_PRESERVE_IVUV
    USE_64_BIT_ALL
    USE_64_BIT_INT
    USE_LARGE_FILES
    USE_LOCALE
    USE_LOCALE_COLLATE
    USE_LOCALE_CTYPE
    USE_LOCALE_NUMERIC
    USE_LOCALE_TIME
    USE_PERLIO
    USE_PERL_ATOF
  Built under linux
  Compiled at Aug  8 2022 07:42:02
  %ENV:
    PERL_CPANM_HOME="/home/liveapp/cpantesters.new/5.36.0/.cpanm_temp"
  @INC:
    /home/liveapp/.plenv/versions/5.36.0/lib/perl5/site_perl/5.36.0/x86_64-linux
    /home/liveapp/.plenv/versions/5.36.0/lib/perl5/site_perl/5.36.0
    /home/liveapp/.plenv/versions/5.36.0/lib/perl5/5.36.0/x86_64-linux
    /home/liveapp/.plenv/versions/5.36.0/lib/perl5/5.36.0