CLIPSeqTools v1.0.0 Perl 5 v5.20.0 x86_64-linux

Status
Pass
From
Nedzad Hrnjica (NHRNJICA)
Dist
CLIPSeqTools v1.0.0
Platform
Perl 5 v5.20.0 x86_64-linux
Date
2022-08-14T20:12:25
ID
69d6738e-1c0d-11ed-9a61-5ed90df29030
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear MNSMAR,

This is a computer-generated report for CLIPSeqTools-1.0.0
on perl 5.20.0, created by App::cpanminus::reporter 0.17 (1.7046).

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '':

Running Makefile.PL
Warning: prerequisite DBD::SQLite 0 not found.
Warning: prerequisite DBI 0 not found.
Warning: prerequisite Data::Table 0 not found.
Warning: prerequisite GenOO v1.4.5 not found.
Warning: prerequisite GenOO::Data::File::FASTQ 0 not found.
Warning: prerequisite GenOO::Data::File::SAM 0 not found.
Warning: prerequisite GenOO::GeneCollection::Factory 0 not found.
Warning: prerequisite GenOO::GenomicRegion 0 not found.
Warning: prerequisite GenOO::RegionCollection::Factory 0 not found.
Warning: prerequisite GenOO::TranscriptCollection::Factory 0 not found.
Warning: prerequisite GenOOx::Data::File::SAMbwa 0 not found.
Warning: prerequisite GenOOx::Data::File::SAMstar 0 not found.
Warning: prerequisite IO::Interactive 0 not found.
Warning: prerequisite Modern::Perl 0 not found.
Warning: prerequisite Moose 0 not found.
Warning: prerequisite MooseX::App 0 not found.
Warning: prerequisite MooseX::App::Command 0 not found.
Warning: prerequisite MooseX::App::Role 0 not found.
Warning: prerequisite MooseX::Getopt 0 not found.
Warning: prerequisite PDL 2.007 not found.
Warning: prerequisite Statistics::R 0 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for CLIPSeqTools
Writing MYMETA.yml and MYMETA.json
-> OK
Checking dependencies from MYMETA.json ...
Checking if you have namespace::autoclean 0 ... Yes (0.29)
Checking if you have File::Path 0 ... Yes (2.09)
Checking if you have Data::Dumper 0 ... Yes (2.151)
Checking if you have MooseX::App 0 ... No
Checking if you have GenOOx::Data::File::SAMbwa 0 ... No
Checking if you have MooseX::App::Command 0 ... No
Checking if you have List::Util 0 ... Yes (1.62)
Checking if you have Modern::Perl 0 ... No
Checking if you have GenOO::Data::File::SAM 0 ... No
Checking if you have GenOO::GenomicRegion 0 ... No
Checking if you have GenOO::Data::File::FASTQ 0 ... No
Checking if you have DBI 0 ... No
Checking if you have DBD::SQLite 0 ... No
Checking if you have IO::Interactive 0 ... No
Checking if you have PDL 2.007 ... No
Checking if you have ExtUtils::MakeMaker 0 ... Yes (7.64)
Checking if you have Moose 0 ... No
Checking if you have Data::Table 0 ... No
Checking if you have GenOO::TranscriptCollection::Factory 0 ... No
Checking if you have MooseX::App::Role 0 ... No
Checking if you have File::Spec 0 ... Yes (3.75)
Checking if you have Statistics::R 0 ... No
Checking if you have GenOO::RegionCollection::Factory 0 ... No
Checking if you have GenOOx::Data::File::SAMstar 0 ... No
Checking if you have autodie 0 ... Yes (2.23)
Checking if you have GenOO v1.4.5 ... No
Checking if you have GenOO::GeneCollection::Factory 0 ... No
Checking if you have MooseX::Getopt 0 ... No
Checking if you have Try::Tiny 0 ... Yes (0.31)
==> Found dependencies: MooseX::App, GenOOx::Data::File::SAMbwa, MooseX::App::Command, Modern::Perl, GenOO::Data::File::SAM, GenOO::GenomicRegion, GenOO::Data::File::FASTQ, DBI, DBD::SQLite, IO::Interactive, PDL, Moose, Data::Table, GenOO::TranscriptCollection::Factory, MooseX::App::Role, Statistics::R, GenOO::RegionCollection::Factory, GenOOx::Data::File::SAMstar, GenOO, GenOO::GeneCollection::Factory, MooseX::Getopt
Searching MooseX::App (0) on cpanmetadb ...
--> Working on MooseX::App
Fetching http://www.cpan.org/authors/id/M/MA/MAROS/MooseX-App-1.42.tar.gz
-> OK
Unpacking MooseX-App-1.42.tar.gz
make[1]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/IO'
make[1]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/CallExt'
"/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" -MExtUtils::Command::MM -e 'cp_nonempty' -- CallExt.bs ../../blib/arch/auto/PDL/CallExt/CallExt.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/CallExt'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Compression'
"/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" -MExtUtils::Command::MM -e 'cp_nonempty' -- Compression.bs ../../blib/arch/auto/PDL/Compression/Compression.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Compression'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/FFT'
"/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" -MExtUtils::Command::MM -e 'cp_nonempty' -- FFT.bs ../../blib/arch/auto/PDL/FFT/FFT.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/FFT'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Filter'
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Filter'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Fit'
make[3]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Fit/Gaussian'
"/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" -MExtUtils::Command::MM -e 'cp_nonempty' -- Gaussian.bs ../../../blib/arch/auto/PDL/Fit/Gaussian/Gaussian.bs 644
Manifying 1 pod document
make[3]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Fit/Gaussian'
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Fit'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/GIS'
make[3]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/GIS/Proj'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/GIS/Proj'
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/GIS'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/GSL'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/GSL'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Image2D'
"/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" -MExtUtils::Command::MM -e 'cp_nonempty' -- Image2D.bs ../../blib/arch/auto/PDL/Image2D/Image2D.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Image2D'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/ImageND'
"/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" -MExtUtils::Command::MM -e 'cp_nonempty' -- ImageND.bs ../../blib/arch/auto/PDL/ImageND/ImageND.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/ImageND'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/ImageRGB'
"/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" -MExtUtils::Command::MM -e 'cp_nonempty' -- ImageRGB.bs ../../blib/arch/auto/PDL/ImageRGB/ImageRGB.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/ImageRGB'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Minuit'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Minuit'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Simplex'
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Simplex'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Slatec'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Slatec'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Transform'
make[3]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Transform/Cartography'
Manifying 1 pod document
make[3]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Transform/Cartography'
make[3]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Transform/Proj4'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Transform/Proj4'
"/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" -MExtUtils::Command::MM -e 'cp_nonempty' -- Transform.bs ../../blib/arch/auto/PDL/Transform/Transform.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/Transform'
make[2]: Entering directory '/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp/work/1660507027.1312741/PDL-2.080/Libtmp/CallExt'
"/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" -MExtUtils::Command::MM -e 'cp_nonempty' -- CallExt.bs ../../blib/arch/auto/PDL/CallExt/CallExt.bs 644
PERL_DL_NONLAZY=1 "/home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, '../../blib/lib', '../../blib/arch')" t/*.t
t/callext.t .. ok
All tests successful.
Files=1, Tests=2,  0 wallclock secs ( 0.00 usr  0.01 sys +  0.15 cusr  0.04 csys =  0.20 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

runtime:

    Module                               Need   Have      
    ------------------------------------ ------ ----------
    autodie                              0      2.23      
    Data::Dumper                         0      2.151     
    Data::Table                          0      1.78      
    DBD::SQLite                          0      1.70      
    DBI                                  0      1.643     
    File::Path                           0      2.09      
    File::Spec                           0      3.75      
  ! GenOO                                v1.4.5 n/a       
  ! GenOO::Data::File::FASTQ             0      n/a       
  ! GenOO::Data::File::SAM               0      n/a       
  ! GenOO::GeneCollection::Factory       0      n/a       
  ! GenOO::GenomicRegion                 0      n/a       
  ! GenOO::RegionCollection::Factory     0      n/a       
  ! GenOO::TranscriptCollection::Factory 0      n/a       
  ! GenOOx::Data::File::SAMbwa           0      n/a       
  ! GenOOx::Data::File::SAMstar          0      n/a       
    IO::Interactive                      0      1.023     
    List::Util                           0      1.62      
    Modern::Perl                         0      1.20220515
  ! Moose                                0      n/a       
  ! MooseX::App                          0      n/a       
  ! MooseX::App::Command                 0      n/a       
  ! MooseX::App::Role                    0      n/a       
  ! MooseX::Getopt                       0      n/a       
    namespace::autoclean                 0      0.29      
    PDL                                  2.007  2.080     
  ! Statistics::R                        0      n/a       
    Try::Tiny                            0      0.31      

configure:

    Module                               Need   Have      
    ------------------------------------ ------ ----------
    ExtUtils::MakeMaker                  0      7.64      


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    LANG = C.UTF-8
    PATH = /home/liveapp/.plenv/versions/5.20.0/bin:/home/liveapp/.plenv/libexec:/home/liveapp/.plenv/plugins/perl-build/bin:/home/liveapp/.plenv/shims:/home/liveapp/.plenv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
    PERL_CPANM_HOME = /home/liveapp/cpantesters.new/5.20.0/.cpanm_temp
    SHELL = /bin/bash
    TERM = xterm-256color

Perl special variables (and OS-specific diagnostics, for MSWin32):

    EGID = 1001 27 1001
    EUID = 1001
    EXECUTABLE_NAME = /home/liveapp/.plenv/versions/5.20.0/bin/perl5.20.0
    GID = 1001 27 1001
    UID = 1001

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.05    
    CPAN::Meta          2.150010
    Cwd                 3.75    
    ExtUtils::CBuilder  0.280236
    ExtUtils::Command   7.64    
    ExtUtils::Install   2.06    
    ExtUtils::MakeMaker 7.64    
    ExtUtils::Manifest  1.70    
    ExtUtils::ParseXS   3.44    
    File::Spec          3.75    
    JSON                n/a     
    JSON::PP            4.11    
    Module::Build       0.4231  
    Module::Signature   n/a     
    Parse::CPAN::Meta   2.150010
    Test::Harness       3.44    
    Test::More          1.302191
    YAML                n/a     
    YAML::Syck          n/a     
    version             0.9929  


--

Summary of my perl5 (revision 5 version 20 subversion 0) configuration:
   
  Platform:
    osname=linux, osvers=5.4.0-91-generic, archname=x86_64-linux
    uname='linux supremeadmin 5.4.0-91-generic #102-ubuntu smp fri nov 5 16:31:28 utc 2021 x86_64 x86_64 x86_64 gnulinux '
    config_args='-Dprefix=/home/liveapp/.plenv/versions/5.20.0 -de -Dversiononly -A'eval:scriptdir=/home/liveapp/.plenv/versions/5.20.0/bin''
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O2',
    cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
    ccversion='', gccversion='9.4.0', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
    libpth=/usr/local/lib /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
    libs=-lnsl -ldl -lm -lcrypt -lutil -lc
    perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
    libc=libc-2.31.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.31'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
                        PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
                        USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
                        USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
                        USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
  Locally applied patches:
	Devel::PatchPerl 2.08
  Built under linux
  Compiled at Aug  8 2022 07:29:32
  %ENV:
    PERL_CPANM_HOME="/home/liveapp/cpantesters.new/5.20.0/.cpanm_temp"
  @INC:
    /home/liveapp/.plenv/versions/5.20.0/lib/perl5/site_perl/5.20.0/x86_64-linux
    /home/liveapp/.plenv/versions/5.20.0/lib/perl5/site_perl/5.20.0
    /home/liveapp/.plenv/versions/5.20.0/lib/perl5/5.20.0/x86_64-linux
    /home/liveapp/.plenv/versions/5.20.0/lib/perl5/5.20.0
    .